Study of efficacy and longevity of immune response to 3rd and 4th doses of COVID-19 vaccines in patients with cancer: a single arm clinical trial

Abstract

Background: Cancer patients show increased morbidity with COVID-19 and need effective immunization strategies. Many healthcare regulatory agencies recommend administering 'booster' doses of COVID-19 vaccines beyond the standard 2-dose series, for this group of patients. Therefore, studying the efficacy of these additional vaccine doses against SARS-CoV-2 and variants of concern is of utmost importance in this immunocompromised patient population.

Methods: We conducted a prospective single arm clinical trial enrolling patients with cancer that had received two doses of mRNA or one dose of AD26.CoV2.S vaccine and administered a 3rd dose of mRNA vaccine. We further enrolled patients that had no or low responses to three mRNA COVID vaccines and assessed the efficacy of a 4th dose of mRNA vaccine. Efficacy was assessed by changes in anti-spike antibody, T-cell activity and neutralization activity were again assessed at baseline and 4 weeks.

Results: We demonstrate that a 3rd dose of COVID-19 vaccine leads to seroconversion in 57% of patients that were seronegative after primary vaccination series. The immune response is durable as assessed by anti-S antibody titers, T-cell activity and neutralization activity against wild-type SARS-CoV2 and BA1.1.529 at 6 months of follow up. A subset of severely immunocompromised hematologic malignancy patients that were unable to mount an adequate immune response (titer <1000 AU/mL) after the 3rd dose and were treated with a 4th dose in a prospective clinical trial which led to adequate immune-boost in 67% of patients. Low baseline IgM levels and CD19 counts were associated with inadequate seroconversion. Booster doses induced limited neutralization activity against the Omicron variant.

Conclusions: These results indicate that 3rd dose of COVID vaccine induces durable immunity in cancer patients and an additional dose can further stimulate immunity in a subset of patients with inadequate response.

Funding: Leukemia lymphoma society, National Cancer Institute.

Clinical trial identifier: NCT05016622.

Data availability

The data for this clinical trial contains protected health information for the participants that includes a large amount of information as to specific dates/treatments/cancer diagnoses. Therefore, it is prudent to protect this information and it does not seem appropriate to put the information out in the public domain. For example- patients' specific cancer diagnoses, treatment received, COVID-19 vaccine dates can be viewed as sensitive information in the aggregate. If we remove this detailed information from the dataset then the dataset would end up being very limited and not useful for any researcher. Therefore, we believe that making the dataset available through the corresponding author based on individual well-supported requests will allow researchers access to complete data while protecting potentially identifiable patient-level information from the public domain. We are more than happy to share the deidentified database with the reviewers/editors (for review purposes only). If an interested researcher wishes to acquire the data, the aforementioned de-identified dataset can be made available by contacting the corresponding author of the study. While there are no restrictions on data usage per se, we request that future research be done in accordance with standardized guidelines and with local ethics approval. The code is already deposited in GitHubCode availability statement : Computer code has been deposited in GitHub and can be found at https://github.com/kith-pradhan/CovidBooster and https://github.com/kith-pradhan/CovidBooster4th

Article and author information

Author details

  1. Astha Thakkar

    Department of Oncology, Albert Einstein College of Medicine, Bronx, United States
    Competing interests
    No competing interests declared.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-7778-0752
  2. Kith Pradhan

    Department of Epidemiology and Population Health, Albert Einstein College of Medicine, Bronx, United States
    Competing interests
    No competing interests declared.
  3. Benjamin Duva

    Department of Oncology, Albert Einstein College of Medicine, Bronx, United States
    Competing interests
    No competing interests declared.
  4. Juan Manuel Carreno

    Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, United States
    Competing interests
    No competing interests declared.
  5. Srabani Sahu

    Department of Oncology, Albert Einstein College of Medicine, Bronx, United States
    Competing interests
    No competing interests declared.
  6. Victor Thiruthuvanathan

    Department of Oncology, Albert Einstein College of Medicine, Bronx, United States
    Competing interests
    No competing interests declared.
  7. Sean Campbell

    Department of Pathology, Montefiore Medical Center, Bronx, United States
    Competing interests
    No competing interests declared.
  8. Sonia Gallego

    Department of Oncology, Albert Einstein College of Medicine, Bronx, United States
    Competing interests
    No competing interests declared.
  9. Tushar D Bhagat

    Department of Oncology, Albert Einstein College of Medicine, Bronx, United States
    Competing interests
    No competing interests declared.
  10. Johanna Rivera

    Department of Oncology, Albert Einstein College of Medicine, Bronx, United States
    Competing interests
    No competing interests declared.
  11. Gaurav Choudhary

    Department of Oncology, Albert Einstein College of Medicine, Bronx, United States
    Competing interests
    No competing interests declared.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-5365-6706
  12. Raul Olea

    Department of Oncology, Albert Einstein College of Medicine, Bronx, United States
    Competing interests
    No competing interests declared.
  13. Maite Sabalza

    Euroimmun, Mountain Lakes, United States
    Competing interests
    Maite Sabalza, is affiliated with EUROIMMUN and has no financial interests to declare..
  14. Lauren C Shapiro

    Department of Oncology, Albert Einstein College of Medicine, Bronx, United States
    Competing interests
    No competing interests declared.
  15. Matthew Lee

    Department of Oncology, Albert Einstein College of Medicine, Bronx, United States
    Competing interests
    No competing interests declared.
  16. Ryann Quinn

    Department of Oncology, Albert Einstein College of Medicine, Bronx, United States
    Competing interests
    No competing interests declared.
  17. Ioannis Mantzaris

    Department of Oncology, Albert Einstein College of Medicine, Bronx, United States
    Competing interests
    No competing interests declared.
  18. Edward Chu

    Department of Oncology, Albert Einstein College of Medicine, Bronx, United States
    Competing interests
    No competing interests declared.
  19. Britta Will

    Department of Oncology, Albert Einstein College of Medicine, Bronx, United States
    Competing interests
    No competing interests declared.
  20. Liise-anne Pirofski

    Department of Medicine, Albert Einstein College of Medicine, Bronx, United States
    Competing interests
    No competing interests declared.
  21. Florian Krammer

    Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, United States
    Competing interests
    Florian Krammer, The Icahn School of Medicine at Mount Sinai has filed patent applications relating to SARS-CoV-2 serological assays and NDV-based SARS-CoV-2 vaccines which list Florian Krammer as co-inventor. Mount Sinai has spun out a company, Kantaro, to market serological tests for SARS-CoV-2. Florian Krammer has consulted for Merck and Pfizer (before 2020), and is currently consulting for Pfizer, Seqirus, 3rd Rock Ventures and Avimex. The Krammer laboratory is also collaborating with Pfizer on animal models of SARS-CoV-2.(Serological Assay, U.S. Application Serial No. 17/913,783, NDV-HXP-S, U.S. Application Serial No. 17/922,777)..
  22. Amit K Verma

    Department of Oncology, Albert Einstein College of Medicine, Bronx, United States
    For correspondence
    amit.verma@einsteinmed.edu
    Competing interests
    Amit K Verma, Reviewing editor, eLife.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-5408-1673
  23. Balazs Halmos

    Department of Oncology, Albert Einstein College of Medicine, Bronx, United States
    For correspondence
    bahalmos@Montefiore.org
    Competing interests
    No competing interests declared.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-7548-8360

Funding

National Cancer Institute (3P30CA013330-49S3)

  • Balazs Halmos

NCI Community Oncology outreach program (2UG1CA189859-06)

  • Balazs Halmos

leukemia lymphoma society

  • Amit K Verma

Centers of Excellence for Influenza Research and Surveillance (HHSN272201400008C)

  • Florian Krammer

Centers of Excellence for Influenza Research and Response (75N93021C00014)

  • Florian Krammer

Collaborative Influenza Vaccine Innovation Centers (75N93019C00051)

  • Florian Krammer

National Cancer Institute (75N91019D00024)

  • Florian Krammer

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Reviewing Editor

  1. Jameel Iqbal, DaVita Labs, United States

Ethics

Human subjects: Ethics statement:The study was approved by Montefiore-Einstein institutional review board (IRB# 2021-13204). Participants were recruited after referral to the study from their treating oncologists. At the consent visit, patients were provided with a study overview including initial lab draw, vaccine appointment and follow-up at pre-specified time points. The informed consent document included consent for research samples and consent to protect confidential patient information by the personnel approved under the IRB. Any person not involved with the research study did not have access to patient identifying data. De-identified data was allowed to be shared with collaborators and findings from the study be published. The informed consent document also included consent for a future research lab draw should an improved test for SARS-CoV-2 immunity became available. Finally, the consent included patient's right to withdraw from the study at any time. The patient was provided with a copy of the signed informed consent.

Version history

  1. Preprint posted: July 6, 2022 (view preprint)
  2. Received: September 24, 2022
  3. Accepted: March 5, 2023
  4. Accepted Manuscript published: March 28, 2023 (version 1)
  5. Version of Record published: April 25, 2023 (version 2)

Copyright

© 2023, Thakkar et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 981
    views
  • 178
    downloads
  • 9
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Astha Thakkar
  2. Kith Pradhan
  3. Benjamin Duva
  4. Juan Manuel Carreno
  5. Srabani Sahu
  6. Victor Thiruthuvanathan
  7. Sean Campbell
  8. Sonia Gallego
  9. Tushar D Bhagat
  10. Johanna Rivera
  11. Gaurav Choudhary
  12. Raul Olea
  13. Maite Sabalza
  14. Lauren C Shapiro
  15. Matthew Lee
  16. Ryann Quinn
  17. Ioannis Mantzaris
  18. Edward Chu
  19. Britta Will
  20. Liise-anne Pirofski
  21. Florian Krammer
  22. Amit K Verma
  23. Balazs Halmos
(2023)
Study of efficacy and longevity of immune response to 3rd and 4th doses of COVID-19 vaccines in patients with cancer: a single arm clinical trial
eLife 12:e83694.
https://doi.org/10.7554/eLife.83694

Share this article

https://doi.org/10.7554/eLife.83694

Further reading

    1. Medicine
    2. Neuroscience
    Yunlu Xue, Yimin Zhou, Constance L Cepko
    Research Advance

    Retinitis pigmentosa (RP) is an inherited retinal disease in which there is a loss of cone-mediated daylight vision. As there are >100 disease genes, our goal is to preserve cone vision in a disease gene-agnostic manner. Previously we showed that overexpressing TXNIP, an α-arrestin protein, prolonged cone vision in RP mouse models, using an AAV to express it only in cones. Here, we expressed different alleles of Txnip in the retinal pigmented epithelium (RPE), a support layer for cones. Our goal was to learn more of TXNIP’s structure-function relationships for cone survival, as well as determine the optimal cell type expression pattern for cone survival. The C-terminal half of TXNIP was found to be sufficient to remove GLUT1 from the cell surface, and improved RP cone survival, when expressed in the RPE, but not in cones. Knock-down of HSP90AB1, a TXNIP-interactor which regulates metabolism, improved the survival of cones alone and was additive for cone survival when combined with TXNIP. From these and other results, it is likely that TXNIP interacts with several proteins in the RPE to indirectly support cone survival, with some of these interactions different from those that lead to cone survival when expressed only in cones.

    1. Medicine
    Peigen Chen, Haicheng Chen ... Xing Yang
    Research Article

    Caesarean section scar diverticulum (CSD) is a significant cause of infertility among women who have previously had a Caesarean section, primarily due to persistent inflammatory exudation associated with this condition. Even though abnormal bacterial composition is identified as a critical factor leading to this chronic inflammation, clinical data suggest that a long-term cure is often unattainable with antibiotic treatment alone. In our study, we employed metagenomic analysis and mass spectrometry techniques to investigate the fungal composition in CSD and its interaction with bacteria. We discovered that local fungal abnormalities in CSD can disrupt the stability of the bacterial population and the entire microbial community by altering bacterial abundance via specific metabolites. For instance, Lachnellula suecica reduces the abundance of several Lactobacillus spp., such as Lactobacillus jensenii, by diminishing the production of metabolites like Goyaglycoside A and Janthitrem E. Concurrently, Clavispora lusitaniae and Ophiocordyceps australis can synergistically impact the abundance of Lactobacillus spp. by modulating metabolite abundance. Our findings underscore that abnormal fungal composition and activity are key drivers of local bacterial dysbiosis in CSD.