Reserpine maintains photoreceptor survival in retinal ciliopathy by resolving proteostasis imbalance and ciliogenesis defects

  1. Holly Y Chen
  2. Manju Swaroop
  3. Samantha Papal
  4. Anupam Mondal
  5. Hyun Beom Song
  6. Laura Campello
  7. Gregory Tawa
  8. Florian Regent
  9. Hiroko Shimada
  10. Kunio Nagashima
  11. Natalia de Val
  12. Samuel G Jacobson
  13. Wei Zheng
  14. Anand Swaroop  Is a corresponding author
  1. National Eye Institute, United States
  2. National Center for Advancing Translational Sciences, United States
  3. Frederick National Laboratory for Cancer Research, United States
  4. University of Pennsylvania, United States

Abstract

Ciliopathies manifest from sensory abnormalities to syndromic disorders with multi-organ pathologies, with retinal degeneration a highly penetrant phenotype. Photoreceptor cell death is a major cause of incurable blindness in retinal ciliopathies. To identify drug candidates to maintain photoreceptor survival, we performed an unbiased, high-throughput screening of over 6,000 bioactive small molecules using retinal organoids differentiated from induced pluripotent stem cells (iPSC) of rd16 mouse, which is a model of Leber congenital amaurosis (LCA) type 10 caused by mutations in the cilia-centrosomal gene CEP290. We identified five non-toxic positive hits, including the lead molecule reserpine, which maintained photoreceptor development and survival in rd16 organoids. Reserpine also improved photoreceptors in retinal organoids derived from induced pluripotent stem cells of LCA10 patients and in rd16 mouse retina in vivo. Reserpine-treated patient organoids revealed modulation of signaling pathways related to cell survival/death, metabolism, and proteostasis. Further investigation uncovered dysregulation of autophagy associated with compromised primary cilium biogenesis in patient organoids and rd16 mouse retina. Reserpine partially restored the balance between autophagy and the ubiquitin-proteasome system at least in part by increasing the cargo adaptor p62, resulting in improved primary cilium assembly. Our study identifies effective drug candidates in preclinical studies of CEP290 retinal ciliopathies through cross-species drug discovery using iPSC-derived organoids, highlights the impact of proteostasis in the pathogenesis of ciliopathies, and provides new insights for treatments of retinal neurodegeneration.

Data availability

All data needed to evaluate the conclusions in the paper are present in the paper and/or the Supplementary Materials. RNA-seq data are available through GEO accession #206959.

The following data sets were generated

Article and author information

Author details

  1. Holly Y Chen

    Neurobiology, Neurodegeneration and Repair Laboratory, National Eye Institute, Bethesda, United States
    Competing interests
    Holly Y Chen, Listed as inventor on a patent application related to the small molecules in this study by National Institutes of Health (PCT/US2021/040157).
  2. Manju Swaroop

    National Therapeutics for Rare and Neglected Diseases, National Center for Advancing Translational Sciences, Rockville, United States
    Competing interests
    Manju Swaroop, Listed as inventor on a patent application related to the small molecules in this study by National Institutes of Health (PCT/US2021/040157).
  3. Samantha Papal

    Neurobiology, Neurodegeneration and Repair Laboratory, National Eye Institute, Bethesda, United States
    Competing interests
    Samantha Papal, Listed as inventor on a patent application related to the small molecules in this study by National Institutes of Health (PCT/US2021/040157).
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-9417-6215
  4. Anupam Mondal

    Neurobiology, Neurodegeneration and Repair Laboratory, National Eye Institute, Bethesda, United States
    Competing interests
    Anupam Mondal, Listed as inventor on a patent application related to the small molecules in this study by National Institutes of Health (PCT/US2021/040157).
  5. Hyun Beom Song

    Neurobiology, Neurodegeneration and Repair Laboratory, National Eye Institute, Bethesda, United States
    Competing interests
    No competing interests declared.
  6. Laura Campello

    Neurobiology, Neurodegeneration and Repair Laboratory, National Eye Institute, Bethesda, United States
    Competing interests
    No competing interests declared.
  7. Gregory Tawa

    National Therapeutics for Rare and Neglected Diseases, National Center for Advancing Translational Sciences, Rockville, United States
    Competing interests
    Gregory Tawa, Listed as inventor on a patent application related to the small molecules in this study by National Institutes of Health (PCT/US2021/040157).
  8. Florian Regent

    Neurobiology, Neurodegeneration and Repair Laboratory, National Eye Institute, Bethesda, United States
    Competing interests
    No competing interests declared.
  9. Hiroko Shimada

    Neurobiology, Neurodegeneration and Repair Laboratory, National Eye Institute, Bethesda, United States
    Competing interests
    No competing interests declared.
  10. Kunio Nagashima

    Electron Microscopy Laboratory, Frederick National Laboratory for Cancer Research, Frederick, United States
    Competing interests
    No competing interests declared.
  11. Natalia de Val

    Electron Microscopy Laboratory, Frederick National Laboratory for Cancer Research, Frederick, United States
    Competing interests
    No competing interests declared.
  12. Samuel G Jacobson

    Department of Ophthalmology, University of Pennsylvania, Philadelphia, United States
    Competing interests
    No competing interests declared.
  13. Wei Zheng

    National Therapeutics for Rare and Neglected Diseases, National Center for Advancing Translational Sciences, Rockville, United States
    Competing interests
    Wei Zheng, Listed as inventor on a patent application related to the small molecules in this study by National Institutes of Health (PCT/US2021/040157).
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-1034-0757
  14. Anand Swaroop

    Neurobiology, Neurodegeneration and Repair Laboratory, National Eye Institute, Bethesda, United States
    For correspondence
    swaroopa@nei.nih.gov
    Competing interests
    Anand Swaroop, Listed as inventor on a patent application related to the small molecules in this study by National Institutes of Health (PCT/US2021/040157).
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-1975-1141

Funding

National Eye Institute (Z01EY000546)

  • Anand Swaroop

National Eye Institute (Z01EY000450)

  • Anand Swaroop

National Center for Advancing Translational Sciences (ZIATR000018-06)

  • Wei Zheng

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Ethics

Animal experimentation: All animal procedures were approved by the Animal Care and Use committee of the National Eye Institutes (Animal study protocol NEI-650) and adhered to ARVO Statement for the Use of Animals in Ophthalmic and Vision Research.

Copyright

This is an open-access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication.

Metrics

  • 1,946
    views
  • 415
    downloads
  • 16
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Holly Y Chen
  2. Manju Swaroop
  3. Samantha Papal
  4. Anupam Mondal
  5. Hyun Beom Song
  6. Laura Campello
  7. Gregory Tawa
  8. Florian Regent
  9. Hiroko Shimada
  10. Kunio Nagashima
  11. Natalia de Val
  12. Samuel G Jacobson
  13. Wei Zheng
  14. Anand Swaroop
(2023)
Reserpine maintains photoreceptor survival in retinal ciliopathy by resolving proteostasis imbalance and ciliogenesis defects
eLife 12:e83205.
https://doi.org/10.7554/eLife.83205

Share this article

https://doi.org/10.7554/eLife.83205

Further reading

    1. Biochemistry and Chemical Biology
    Jaskamaljot Kaur Banwait, Liana Islam, Aaron L Lucius
    Research Article

    Escherichia coli ClpB and Saccharomyces cerevisiae Hsp104 are AAA+ motor proteins essential for proteome maintenance and thermal tolerance. ClpB and Hsp104 have been proposed to extract a polypeptide from an aggregate and processively translocate the chain through the axial channel of its hexameric ring structure. However, the mechanism of translocation and if this reaction is processive remains disputed. We reported that Hsp104 and ClpB are non-processive on unfolded model substrates. Others have reported that ClpB is able to processively translocate a mechanically unfolded polypeptide chain at rates over 240 amino acids (aa) per second. Here, we report the development of a single turnover stopped-flow fluorescence strategy that reports on processive protein unfolding catalyzed by ClpB. We show that when translocation catalyzed by ClpB is challenged by stably folded protein structure, the motor enzymatically unfolds the substrate at a rate of ~0.9 aa s−1 with a kinetic step-size of ~60 amino acids at sub-saturating [ATP]. We reconcile the apparent controversy by defining enzyme catalyzed protein unfolding and translocation as two distinct reactions with different mechanisms of action. We propose a model where slow unfolding followed by fast translocation represents an important mechanistic feature that allows the motor to rapidly translocate up to the next folded region or rapidly dissociate if no additional fold is encountered.

    1. Biochemistry and Chemical Biology
    2. Structural Biology and Molecular Biophysics
    Marina Dajka, Tobias Rath ... Benesh Joseph
    Research Article

    Lipopolysaccharides (LPS) confer resistance against harsh conditions, including antibiotics, in Gram-negative bacteria. The lipopolysaccharide transport (Lpt) complex, consisting of seven proteins (A-G), exports LPS across the cellular envelope. LptB2FG forms an ATP-binding cassette transporter that transfers LPS to LptC. How LptB2FG couples ATP binding and hydrolysis with LPS transport to LptC remains unclear. We observed the conformational heterogeneity of LptB2FG and LptB2FGC in micelles and/or proteoliposomes using pulsed dipolar electron spin resonance spectroscopy. Additionally, we monitored LPS binding and release using laser-induced liquid bead ion desorption mass spectrometry. The β-jellyroll domain of LptF stably interacts with the LptG and LptC β-jellyrolls in both the apo and vanadate-trapped states. ATP binding at the cytoplasmic side is allosterically coupled to the selective opening of the periplasmic LptF β-jellyroll domain. In LptB2FG, ATP binding closes the nucleotide binding domains, causing a collapse of the first lateral gate as observed in structures. However, the second lateral gate, which forms the putative entry site for LPS, exhibits a heterogeneous conformation. LptC binding limits the flexibility of this gate to two conformations, likely representing the helix of LptC as either released from or inserted into the transmembrane domains. Our results reveal the regulation of the LPS entry gate through the dynamic behavior of the LptC transmembrane helix, while its β-jellyroll domain is anchored in the periplasm. This, combined with long-range ATP-dependent allosteric gating of the LptF β-jellyroll domain, may ensure efficient and unidirectional transport of LPS across the periplasm.