PsimOR14 gene, transcript and protein structures, docking and MD simulations
A Genomic locus containing PsimOR14 and PsimOR15. PsimOR14 gene consists of 1 non-coding and 5 protein coding exons. B. PsimOR14 transcript with 6 exons represented as blue boxes with variable height according to protein-coding (higher) or untranslated (smaller) regions. ORF is marked by blue arrow. C. Transmembrane architecture of PsimOR14. In red are shown seven residues interacting with each of the three studied ligands, the green ellipse shows the intracellular flap the most impacted by ligand binding. D. Modelled apoform of PsimOR14. Red region denotes the binding site identified via docking, green region represents the intracellular flap region. E. Holoforms of PsimOR14 with sticks representing ligands without hydrogens (cyan = neocembrene, red = geranylgeraniol, orange = squalene). F. Relative mean volumes explored by atoms of PsimOR14 per simulation step when liganded with neocembrene, geranylgeraniol and squalene. PsimOR14 apoform represents the baseline zero. Gray lines show the binding site region, the green line delimits the intracellular flap the most affected by ligation. The whole PsimOR14 protein shown on the left, detail on the binding region in the middle and the intracellular flap on the right. Nucleotide and protein sequences of PsimOR14 are provided in Supplementary Table S12 and as NCBI entry under accession OR921181.