Determination of ubiquitin fitness landscapes under different chemical stresses in a classroom setting
- University of California, San Francisco, United States
- Howard Hughes Medical Institute, University of California, San Francisco, United States
- University of California, San Francisco, San Francisco, United States
- University of Massachusetts Medical School, United States
Abstract
Ubiquitin is essential for eukaryotic life and varies in only 3 amino acid positions between yeast and humans. However, recent deep sequencing studies indicate that ubiquitin is highly tolerant to single mutations. We hypothesized that this tolerance would be reduced by chemically induced physiologic perturbations. To test this hypothesis, a class of first year UCSF graduate students employed deep mutational scanning to determine the fitness landscape of all possible single residue mutations in the presence of five different small molecule perturbations. These perturbations uncover 'shared sensitized positions' localized to areas around the hydrophobic patch and the C-terminus. In addition, we identified perturbation specific effects such as a sensitization of His68 in HU and a tolerance to mutation at Lys63 in DTT. Our data show how chemical stresses can reduce buffering effects in the ubiquitin proteasome system. Finally, this study demonstrates the potential of lab-based interdisciplinary graduate curriculum.
Article and author information
Author details
Reviewing Editor
- Jeffery W Kelly, Scripps Research Institute, United States
Version history
- Received: March 5, 2016
- Accepted: April 6, 2016
- Accepted Manuscript published: April 25, 2016 (version 1)
- Version of Record published: May 9, 2016 (version 2)
Copyright
© 2016, Mavor et al.
This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.
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Determination of ubiquitin fitness landscapes under different chemical stresses in a classroom setting
eLife 5:e15802.
https://doi.org/10.7554/eLife.15802
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