1. Computational and Systems Biology

Cutting Edge: Anatomy of BioJS, an open source community for the life sciences

  1. Guy Yachdav  Is a corresponding author
  2. Tatyana Goldberg
  3. Sebastian Wilzbach
  4. David Dao
  5. Iris Shih
  6. Saket Choudhary
  7. Steve Crouch
  8. Max Franz
  9. Alexander García
  10. Leyla J García
  11. Björn A Grüning
  12. Devasena Inupakutika
  13. Ian Sillitoe
  14. Anil S Thanki
  15. Bruno Vieira
  16. José M Villaveces
  17. Maria V Schneider
  18. Suzanna Lewis
  19. Steve Pettifer
  20. Burkhard Rost
  21. Manuel Corpas  Is a corresponding author
  1. Technische Universität München, Germany
  2. University of Southern California, United States
  3. University of Southampton, United Kingdom
  4. University of Toronto, Canada
  5. Linkingdata I/O LLC, United States
  6. European Molecular Biology Laboratory-European Bioinformatics Institute, United Kingdom
  7. University of Freiburg, Germany
  8. University College London, United Kingdom
  9. The Genome Analysis Centre, United Kingdom
  10. Queen Mary University of London, United Kingdom
  11. Max Planck Institute of Biochemistry, Germany
  12. Lawrence Berkeley National Laboratory, United States
  13. The University of Manchester, United Kingdom
https://doi.org/10.7554/eLife.07009
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Cite this article
  1. Guy Yachdav
  2. Tatyana Goldberg
  3. Sebastian Wilzbach
  4. David Dao
  5. Iris Shih
  6. Saket Choudhary
  7. Steve Crouch
  8. Max Franz
  9. Alexander García
  10. Leyla J García
  11. Björn A Grüning
  12. Devasena Inupakutika
  13. Ian Sillitoe
  14. Anil S Thanki
  15. Bruno Vieira
  16. José M Villaveces
  17. Maria V Schneider
  18. Suzanna Lewis
  19. Steve Pettifer
  20. Burkhard Rost
  21. Manuel Corpas
(2015)
Cutting Edge: Anatomy of BioJS, an open source community for the life sciences
eLife 4:e07009.
https://doi.org/10.7554/eLife.07009
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Examples of BioJS tools.

Tree Viewer (visualization of phylogeny data in a tree-like graph); MSA Viewer (visualization and analysis of multiple sequence alignments); Proteome (multilevel visualization of proteomes in UniProt; The UniProt Consortium, 2015); 3D structures (visualization of protein structures); Dot-bracket (visualization of RNA secondary structures); Muts-needle plot (presentation of mutation distribution across protein sequences). Protein Feature Viewer (visualization of position-based annotations in protein sequences); Plasmids (visualization of DNA plasmids); Pathway visualization (visualization of data from Pathway Commons; Cerami et al., 2011). Note that all visualization tools are native to the browser and do not require any specialized software (such as Adobe flash, Java Virtual Machine or Microsoft Silverlight) to be installed or loaded.

https://doi.org/10.7554/eLife.07009.002

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  1. Guy Yachdav
  2. Tatyana Goldberg
  3. Sebastian Wilzbach
  4. David Dao
  5. Iris Shih
  6. Saket Choudhary
  7. Steve Crouch
  8. Max Franz
  9. Alexander García
  10. Leyla J García
  11. Björn A Grüning
  12. Devasena Inupakutika
  13. Ian Sillitoe
  14. Anil S Thanki
  15. Bruno Vieira
  16. José M Villaveces
  17. Maria V Schneider
  18. Suzanna Lewis
  19. Steve Pettifer
  20. Burkhard Rost
  21. Manuel Corpas
(2015)
Cutting Edge: Anatomy of BioJS, an open source community for the life sciences
eLife 4:e07009.
https://doi.org/10.7554/eLife.07009