Variation in human herpesvirus 6B telomeric integration, excision and transmission between tissues and individuals

  1. Michael L Wood
  2. Colin D Veal
  3. Rita Neumann
  4. Nicolás M Suárez
  5. Jenna Nichols
  6. Andrei J Parker
  7. Diana Martin
  8. Simon PR Romaine
  9. Veryan Codd
  10. Nilesh J Samani
  11. Adriaan A Voors
  12. Maciej Tomaszewski
  13. Louis Flamand
  14. Andrew J Davison
  15. Nicola J Royle  Is a corresponding author
  1. University of Leicester, United Kingdom
  2. MRC-University of Glasgow Centre for Virus Research, United Kingdom
  3. University of Groningen, Netherlands
  4. University of Manchester, United Kingdom
  5. Centre hospitalier de l'Université Laval, Canada

Abstract

Human herpesviruses 6A and 6B (HHV-6A/6B) are ubiquitous pathogens that persist lifelong in latent form and can cause severe conditions upon reactivation. They are spread by community-acquired infection of free virus (acqHHV6A/6B) and by germline transmission of inherited chromosomally-integrated HHV-6A/6B (iciHHV-6A/6B) in telomeres. We exploited a hypervariable region of the HHV-6B genome to investigate the relationship between acquired and inherited virus and revealed predominantly maternal transmission of acqHHV-6B in families. Remarkably, we demonstrate that some copies of acqHHV-6B in saliva from healthy adults gained a telomere, indicative of integration and latency, and that the frequency of viral genome excision from telomeres in iciHHV-6B carriers is surprisingly high and varies between tissues. In addition, newly formed short telomeres generated by partial viral genome release are frequently lengthened, particularly in telomerase-expressing pluripotent cells. Consequently, iciHHV-6B carriers are mosaic for different iciHHV-6B structures, including circular extra-chromosomal forms that have the potential to reactivate. Finally, we show transmission of an HHV-6B strain from an iciHHV-6B mother to her non-iciHHV-6B son. Altogether we demonstrate that iciHHV-6B can readily transition between telomere-integrated and free virus forms.

Data availability

Sequencing data have been deposited in GenBank under accession numbers: MW049313-MW049327.The HHV6 explorer is freely available at https://www.hhv6explorer.org/ and so The source code for the HHV6 explorer and HHV6 counter are available at https://github.com/colinveal/HHV6-Explorer.Other data generated or analysed during this study are included in the manuscript and supporting files.

Article and author information

Author details

  1. Michael L Wood

    University of Leicester, Leicester, United Kingdom
    Competing interests
    The authors declare that no competing interests exist.
  2. Colin D Veal

    University of Leicester, Leicester, United Kingdom
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-9840-2512
  3. Rita Neumann

    University of Leicester, Leicester, United Kingdom
    Competing interests
    The authors declare that no competing interests exist.
  4. Nicolás M Suárez

    MRC-University of Glasgow Centre for Virus Research, Glasgow, United Kingdom
    Competing interests
    The authors declare that no competing interests exist.
  5. Jenna Nichols

    MRC-University of Glasgow Centre for Virus Research, Glasgow, United Kingdom
    Competing interests
    The authors declare that no competing interests exist.
  6. Andrei J Parker

    University of Leicester, Leicester, United Kingdom
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-0735-4357
  7. Diana Martin

    University of Leicester, Leicester, United Kingdom
    Competing interests
    The authors declare that no competing interests exist.
  8. Simon PR Romaine

    University of Leicester, Leicester, United Kingdom
    Competing interests
    The authors declare that no competing interests exist.
  9. Veryan Codd

    University of Leicester, Leicester, United Kingdom
    Competing interests
    The authors declare that no competing interests exist.
  10. Nilesh J Samani

    University of Leicester, Leicester, United Kingdom
    Competing interests
    The authors declare that no competing interests exist.
  11. Adriaan A Voors

    University of Groningen, Groningen, Netherlands
    Competing interests
    The authors declare that no competing interests exist.
  12. Maciej Tomaszewski

    University of Manchester, Manchester, United Kingdom
    Competing interests
    The authors declare that no competing interests exist.
  13. Louis Flamand

    Department of Microbiology, Infectious Diseases and Immunology, Centre hospitalier de l'Université Laval, Québec, Canada
    Competing interests
    The authors declare that no competing interests exist.
  14. Andrew J Davison

    MRC-University of Glasgow Centre for Virus Research, Glasgow, United Kingdom
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-4991-9128
  15. Nicola J Royle

    University of Leicester, Leicester, United Kingdom
    For correspondence
    njr@le.ac.uk
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-1174-6329

Funding

Biotechnology and Biological Sciences Research Council (MIBTP 1645656)

  • Michael L Wood

Medical Research Council (G0901657)

  • Nicola J Royle

HHV-6 Foundation (Pilot grant)

  • Nicola J Royle

Canadian Institutes of Health Research (MOP 123214)

  • Louis Flamand

European Commission (FP7-242209- BIOSTAT-CHF)

  • Adriaan A Voors

Medical Research Council (MC_UU_12014/3)

  • Andrew J Davison

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Ethics

Human subjects: The study was conducted in accordance with the Declaration of Helsinki and with approval by the relevant ethics committees as follows:The University of Leicester's Research Ethics Committee (refs: 10553-njr-genetics; njr-61d3).The BIOSTAT-CHF study was approved by the relevant ethics committee in each centre, all participants gave their written, informed consent to participate (Voors et al, 2016).

Copyright

© 2021, Wood et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 1,238
    views
  • 112
    downloads
  • 8
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Michael L Wood
  2. Colin D Veal
  3. Rita Neumann
  4. Nicolás M Suárez
  5. Jenna Nichols
  6. Andrei J Parker
  7. Diana Martin
  8. Simon PR Romaine
  9. Veryan Codd
  10. Nilesh J Samani
  11. Adriaan A Voors
  12. Maciej Tomaszewski
  13. Louis Flamand
  14. Andrew J Davison
  15. Nicola J Royle
(2021)
Variation in human herpesvirus 6B telomeric integration, excision and transmission between tissues and individuals
eLife 10:e70452.
https://doi.org/10.7554/eLife.70452

Share this article

https://doi.org/10.7554/eLife.70452

Further reading

    1. Genetics and Genomics
    Wenjing Liu, Shujin Li ... Xianjun Zhu
    Research Article

    Familial exudative vitreoretinopathy (FEVR) is a severe genetic disorder characterized by incomplete vascularization of the peripheral retina and associated symptoms that can lead to vision loss. However, the underlying genetic causes of approximately 50% of FEVR cases remain unknown. Here, we report two heterozygous variants in calcyphosine-like gene (CAPSL) that is associated with FEVR. Both variants exhibited compromised CAPSL protein expression. Vascular endothelial cell (EC)-specific inactivation of Capsl resulted in delayed radial/vertical vascular progression, compromised endothelial proliferation/migration, recapitulating the human FEVR phenotypes. CAPSL-depleted human retinal microvascular endothelial cells (HRECs) exhibited impaired tube formation, decreased cell proliferation, disrupted cell polarity establishment, and filopodia/lamellipodia formation, as well as disrupted collective cell migration. Transcriptomic and proteomic profiling revealed that CAPSL abolition inhibited the MYC signaling axis, in which the expression of core MYC targeted genes were profoundly decreased. Furthermore, a combined analysis of CAPSL-depleted HRECs and c-MYC-depleted human umbilical vein endothelial cells uncovered similar transcription patterns. Collectively, this study reports a novel FEVR-associated candidate gene, CAPSL, which provides valuable information for genetic counseling of FEVR. This study also reveals that compromised CAPSL function may cause FEVR through MYC axis, shedding light on the potential involvement of MYC signaling in the pathogenesis of FEVR.

    1. Developmental Biology
    2. Genetics and Genomics
    Mitchell Bestry, Alexander N Larcombe ... David Martino
    Research Article

    Alcohol consumption in pregnancy can affect genome regulation in the developing offspring but results have been contradictory. We employed a physiologically relevant murine model of short-term moderate prenatal alcohol exposure (PAE) resembling common patterns of alcohol consumption in pregnancy in humans. Early moderate PAE was sufficient to affect site-specific DNA methylation in newborn pups without altering behavioural outcomes in adult littermates. Whole-genome bisulfite sequencing of neonatal brain and liver revealed stochastic influence on DNA methylation that was mostly tissue-specific, with some perturbations likely originating as early as gastrulation. DNA methylation differences were enriched in non-coding genomic regions with regulatory potential indicative of broad effects of alcohol on genome regulation. Replication studies in human cohorts with fetal alcohol spectrum disorder suggested some effects were metastable at genes linked to disease-relevant traits including facial morphology, intelligence, educational attainment, autism, and schizophrenia. In our murine model, a maternal diet high in folate and choline protected against some of the damaging effects of early moderate PAE on DNA methylation. Our studies demonstrate that early moderate exposure is sufficient to affect fetal genome regulation even in the absence of overt phenotypic changes and highlight a role for preventative maternal dietary interventions.