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    1. Microbiology and Infectious Disease

    Single-cell transcriptional dynamics of flavivirus infection

    Fabio Zanini et al.
    A novel virus-inclusive single cell RNA-Seq approach enables identification of novel pro- and antiviral host factors in human cells in response to dengue and Zika virus infection.
    1. Computational and Systems Biology
    2. Neuroscience

    Mapping the function of neuronal ion channels in model and experiment

    William F Podlaski et al.
    The ion channel genealogy resource is a comprehensive and intuitive comparison tool for ion channel models and experimental data, helping to visualize their similarity and function to facilitate better experimentally-constrained modeling.
    1. Neuroscience

    Quantitative neuroanatomy for connectomics in Drosophila

    Casey M Schneider-Mizell et al.
    A new method that uses the cellular neuroanatomy of neuronal connectivity to quickly and robustly reconstruct neuronal circuits in Drosophila from large electron microscopy volumes.
    1. Computational and Systems Biology
    2. Neuroscience

    NetPyNE, a tool for data-driven multiscale modeling of brain circuits

    Salvador Dura-Bernal et al.
    The NetPyNE software tool provides a framework to efficiently develop, simulate, optimize and analyze experimentally grounded neural models spanning the molecular, cellular and circuit scales.
  1. blue text saying annotations with six in speech bubble

    Enabling scientific discussion on eLife with Hypothesis

    We collaborated with Hypothesis to integrate the open annotation tool on eLife.
  2. Reproducible Document Stack: Towards a scalable solution for reproducible articles

    We announce our roadmap towards an open, scalable infrastructure for the publication of computationally reproducible articles.
  3. Open-Source Community Call: Exploring tools for reproducible research

    Community members share the latest efforts and opportunities in developing tools for conducting and communicating research.
  4. Launch Binder

    Integrating Binder and Stencila – the building blocks to increased open communication and transparency

    Find out how this new project can help researchers communicate their work openly, collaborate with other scientists and ensure the high quality and transparency of their workflow and findings.
  5. Innovation Sprint 2019

    Innovation Sprint 2019: Project roundup

    From web tools to drive forward research discovery, citation and evaluation, to literature curation and knowledge extraction, we showcase the projects developed at this year’s Innovation Sprint.
  6. FAIR_biomed_database_examples

    FAIR-biomed: On-demand research information

    An open-source browser extension that delivers information from specialised databases directly to readers