241 results found
    1. Cancer Biology
    2. Genetics and Genomics

    High-resolution mapping demonstrates inhibition of DNA excision repair by transcription factors

    Mingrui Duan, Smitha Sivapragasam ... Peng Mao
    Transcription factor proteins play an important role in modulating base damage formation and excision repair at the binding sites in the genome.
    1. Biochemistry and Chemical Biology
    2. Chromosomes and Gene Expression

    Perturbation of base excision repair sensitizes breast cancer cells to APOBEC3 deaminase-mediated mutations

    Birong Shen, Joseph H Chapman ... Anthony V Furano
    Accumulation of mutations in some cancers is correlated with an aberration of DNA repair and access of a DNA deaminase to normal genomic DNA.
    1. Biochemistry and Chemical Biology
    2. Chromosomes and Gene Expression

    Repair of naturally occurring mismatches can induce mutations in flanking DNA

    Jia Chen, Brendan F Miller, Anthony V Furano
    The repair of spontaneous DNA damage can introduce mutators that lead to further genetic changes, which could underlie evolutionary change, disease and aging.
    1. Immunology and Inflammation
    2. Microbiology and Infectious Disease

    Diverse fates of uracilated HIV-1 DNA during infection of myeloid lineage cells

    Erik C Hansen, Monica Ransom ... James T Stivers
    Uracil/adenine base pairs in HIV-1 DNA are attacked by the uracil base excision repair machinery in macrophages, which leads to HIV restriction and viral genome diversification by transcription-associated mutagenesis.
    1. Developmental Biology

    NEIL1 and NEIL2 DNA glycosylases protect neural crest development against mitochondrial oxidative stress

    Dandan Han, Lars Schomacher ... Christof Niehrs
    NEIL DNA glycosylases are required to counteract oxidative base damages within the mitochondrial genome to safeguard neural crest cell differentiation.
    1. Structural Biology and Molecular Biophysics

    A second DNA binding site on RFC facilitates clamp loading at gapped or nicked DNA

    Xingchen Liu, Christl Gaubitz ... Brian A Kelch
    Structural, biochemical, and cellular data reveal the mechanism by which the clamp loader attaches sliding clamps at gapped and nicked DNA to support DNA damage repair.
    1. Biochemistry and Chemical Biology
    2. Chromosomes and Gene Expression

    Crosstalk between repair pathways elicits double-strand breaks in alkylated DNA and implications for the action of temozolomide

    Robert P Fuchs, Asako Isogawa ... Shingo Fujii
    DNA lesions formed by alkylating agents trigger double-strand breaks, in the absence of replication, by the action of MMR and BER at nearby O-alkyl and N-alkyl adducts, respectively.
    1. Structural Biology and Molecular Biophysics

    Structural basis for DNA 5´-end resection by RecJ

    Kaiying Cheng, Hong Xu ... Yuejin Hua
    A structural investigation reveals details of the mechanism by which the nuclease RecJ processes DNA ends to repair double strand breaks.
    1. Biochemistry and Chemical Biology
    2. Chromosomes and Gene Expression

    MutSα maintains the mismatch repair capability by inhibiting PCNA unloading

    Yoshitaka Kawasoe, Toshiki Tsurimoto ... Tatsuro S Takahashi
    Biochemical analysis in Xenopus egg extracts reveals that the MutSα mismatch sensor retains the DNA-bound replication clamp to maintain a post-replicative temporal window permissive to strand-specific repair of mismatches.
    1. Biochemistry and Chemical Biology

    Cryo-EM structures reveal that RFC recognizes both the 3′- and 5′-DNA ends to load PCNA onto gaps for DNA repair

    Fengwei Zheng, Roxana Georgescu ... Michael E O'Donnell
    Cryo-EM shows a 5’ DNA site on the RFC clamp loader, in addition to the 3’ site, and biochemical study shows the 5’ site facilitates PCNA loading onto gaps, consistent with genetics indicating the 5’ DNA site facilitates gap repair.

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