247 results found
    1. Cell Biology
    2. Chromosomes and Gene Expression

    Coordination between nucleotide excision repair and specialized polymerase DnaE2 action enables DNA damage survival in non-replicating bacteria

    Asha Mary Joseph, Saheli Daw ... Anjana Badrinarayanan
    Live-cell imaging shows that replication-independent specialized polymerase action is a consequence of lesion processing via NER and impacts cellular survival under stress outside replicative phases of the cell cycle.
    1. Cancer Biology
    2. Genetics and Genomics

    High-resolution mapping demonstrates inhibition of DNA excision repair by transcription factors

    Mingrui Duan, Smitha Sivapragasam ... Peng Mao
    Transcription factor proteins play an important role in modulating base damage formation and excision repair at the binding sites in the genome.
    1. Structural Biology and Molecular Biophysics

    A second DNA binding site on RFC facilitates clamp loading at gapped or nicked DNA

    Xingchen Liu, Christl Gaubitz ... Brian A Kelch
    Structural, biochemical, and cellular data reveal the mechanism by which the clamp loader attaches sliding clamps at gapped and nicked DNA to support DNA damage repair.
    1. Structural Biology and Molecular Biophysics

    Structural basis for transcription complex disruption by the Mfd translocase

    Jin Young Kang, Eliza Llewellyn ... Seth A Darst
    Seven distinct cryo-electron microscopy structures delineate the elaborate mechanism for how E. coli Mfd, a transcription repair coupling factor, disassembles the RNA polymerase transcription elongation complex to initiate transcription-coupled repair.
    1. Structural Biology and Molecular Biophysics

    Structural basis for DNA 5´-end resection by RecJ

    Kaiying Cheng, Hong Xu ... Yuejin Hua
    A structural investigation reveals details of the mechanism by which the nuclease RecJ processes DNA ends to repair double strand breaks.
    1. Structural Biology and Molecular Biophysics

    The complete structure of the human TFIIH core complex

    Basil J Greber, Daniel B Toso ... Eva Nogales
    The structure of human transcription factor IIH, a critical DNA repair and transcription initiation factor, has been determined by cryo-electron microscopy.
    1. Physics of Living Systems

    Sequence-dependent base pair stepping dynamics in XPD helicase unwinding

    Zhi Qi, Robert A Pugh ... Yann R Chemla
    The ability of an enzyme called XPD helicase to unwind the double helix is influenced by the DNA sequence and the availability of energy.
    1. Structural Biology and Molecular Biophysics
    2. Chromosomes and Gene Expression

    MutS/MutL crystal structure reveals that the MutS sliding clamp loads MutL onto DNA

    Flora S Groothuizen, Ines Winkler ... Titia K Sixma
    Visualization of the sliding clamp in DNA mismatch repair shows how a transient complex is activated.
    1. Chromosomes and Gene Expression

    High-resolution mapping of heteroduplex DNA formed during UV-induced and spontaneous mitotic recombination events in yeast

    Yi Yin, Margaret Dominska ... Thomas D Petes
    Genome-wide mapping of heteroduplex DNA (a recombination intermediate) formed during mitotic recombination in yeast demonstrates that the "classical" model of double-strand DNA break repair is inadequate to explain several aspects of mitotic recombination.
    1. Biochemistry and Chemical Biology

    Bacterial exonuclease III expands its enzymatic activities on single-stranded DNA

    Hao Wang, Chen Ye ... Yan Li
    Bacterial exonuclease III exhibits underestimated enzymatic activities on single-stranded DNA, which may redefine its roles in relevant biological processes and biosensor development.

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