Efficacy and safety of metabolic interventions for the treatment of severe COVID-19: in vitro, observational, and non-randomized open label interventional study

  1. Avner Ehrlich
  2. Konstantinos Ioannidis
  3. Makram Nasar
  4. Ismaeel Abu Alkian
  5. Yuval Daskal
  6. Nofar Atari
  7. Limor Kliker
  8. Nir Rainy
  9. Matan Hofree
  10. Sigal Shafran Tikva
  11. Inbal Houri
  12. Arrigo Cicero
  13. Chiara Pavanello
  14. Cesare R Sirtori
  15. Jordana B Cohen
  16. Julio A. Chirinos
  17. Lisa Deutsch
  18. Merav Cohen
  19. Amichai Gottlieb
  20. Adina Bar-Chaim
  21. Oren Shibolet
  22. Michal Mandelboim
  23. Shlomo Maayan
  24. Yaakov Nahmias  Is a corresponding author
  1. Hebrew University of Jerusalem, Israel
  2. Barzilai Medical Center, Israel
  3. Sheba Medical Center, Israel
  4. Shamir (Assaf Harofeh) Medical Center, Israel
  5. Broad Institute, United States
  6. Jerusalem College of Technology, Israel
  7. Tel Aviv Sourasky Medical Center, Israel
  8. Policlinico S.Orsola-Malpighi, Italy
  9. Università degli Studi di Milano, Italy
  10. Niguarda Hospital, Italy
  11. University of Pennsylvania, United States
  12. BioStats Statistical Consulting Ltd, Israel

Abstract

Background: Viral infection is associated with a significant rewire of the host metabolic pathways, presenting attractive metabolic targets for intervention.

Methods: We chart the metabolic response of lung epithelial cells to SARS-CoV-2 infection in primary cultures and COVID-19 patient samples and perform in vitro metabolism-focused drug screen on primary lung epithelial cells infected with different strains of the virus. We perform observational analysis of Israeli patients hospitalized due to COVID-19 and comparative epidemiological analysis from cohorts in Italy and the Veteran's Health Administration in the United States. In addition, we perform a prospective non-randomized interventional open-label study in which 15 patients hospitalized with severe COVID-19 were given 145 mg/day of nanocrystallized fenofibrate added to the standard of care.

Results: SARS-CoV-2 infection produced transcriptional changes associated with increased glycolysis and lipid accumulation. Metabolism-focused drug screen showed that fenofibrate reversed lipid accumulation and blocked SARS-CoV-2 replication through a PPARa-dependent mechanism in both alpha and delta variants. Analysis of 3,233 Israeli patients hospitalized due to COVID-19 supported in vitro findings. Patients taking fibrates showed significantly lower markers of immunoinflammation and faster recovery. Additional corroboration was received by comparative epidemiological analysis from cohorts in Europe and the United States. A subsequent prospective non-randomized interventional open-label study was carried out on 15 patients hospitalized with severe COVID-19. The patients were treated with 145 mg/day of nanocrystallized fenofibrate in addition to standard-of-care. Patients receiving fenofibrate demonstrated a rapid reduction in inflammation and a significantly faster recovery compared to patients admitted during the same period.

Conclusions: Taken together, our data suggest that pharmacological modulation of PPARa should be strongly considered as a potential therapeutic approach for SARS-CoV-2 infection and emphasizes the need to complete the study of fenofibrate in large randomized controlled clinical trials.

Funding: Funding was provided by European Research Council Consolidator Grants OCLD (project no. 681870) and generous gifts from the Nikoh Foundation and the Sam and Rina Frankel Foundation (YN). The interventional study was supported by Abbott (project FENOC0003).

Clinical trial number: NCT04661930.

Data availability

Software resources: Our custom Cell Analysis CellProfiler® Pipeline is available on https://github.com/avnere/Single-Cell-Analysis-CellProfiler-Pipeline.

The following previously published data sets were used

Article and author information

Author details

  1. Avner Ehrlich

    Grass Center for Bioengineering, Hebrew University of Jerusalem, Jerusalem, Israel
    Competing interests
    Avner Ehrlich, is registered as an investor in a PCT regarding the use of metabolic regulators for COVID. The author has a patent on the use of PPAR agonists to treat COVID. The author has no other competing interests to declare..
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-6339-1665
  2. Konstantinos Ioannidis

    Grass Center for Bioengineering, Hebrew University of Jerusalem, Jerusalem, Israel
    Competing interests
    No competing interests declared.
  3. Makram Nasar

    Division of Infectious Diseases, Barzilai Medical Center, Ashkelon, Israel
    Competing interests
    No competing interests declared.
  4. Ismaeel Abu Alkian

    Division of Infectious Diseases, Barzilai Medical Center, Ashkelon, Israel
    Competing interests
    No competing interests declared.
  5. Yuval Daskal

    Grass Center for Bioengineering, Hebrew University of Jerusalem, Jerusalem, Israel
    Competing interests
    No competing interests declared.
  6. Nofar Atari

    Central Virology Laboratory, Sheba Medical Center, Tel Hashomer, Israel
    Competing interests
    No competing interests declared.
  7. Limor Kliker

    Central Virology Laboratory, Sheba Medical Center, Tel Hashomer, Israel
    Competing interests
    No competing interests declared.
  8. Nir Rainy

    Laboratory Division, Shamir (Assaf Harofeh) Medical Center, Zerifin, Israel
    Competing interests
    No competing interests declared.
  9. Matan Hofree

    Klarman Cell Observatory, Broad Institute, Cambridge,, United States
    Competing interests
    No competing interests declared.
  10. Sigal Shafran Tikva

    Department of Nursing, Jerusalem College of Technology, Jerusalem, Israel
    Competing interests
    No competing interests declared.
  11. Inbal Houri

    Department of Gastroenterology, Tel Aviv Sourasky Medical Center, Tel Aviv, Israel
    Competing interests
    No competing interests declared.
  12. Arrigo Cicero

    Policlinico S.Orsola-Malpighi, Bologna, Italy
    Competing interests
    Arrigo Cicero, has received personal honoraria for statistical consultation from Recipharm, and personal honoraria for manuscript writing from both Sharper Srl and Fidia Pharmaceuticals. The author has no other competing interests to declare..
  13. Chiara Pavanello

    Dipartimento di Scienze Farmacologiche e Biomolecolari, Università degli Studi di Milano, Milano, Italy
    Competing interests
    No competing interests declared.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-5892-9857
  14. Cesare R Sirtori

    Centro Dislipidemie, Niguarda Hospital, Milano, Italy
    Competing interests
    Cesare R Sirtori, is President of Fondazione (totally supported by family). The author has no other competing interests to declare..
  15. Jordana B Cohen

    Perelman School of Medicine, University of Pennsylvania, Philadelphia, United States
    Competing interests
    Jordana B Cohen, received funding from National Institutes of Health (1R01HL157108-01A1,1R01AG074989-01) . The author has no other competing interests to declare..
  16. Julio A. Chirinos

    Perelman School of Medicine, University of Pennsylvania, Philadelphia, United States
    Competing interests
    Julio A. Chirinos, has received consulting honoraria from Sanifit, Bristol Myers Squibb, Merck, Edwards Lifesciences, Bayer, JNJ, Fukuda-Denshi, NGM Bio, Mayo institute of technology and the University of Delaware, and research grants from the National Institutes of Health, Abbott, Microsoft, Fukuda-Denshi and Bristol Myers Squibb. He has received compensation from the American Heart Association and the American College of Cardiology for editorial roles, and visiting speaker honoraria from Washington University, Emory University, University of Utah, the Japanese Association for Cardiovascular Nursing and the Korean Society of Cardiology. The author is named as inventor in a University of Pennsylvania patent for the use of inorganic nitrates/nitrites for the treatment of Heart Failure and Preserved Ejection Fraction and for the use of biomarkers in heart failure with preserved ejection fraction. The author has participated on the Advisory board for Bristol-Myers Squibb Data safety monitoring board for studies by the University of Delaware and UT Southwestern, and is Vice President of North American Artery Society. The author has received research device loans from Atcor Medical, Fukuda-Denshi, Unex, Uscom, NDD Medical Technologies, Microsoft, and MicroVision Medical. The author has no other competing interests to declare..
  17. Lisa Deutsch

    BioStats Statistical Consulting Ltd, Modiin, Israel
    Competing interests
    Lisa Deutsch, is affiliated with BioStats Statistical Consulting Ltd where they work as a Biostatistician. The authors has received payment for statistical work for the manuscript and consulting fees from Tissue Dynamics Ltd. The author has no other competing interests to declare..
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-2445-7561
  18. Merav Cohen

    Grass Center for Bioengineering, Hebrew University of Jerusalem, Jerusalem, Israel
    Competing interests
    No competing interests declared.
  19. Amichai Gottlieb

    Division of Infectious Diseases, Barzilai Medical Center, Ashkelon, Israel
    Competing interests
    No competing interests declared.
  20. Adina Bar-Chaim

    Laboratory Division, Shamir (Assaf Harofeh) Medical Center, Zerifin, Israel
    Competing interests
    No competing interests declared.
  21. Oren Shibolet

    Department of Gastroenterology, Tel Aviv Sourasky Medical Center, Tel Aviv, Israel
    Competing interests
    Oren Shibolet, has received consulting honoraria from Sanofi, Roche and Neopharm, and lectures honoraria from Roche . He is the chairmen of the Israel Association for the study of the liver. The author has no other competing interests to declare..
  22. Michal Mandelboim

    Central Virology Laboratory, Sheba Medical Center, Ramat-Gan, Israel
    Competing interests
    No competing interests declared.
  23. Shlomo Maayan

    Division of Infectious Diseases, Barzilai Medical Center, Ashkelon, Israel
    Competing interests
    No competing interests declared.
  24. Yaakov Nahmias

    Grass Center for Bioengineering, Hebrew University of Jerusalem, Jerusalem, Israel
    For correspondence
    ynahmias@gmail.com
    Competing interests
    Yaakov Nahmias, is registered as an investor in a PCT regarding the use of metabolic regulators for COVID and has a patent on the use of PPAR agonists to treat COVID. The author has no other competing interests to declare..
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-6051-616X

Funding

European Research Council (681870)

  • Yaakov Nahmias

Nikoh Foundation

  • Yaakov Nahmias

Sam and Rina Frankel

  • Yaakov Nahmias

Abbott (FENOC0003)

  • Yaakov Nahmias

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Reviewing Editor

  1. Michael Czech, University of Massachusetts Medical School, United States

Ethics

Human subjects: All procedures performed in studies involving human participants were in accordance with the ethical standards of the institutional and/or national research committee and with the 1964 Helsinki Declaration and its later amendments or comparable ethical standards.In the observational studies - the Israeli study was approved by the local institutional review board of the Hadassah Medical Center (IRB approval number no. HMO 0247-20) and the local institutional review board of the Ichilov Medical Center (IRB approval number no. 0282-20-TLV). The Italian study was reviewed by the local ethical board (AVEC) of the IRCSS S.Orsola-Malpighi University Hospital (approval number no. code LLD-RP2018).The American study was reviewed by the local institutional review board of the Corporal Michael J. Crescenz VA Medical Center (IRB approval number 01654).The interventional study was conducted in accordance with the Good Clinical Practice guidelines of the International Council for Harmonisation E6 and the principles of the Declaration of Helsinki or local regulations, whichever afforded greater patient protection. The study was reviewed and approved by the Barzilai Medical Center Research Ethics Committee (0105-20-BRZ).Statistical analysis of the Israeli studies was done by BioStats Statistical Consulting Ltd. (Maccabim, Israel), funded by the sponsor. Data management is performed in compliance with GCP and 21 CFR part 1. Statistical analyses and reporting are performed in compliance with E6 GCP, E9, and ISO 14155. Independently validated by the author. Statistical analysis of the Italian study was done by Prof. Arrigo Cicero and Dr. Chiara Pavanello. Statistical analysis of the US study was done by Prof. Jordana Cohen.

Version history

  1. Preprint posted: August 12, 2021 (view preprint)
  2. Received: May 3, 2022
  3. Accepted: January 26, 2023
  4. Accepted Manuscript published: January 27, 2023 (version 1)
  5. Version of Record published: February 17, 2023 (version 2)

Copyright

© 2023, Ehrlich et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

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  1. Avner Ehrlich
  2. Konstantinos Ioannidis
  3. Makram Nasar
  4. Ismaeel Abu Alkian
  5. Yuval Daskal
  6. Nofar Atari
  7. Limor Kliker
  8. Nir Rainy
  9. Matan Hofree
  10. Sigal Shafran Tikva
  11. Inbal Houri
  12. Arrigo Cicero
  13. Chiara Pavanello
  14. Cesare R Sirtori
  15. Jordana B Cohen
  16. Julio A. Chirinos
  17. Lisa Deutsch
  18. Merav Cohen
  19. Amichai Gottlieb
  20. Adina Bar-Chaim
  21. Oren Shibolet
  22. Michal Mandelboim
  23. Shlomo Maayan
  24. Yaakov Nahmias
(2023)
Efficacy and safety of metabolic interventions for the treatment of severe COVID-19: in vitro, observational, and non-randomized open label interventional study
eLife 12:e79946.
https://doi.org/10.7554/eLife.79946

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https://doi.org/10.7554/eLife.79946

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