1,663 results found
    1. Evolutionary Biology

    An armoured marine reptile from the Early Triassic of South China and its phylogenetic and evolutionary implications

    Andrzej S Wolniewicz, Yuefeng Shen ... Jun Liu
    A new fossil sheds light on the evolution of an aquatic lifestyle in extinct reptiles and supports a close phylogenetic relationship between archosaurs (crocodiles, dinosaurs, birds, and kin) and turtles.
    1. Epidemiology and Global Health
    2. Genetics and Genomics

    Within-host diversity improves phylogenetic and transmission reconstruction of SARS-CoV-2 outbreaks

    Arturo Torres Ortiz, Michelle Kendall ... Louis Grandjean
    The use of within-host pathogen genomic sequence data can be used to improve phylogenetic and transmission estimates.
    1. Genetics and Genomics
    2. Microbiology and Infectious Disease

    Deep-sequence phylogenetics to quantify patterns of HIV transmission in the context of a universal testing and treatment trial – BCPP/Ya Tsie trial

    Lerato E Magosi, Yinfeng Zhang ... Marc Lipsitch
    HIV transmissions into intervention communities from control communities in the Botswana/Ya Tsie trial were similar to the reverse at baseline, and 10 times more common post-baseline, concordant with a predicted benefit of a universal test-and-treat HIV prevention intervention.
    1. Epidemiology and Global Health
    2. Evolutionary Biology

    Estimating the potential to prevent locally acquired HIV infections in a UNAIDS Fast-Track City, Amsterdam

    Alexandra Blenkinsop, Mélodie Monod ... Oliver Ratmann
    Phylogenetic evidence suggests that the majority of HIV infections occurring in the UNAIDS Fast-track city Amsterdam continue to have an Amsterdam resident as source, indicating that the majority of HIV infections in Amsterdam could be prevented through city-level interventions.
    1. Epidemiology and Global Health
    2. Evolutionary Biology

    Taxonium, a web-based tool for exploring large phylogenetic trees

    Theo Sanderson
    A new tool allows researchers to dive into phylogenetic trees containing millions of nodes using just their web browser.
    1. Evolutionary Biology
    2. Neuroscience

    Quantitative uniqueness of human brain evolution revealed through phylogenetic comparative analysis

    Ian F Miller, Robert A Barton, Charles L Nunn
    The exceptionally large size of the human brain is the result of accelerating evolution towards larger brains in hominins, but is not the product of neocortical expansion.
    1. Evolutionary Biology

    Phylogenomics of white-eyes, a ‘great speciator’, reveals Indonesian archipelago as the center of lineage diversity

    Chyi Yin Gwee, Kritika M Garg ... Frank E Rheindt
    Contrary to the high absolute number of white-eyes in other parts of the world, the Indonesian archipelago is the center of phylogenetic diversity of this great speciator.
    1. Evolutionary Biology

    Support for a clade of Placozoa and Cnidaria in genes with minimal compositional bias

    Christopher E Laumer, Harald Gruber-Vodicka ... Gonzalo Giribet
    Protein coding genes strongly support a sister group relationship between Placozoa and Cnidaria to the exclusion of Bilateria, contradicting previous phylogenies, which have likely been misled by pervasive compositional heterogeneity.
    1. Genetics and Genomics
    2. Microbiology and Infectious Disease

    A phylogenetic transform enhances analysis of compositional microbiota data

    Justin D Silverman, Alex D Washburne ... Lawrence A David
    The PhILR transform uses an evolutionary model to overcome statistical challenges associated with microbiota surveys.
    1. Biochemistry and Chemical Biology
    2. Evolutionary Biology

    Comprehensive phylogenetic analysis of the ribonucleotide reductase family reveals an ancestral clade

    Audrey A Burnim, Matthew A Spence ... Nozomi Ando
    A large-scale phylogenetic inference of the ribonucleotide reductase family reveals a new distinct clade with implications on how nature adapted to environmental changes.

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