9 results found
    1. Developmental Biology
    2. Chromosomes and Gene Expression

    H3K27 modifications define segmental regulatory domains in the Drosophila bithorax complex

    Sarah K Bowman, Aimee M Deaton ... Welcome Bender
    Segment-specific boundaries of histone modifications reveal the regulatory logic of a classic developmental control region.
    1. Chromosomes and Gene Expression

    Stem-loop and circle-loop TADs generated by directional pairing of boundary elements have distinct physical and regulatory properties

    Wenfan Ke, Miki Fujioka ... James B Jaynes
    Boundary:boundary pairing generates either stem-loop or circle-loop TADs, and these loop topologies differ in how they impact chromosome structure and genetic activities.
    1. Chromosomes and Gene Expression
    2. Developmental Biology

    lncRNA read-through regulates the BX-C insulator Fub-1

    Airat Ibragimov, Xin Yang Bing ... Paul Schedl
    A novel mechanism of gene regulation is discovered wherein a specific long non-coding RNA abolishes the blocking activity of chromatin insulator in the Drosophila HOX gene cluster.
    1. Chromosomes and Gene Expression

    Chromosome structure in Drosophila is determined by boundary pairing not loop extrusion

    Xinyang Bing, Wenfan Ke ... James B Jaynes
    Boundary:boundary pairing interactions drive TAD formation in Drosophila.
    1. Biochemistry and Chemical Biology
    2. Chromosomes and Gene Expression

    Elba, a novel developmentally regulated chromatin boundary factor is a hetero-tripartite DNA binding complex

    Tsutomu Aoki, Ali Sarkeshik ... Paul Schedl
    A chromatin boundary factor that is only active during early embryo development has been discovered in Drosophila.
    1. Evolutionary Biology
    2. Genetics and Genomics

    Cis-regulatory modes of Ultrabithorax inactivation in butterfly forewings

    Amruta Tendolkar, Anyi Mazo-Vargas ... Arnaud Martin
    CRISPR knock-outs and functional genomic approaches probe the regulatory mechanism restricting the Hox gene Ubx to butterfly hindwings, explaining color pattern differentiation from forewings.
    1. Developmental Biology
    2. Genetics and Genomics

    Disparate expression specificities coded by a shared Hox-C enhancer

    Steve W Miller, James W Posakony
    Tucked within a well-known story of diverging gene function is a single enhancer encoding two inseparable specificities that regulates two adjacent genes, each with different spatiotemporal expression patterns.
    1. Developmental Biology
    2. Neuroscience

    Anterior CNS expansion driven by brain transcription factors

    Jesús Rodriguez Curt, Behzad Yaghmaeian Salmani, Stefan Thor
    The expansion of the anterior Drosophila CNS is driven by increased progenitor generation and prolonged proliferation, mediated by brain-restricted genes and the PRC2.
    1. Chromosomes and Gene Expression
    2. Computational and Systems Biology

    How subtle changes in 3D structure can create large changes in transcription

    Jordan Yupeng Xiao, Antonina Hafner, Alistair N Boettiger
    Promoter futile cycles can explain how subtle differences in genome folding sometimes generate large difference in gene expression.

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