Figure 1—figure supplement 3. | Admixture into and within sub-Saharan Africa

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Admixture into and within sub-Saharan Africa

Figure 1—figure supplement 3.

Affiliation details

Wellcome Trust Centre for Human Genetics, United Kingdom; Wellcome Trust Sanger Institute, United Kingdom; Medical Research Council Unit, The Gambia; Royal Victoria Teaching Hospital, The Gambia; Centre National de Recherche et de Formation sur le Paludisme, Burkina Faso; University of Rome La Sapienza, Italy; Navrongo Health Research Centre, Ghana; Komfo Anokye Teaching Hospital, Ghana; University of Buea, Cameroon; KEMRI-Wellcome Trust Research Programme, Kenya; Kilimanjaro Christian Medical College, Tanzania; London School of Hygiene and Tropical Medicine, United Kingdom; College of Medicine, University of Malawi, Malawi; University of Bamako, Mali
Figure 1—figure supplement 3.
Download figureOpen in new tabFigure 1—figure supplement 3. fineSTRUCTURE analysis of the full dataset.

We show the tree output from a single run of the fineSTRUCTURE algorithm. To aid reading, the tree has been split in two, East and Southern African groups are on the left, West and Central West African groups are on the right. Leaves are labelled by the identity of the individuals within them, with the total number of individuals in the clusters shown in parentheses. Leaves are coloured by the country of origin (as in Figure 1—figure supplement 1) and branches are coloured by the final ancestry region that the clusters were assigned to. Note that although Malawi and Cameroon individuals were located in a clade with mostly East African individuals, they were assigned to Southern and Central West African ancestry regions, respectively. Clades containing outlying individuals from the Fula and Mandinka are also shown.

DOI: http://dx.doi.org/10.7554/eLife.15266.007