This important work describes a set of parameters that give a robust description of shape features of cells in tissues. The evidence for the usefulness of these parameters is solid. The work should be of interest for anybody analyzing epithelial dynamics, but more details about the analysis of experimental images are necessary and some streamlining of the text would increase the accessibility of the material for non-specialists.
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Abstract
P-atic liquid crystal theories offer new perspectives on how cells self-organize and respond to mechanical cues. Understanding and quantifying the underlying orientational orders is therefore essential for unraveling the physical mechanisms that govern tissue dynamics. Due to the deformability of cells this requires quantifying their shape. We introduce rigorous mathematical tools and a reliable framework for such shape analysis. Applying this to segmented cells in MDCK monolayers and computational approaches for active vertex models and multiphase field models allows to demonstrate independence of shape measures and the presence of various p-atic orders at the same time. This challenges previous findings and opens new pathways for understanding the role of orientational symmetries and p-atic liquid crystal theories in tissue mechanics and development.
Introduction
The importance of orientational order in biological systems is becoming increasingly clear, as it plays a critical role in processes such as tissue morphogenesis, collective cell motion, and cellular extrusion. Orientational order results from the shapes of cells and their alignments with neighboring cells. Disruptions in this order, known as topological defects, are often linked to key biological events. For instance, defects—points or lines where the order breaks down—can drive cell extrusion (Saw et al., 2017; Monfared et al., 2023) or trigger morphological changes in tissues (Maroudas-Sacks et al., 2021; Ravichandran et al., 2024). Orientational order is linked to liquid crystal theories (de Gennes and Prost, 1993) and should here be interpreted in a broad sense. Recent evidence extends beyond nematic order, characterized by symmetry under 180°= 2π/2 rotation, to higher-order symmetries such as tetratic order (90°= 2π/4), hexatic order (60°= 2π/6), and even general p-atic orders (2π/p, p being an integer). In biological contexts, nematic order (p = 2) has been widely studied in epithelial tissues (Duclos et al., 2017; Saw et al., 2017; Kawaguchi et al., 2017), linking defects to cellular behaviors and tissue organization. More complex orders, such as tetratic order (p = 4) (Cislo et al., 2023) and hexatic oder (p = 6) (Li and Ciamarra, 2018; Durand and Heu, 2019; Pasupalak et al., 2020; Armengol-Collado et al., 2023; Eckert et al., 2023), have also been observed in experimental systems, offering new perspectives on how cells self-organize and respond to mechanical cues. Understanding and quantifying orientational order and the corresponding liquid crystal theory are therefore essential for unraveling the physical mechanisms that govern biological dynamics.
In physics, p-atic liquid crystals illustrate how particle shape and symmetry influence phase behavior, with seminal works dating back to Onsager’s theories (Onsager, 1949). Most prominently, hexatic order (p = 6) has been postulated and found by experiments and simulations as an intermediate state between crystalline solid and isotropic liquid in (Halperin and Nelson, 1978; Nelson and Halperin, 1979; Murray and Van Winkle, 1987; Bladon and Frenkel, 1995; Zahn et al., 1999; Gasser et al., 2010; Bernard and Krauth, 2011). Other examples are colloidal systems for triadic platelets (Bowick et al., 2017) or cubes (Wojciechowski and Frenkel, 2004), which lead to p-atic order with p = 3 and p = 4, respectively. Even pentatic (p = 5) and heptatic (p = 7) liquid crystals have been engineered (Wang and Mason, 2018; Yu and Mason, 2023). The corresponding liquid crystal theories for p-atic order have only recently been defined (Giomi et al., 2022a; Krommydas et al., 2023) and can also be used in biological contexts. However, while in colloidal systems particle shapes remain fixed, in biological tissues, cells are dynamic: their shapes are irregular, variable, and influenced by internal and external forces. These unique properties make quantifying p-atic order in tissues significantly more challenging, as quantification of the cell shapes is required. We will demonstrate that existing methods, such as bond-orientational order (Nelson and Halperin, 1979) or polygonal shape analysis (Armengol-Collado et al., 2023), might fail to capture the nuances of irregular cell shapes, which has severe consequences on the definition of p-atic order.
To address this, we adapt Minkowski tensors (Mecke, 2000; Schröder-Turk et al., 2013)—rigorous mathematical tools for shape analysis—to quantify p-atic orders in cell monolayers. Minkowski tensors provide robust and sensitive measures of shape anisotropy and orientation, accommodating both smooth and polygonal shapes while remaining resilient to small perturbations. By applying these tools, we re-examine previous conclusions about p-atic orders in epithelial tissues and demonstrate that certain widely accepted results require reconsideration.
Our study leverages a combination of experimental and computational approaches. Experimentally, we analyze confluent monolayers of MDCK (Madin-Darby Canine Kidney) cells. Figure 1 provide a snapshot of a considered monolayer of 235 wild-type MDCK cells, together with their shape classification by Minkowski tensors. The corresponding statistical data and probability distributions of these quantities are shown in Figure 2. These data indicate the presence of all p-atic orders at once with similar probability distributions, mean values and standard devistions. In addition to these experiments we also analyze data of MDCK cells reported in (Armengol-Collado et al., 2023). Computationally, we employ two complementary models for cell monolayers: the active vertex model and the multiphase field model. These approaches allow us to systematically vary parameters such as cell activity and mechanical properties, providing a comprehensive view of how p-atic orders emerges in different contexts.
Shape classification of cells in wild-type MDCK cell monolayer.
a) Raw experimental data. b) - f) Minkowski tensor, visualized using ϑp and qp, Equation 7 (see Methods and materials) for p = 2, 3, 4, 5, 6, respectively. The brightness and the rotation of the p-atic director indicates the magnitude and the orientation, respectively. The visualization uses rotationally-symmetric direction fields (known as p-RoSy fields in computer graphics (Vaxman et al., 2016)).
Statistical data for cell shapes identified in Figure 1 (see Methods and materials).
a) Mean and standard deviation σ(qp) of qp. b) - f) Probability distribution function (PDF) of qp for p = 2, 3, 4, 5, 6, respectively. Kde-plots are used to show the probability distribution.
By combining these robust mathematical tools, experimental insights, and computational models, we establish a reliable framework for quantifying p-atic orders in biological tissues. This framework not only challenges previous findings, e.g. a proposed hexatic-nematic crossover on larger length scales (Armengol-Collado et al., 2023), but also opens new pathways for understanding the role of orientational symmetries in tissue mechanics and development, which require to consider multiple orientational symmetries.
Methods and materials
Shape classification
Minkowski tensors
Essential properties of the geometry of a two-dimensional object are summarized by scalar-valued size measures, so called Minkowski functionals. They are defined by
where 𝒞 is the smooth two-dimensional object, with contour ∂𝒞 and ℋ denotes the curvature of the contour ∂𝒞 (see Figure 3 for a schematic description), as reviewed in Mecke (2000). They describe the area, the perimeter and a curvature-weighted integral of the contour, respectively. Minkowski functionals are also known as intrinsic volumes. For convex objects, they have been shown to be continuous and invariant to translations and rotations. Due to these properties and Hadwiger’s characterization theorem (Hadwiger, 1975), they are natural size descriptors that provide essential and complete information about invariant geometric features. However, these properties also set limits to their use as shape descriptors. Due to rotation invariance, they are unable to capture the orientation of the shape. To describe more complex shape information the scalar-valued Minkowski functionals are extended to a set of tensor-valued descriptors, known as Minkowski tensors. These objects have been investigated both in mathematical (Alesker, 1999; Hug et al., 2008, 2007; McMullen, 1997) and in physical literature (Schröder-Turk et al., 2010a; Kapfer et al., 2012). Using tensor products of the position vectors r and the normal vectors n of the contour ∂ 𝒞, defined as ra ⊙ nb = r ⊙ … ⊙ r ⊙ n ⊙ … ⊙ n, the first considered a times and the last b times with ⊙ denoting the symmetrized tensor product, the Minkowski tensors are defined as
Schematic description of a two-dimensional object 𝒞 with contour ∂𝒞.
We denote the center of mass with xc and vectors from xc to points x on ∂𝒞 with r. The outward-pointing normals are denoted by n, the corresponding angle with the x-axis by θn.
For , so the Minkowski tensors are extensions of the Minkowski functionals. In analogy to Minkowski functionals also Minkowski tensors have been shown to be continuous for convex objects. Also, analogies to Hadwiger’s characterization theorem exist (Alesker, 1999). However, for our purpose, the essential property is the continuity. It makes Minkowski functionals and Minkowski tensors a robust measure as small shape changes lead to small changes in the shape descriptor. Due to this property, Minkowski tensors have been successfully used as shape descriptors in different fields, e.g. in materials science as a robust measure of anisotropy in porous (Schröder-Turk et al., 2010b) and granular material (Schröder-Turk et al., 2013), in astrophysics to describe morphology of galaxies (Beisbart et al., 2002), and in biology to distinguish shapes of different types of neuronal cell networks (Beisbart et al., 2006) and to determine the direction of elongation in multiphase field models for epithelial tissue (Mueller et al., 2019; Wenzel and Voigt, 2021; Happel and Voigt, 2024). However, the mentioned examples exclusively use lower-rank Minkowski tensors a + b ≤ 2. Higher rank tensors have not been considered in such applications but the theory also guarantees robust description of p-atic orientation for p = 3, 4, 5, 6, …. These results hold for smooth contours but also can be extended to polyconvex shapes. Furthermore, known counter-examples for non-convex shapes have very little to no relevance in applications (Kapfer, 2012).
Even if all Minkowski tensors carry important geometric information, one type is particularly interesting and will be considered in the following:
In this case, the symmetrized tensor product agrees with the classical tensor product. If applied to polygonal shapes the Minkowski tensors are related to the Minkowski problem for convex polytops (i.e., generalizations of three-dimensional polyhedra to an arbitrary number of dimensions), which states that convex polytops are uniquely described by the outer normals of the edges and the length of the corresponding edge (Minkowski, 1897). Several generalizations of this result exist (Klain, 2004; Schneider, 2013), which makes the normal vectors a preferable quantity to describe shapes. However, Minkowski tensors contain redundant information, which asks for an irreducible representation. This can be achieved by decomposing the tensor with respect to the rotation group SO(2) (Kapfer, 2012; Mickel et al., 2013; Klatt et al., 2022). Following this approach, one can write
with Ψ𝒞 (u) being proportional to the probability density of the normal vectors. Identifying u ∈ S1 by the angle θ between u and the x−axis allows to write
The Fourier coefficients ψp(𝒞) are the irreducible representations of and can be written as
where θn is the orientation of the outward pointing normal n. The phase of the complex number ψp(𝒞) contains information about the preferred orientation and the absolute value |ψp(𝒞) | is a scalar index. We thus define
with and the imaginary and real part of ψp, respectively, and . We have qp(𝒞) ∈ [0, 1] quantifying the strength of p-atic order. Figure 4 illustrates the concept for polygonal and smooth shapes and Figure 5 illustrates the calculation of qp and ϑp at the example of an equilateral triangle. Note that the constant factor of 1/(2π) in Equation 6 does not influence the result of Equation 7 and is therefore disregarded in Figure 5. Alternative derivations of Equation 7 consider higher order trace-less tensors (Virga, 2015; Giomi et al., 2022a; Armengol-Collado et al., 2023) generated by the normal n. In this case ϑp(𝒞) (orange triatic director in Figure 5 right) correspond to the eigenvector to the negative eigenvalue and ϑp(𝒞) − π/p (gray triatic director in Figure 5 right) to the eigenvector to the positive eigenvalue. For p = 2 this tensor based approach corresponds to the structure tensor (Mueller et al., 2019).
For regular shapes, the corresponding magnitude of qp is always 1.0 and the detected angle is the minimal angle of the p-atic orientation with respect to the x-axis. Note that no shape with q2 = 1.0 is shown, as this would be a line. The visualization is according to Figure 1.
Illustrative description of the definition of q3 for an equilateral triangle.
Considering rotational symmetries under a rotation 120°= 2π/3 means that vectors with an angle of 120°or 240°are treated as equal. Applied to the normals n (left), this means that under this rotational symmetry the normals on the three different edges are equal. Mathematically this is expressed through resulting in the triatic director shown instead of the normals n (middle). One leg of the triatic director always points in the direction as the normal. While only shown for 3 points on each edge, we obtain an orientation with the respective symmetry on every point of the contour ∂𝒞. Considering the line integral along the contour provides the dominating triatic director, shown in the center of mass (right). To get a value between 0.0 and 1.0 for q3 we normalize this integral with the length of the contour, which corresponds to q0. As all triatic directors point in the same direction we obtain q3 = 1.0 in this specific example. To be consistent with other approaches we rotate the resulting triatic director by 60°= π/3 leading to the orange triadic director, which is the quantity used for visualization.
Alternative shape measures
As pointed out in the introduction, p-atic orders have already been identified in biological tissue and model systems. However, the way to quantify rotational symmetry in these works differs from the Minkowski tensors. In Armengol-Collado et al. (2023) the cell contour is approximated by a polygon with V vertices having coordinates xi. The considered polygonal shape analysis is based on the shape function
with ri = xi − xc being the vector from the centroid xc and θi being the orientation of the i-th vertex of the polygon with respect to its center of mass. As the centroid is computed by Armengol-Collado et al. (2023) the only input data are the coordinates of the vertices of the V -sided polygon. Equation 8 captures the degree of regularity of the polygon by its amplitude 0 ≤ |γp| ≤ 1 and its orientation which follows as
with and the imaginary and real part of γp, respectively. Instead of the normals n, the descriptor is based on the position vector r. One might be tempted to think that Equation 9 is related to the irreducible representation of . This is, however, not the case as the weighting in Equation 8 is done with respect to the magnitude of r, while in the weighting is done with respect to the contour integral. Furthermore, in contrast to the Minkowski tensors, Equation 8 takes into account only the vectors at the vertices and not the vectors along the full cell contour. While this seems to be a technical detail, it has severe consequences. The theoretical basis, which guarantees continuity, no longer holds. This leads to unstable behaviour, as illustrated in Figure 6. While the shape of the polygons is almost identical, there is a jump in γ3 and γ4 as we go from four to three vertices. The weighting according to the magnitude cannot cure this, as the magnitude of the shrinking vector is far from zero shortly before this vertex vanishes. In the context of cellular systems, such deformations are a regular occurrence rather than an artificially constructed test case. We will demonstrate the impact while discussing the results and recommend only using robust descriptors such as the Minkowski tensors or their irreducible representations.
Defining p-atic order for deformable objects requires robust shape descriptors.
Shown is the strength of p-atic order for a polygon converging to an equilateral triangle. a) using qp and b) using γp. The considered vectors used in the computations, normals n of the contour for the Minkowski tensors and ri for γp, are shown. Note that the removal of the forth vertex highly influences the value of γp. How xc is calculated - as the mean of the vertex coordinates or as the center of mass of the polygon - can also slightly alter the results. We here used the described approach following Armengol-Collado et al. (2023).
with B denoting the number of bonds and θb the orientation of the bond b. In the context of mono-layer tissues, B is understood as the number of neighbors, and θb as the orientation of the connection of the center of mass of the current cell with the center of mass of the neighbor b (Loewe et al., 2020; Monfared et al., 2023). So cells with the same contour but different neighbor relations lead to different bond order parameters. This characteristic should already disqualify these measures as shape descriptors. However, as discussed in detail in Mickel et al. (2013), they are not robust even for the task they are designed for. We therefore do not discuss them further. The same argumentation holds for other measures which are based on connectivity, as, e.g., considered in (Graner et al., 2008; Merkel et al., 2017).
Coarse-grained quantities
We define coarse-grained quantities, following closely the strategy used in Armengol-Collado et al. (2023). We therefore regard the coarse-grained strength of p-atic order Qp = Qp(x), which is the average of all shape functions (or equivalently ) of cells whose center of mass x lies within a circle with radius R and center x. In a formula this is:
where N is the number of cells. 𝒞 i denotes the i−th cell and Θ denotes the Heaviside step function with Θ(x) = 1 for x > 0 and Θ(x) = 0 otherwise. As in Armengol-Collado et al. (2023) the position x is sampled over a square grid with a spacing close to the mean cell radius R𝒞. We calculate this as with A𝒞 the cell area. Eq. (11) provides the basis for validation of continuous p-atic liquid crystal theories on the tissue scale, e.g. (Giomi et al., 2022a, b). For comparison we also consider the coarse-grained shape function Γp = Γp(x), which is the average of all shape functions γp, which has been considered in (Armengol-Collado et al., 2023) and reads
While Qp and Γp allow to analyze clustering on the tissue scale, their averages and are tightly related to the statistical properties of the probability distributions of qp and | γp|. We consider these properties only for comparison and follow the method used in Armengol-Collado et al. (2023): At first we calculate for every time instance/frame the spatial means, and, by averaging over all grid points. Then we calculate and by averaging in time, so averaging over all and . As in Armengol-Collado et al. (2023) the s.e.m. and the standard derivation refer to the averaging in time. and will be used for the discussion of a proposed hexatic-nematic crossover at larger length scales (Armengol-Collado et al., 2023).
The initial configuration for the active vertex model simulations was built by placing N points randomly in a periodic simulation box of length L × L and ensuring that no two points were within a distance less than rcut from each other. The points were used to create a Voronoi tiling. Typically, such a tiling had cells of very irregular shapes. To make cell shapes more uniform, the centroids of each tile were computed and used as seeds for a new Voronoi tiling. This process was iterated until it converged within the tolerance of 10−5, resulting in a so-called well-centered Voronoi tiling with cells of random shapes but similar sizes. Initial directions of polarity vectors were chosen at random from a uniform distribution. The initial configuration for the multiphase field model simulations considers a regular arrangement of N cells of equal size in a periodic simulation box of length L × L with randomly chosen directions of self-propulsion and simulating for several time steps until the cell shapes appear sufficiently irregular. For both models we consider 100 cells and analyse time instances of the evolution.
Experimental setup
Cell culture
Madin-Darby canine kidney (MDCK) cells were cultured in DMEM (DMEM, low glucose, GlutaMAX™ Supplement, pyruvate) supplemented with 10 % fetal bovine serum (FBS; Gibco) and 100 U/mL penicillin/streptomycin (Gibco) at 37 °C with 5 % CO2. The cell line was tested for mycoplasma.
Monolayer preparation
Cells were seeded on glass-bottom dishes (Mattek) pretreated with 10 µg/mL fibronectin (human plasma; Gibco) in phosphate-buffered saline (PBS, pH 7.4; Gibco). Fibronectin was incubated for 30 min at 37 °C. The initial cell seeding density was sparse. The sample was imaged approximately 24 hours later, when a confluent monolayer had formed.
Live cell imaging
The sample was imaged using a Nikon ECLIPSE Ti microscope equipped with an H201-K-FRAME chamber, heating system (Okolab), and CO2 pump (Okolab), which maintained environmental conditions at 37 °C and 5 % CO2. Phase-contrast images were acquired using a 10×, NA=0.3 Plan Fluor objective and an Andor Neo 5.5 sCMOS camera.
External dataset
As a complementary approach, we analyzed data from the study by Armengol-Collado et al. Armengol-Collado et al. (2023), which included images of MDCK GII monolayers labeled for E-cadherin. These images were made publicly available by the authors via GitHub.
Box 1.
Active vertex model
a) Cell contour of the active vertex model. Red arrows represent the polarity vectors that set each cell’s instantaneous direction of self-propulsion. b) Zoom in on a vertex surrounded by three cells showing how the direction of self-propulsion on a vertex is calculated.
where AC and PC are, respectively, area and perimeter of cell C, A0 and P0 are, respectively, preferred area and perimeter, and KA and KP are, respectively, area and perimeter moduli. For simplicity, it is assumed that all cells have the same values of A0, P0, KA, and KP. The model can be made dimensionless by dividing Equation 13 by ,
where aC = AC /A0 (i.e. is the unit of length), , and is called the shape index, and it has been shown to play a central role in determining if the tissue is in a solid or fluid state (Bi et al., 2015).
One can use Equation 13 to find the mechanical force on a vertex i as , where is the gradient with respect to the position ri of the vertex. The expression for Fi is given in terms of the position of the vertex i and its immediate neighbours (Tong et al., 2023), which makes it fast to compute. Furthermore, cells move on a substrate by being noisily self-propelled along the direction of their planar polarity described by a unit-length vector from which the polarity direction at the vertex is defined, see Box 1 - figure 1 b), where zi is the number of neighbours of vertex i. It is convenient to write , where αi is an angle with the x−axis of the simulation box. The equations of motion for vertex i is a force balance between active, elastic, and frictional forces and are given as
where v0 is the magnitude of the self-propulsion velocity defined as f0/γfr. Furthermore the overdot denotes the time derivative, γfr is the friction coefficient, f0 is the magnitude of the self-propulsion force (i.e., the activity), ξi(t) is Gaussian noise with ⟨ξi(t)⟩ = 0 and ⟨ξi(t)ξj(t′)⟩ = 2Drδijδ(t − t′), where Dr is the rotation diffusion constant and ⟨·⟩ is the ensemble average over the noise. Equations of motion can be non-dimensionalised by measuring time in units of t* = γfr/(KAA0) and force in units of and integrated numerically using the first-order Euler-Maruyama method with timestep τ.
Box 2.
Multiphase field model
a) Cell contours of the multiphase field model. b) Corresponding phase field functions along the horizontal line in a). Colours correspond to the once in a).
The multiphase field modelling approach follows Wenzel and Voigt (2021); Jain et al. (2023, 2024b). Each cell is described by a scalar phase field variable ϕi with i = 1, 2, …, N, where the bulk values ϕi≈ 1 denotes the cell interior, ϕi≈ −1 denotes the cell exterior, and with a diffuse interface of width 𝒪 (ϵ) between them representing the cell boundary. The phase field ϕi follows the conservative dynamics
with the free energy functional ℱ = ℱCH + ℱINT containing the Cahn-Hilliard energy
where the Capillary number Ca is a parameter for tuning the cell deformability, and an interaction energy consisting of repulsive and attractive parts defined as
where In denotes the interaction strength, and ar and aa are parameters to tune contribution of repulsion and attraction. The repulsive term penalises overlap of cell interiors, while the attractive part promotes overlap of cell interfaces. The relation to former formulations is discussed in Happel and Voigt (2024).
Each cell is self-propelled, and the cell activity is introduced through an advection term. The cell velocity field is defined as
where v0 is used to tune the magnitude of activity, and ei = [cos θi(t), sin θi(t)] is its direction. The migration orientation θi(t) evolves diffusively with a drift that aligns to the principal axis of cell’s elongation as , where Dr is the rotational diffusivity, Wi is the Wiener process, βi(t) is the orientation of the cell elongation and α controls the time scale of this alignment.
The resulting system of partial differential equations is considered on a square domain with periodic boundary conditions and is solved by the finite element method within the toolbox AMDiS (Vey and Voigt, 2007; Witkowski et al., 2015) and the parallelization concept introduced in Praetorius and Voigt (2018) is considered, which allows scaling with the number of cells. We in addition introduce a de Gennes factor in ℱCH to ensure ϕi ∈ [−1, 1], see Salvalaglio et al. (2021).
Image analysis
All image data, including both our phase-contrast recordings and the E-cadherin-labeled external dataset, were analyzed using Cellpose Stringer et al. (2021). Segmentation was performed using manually trained models, each tailored to its respective dataset.
Extraction of the contour
Starting out from the segmented images (stored as grayscale images) we extract the contour of the cells using the python package scikit-image (van der Walt et al., 2014). To get rid of pixel-shaped artifacts we smooth the contour by replacing every coordinate by the average over 9 neighboring points in the outline.
Results
Quantifying orientational order in biological tissues can be realized by Minkowsky tensors. The orientation ϑp and the strength of p-atic order qp in Equation 7 can be computed for each cell. Minkowski tensors provide reliable quantities describing how cell shapes align with specific rotational symmetries. As already indicated in Figure 2 situations might occur in which rotational symmetries can not be associated with one specific p, but various symmetries seem to be present at the same time. One might be tempted to compare the probability distribution functions (PDFs) of qp or the mean values for different p in order to identify a dominating p-atic order. This is particularly important for interpreting nematic (p = 2) and hexatic (p = 6) orders, which describe distinct symmetries but have been found to coexist in biological systems. However, a direct comparison of these quantities only makes sense if they are comparable to each other. As already mentioned in Figure 4 this is not the case, as, e.g., q2 = 1.0 cannot be realized for a cell with a given area. Another question one might ask is if these values are independent of each other. To answer this question, we first address statistically if q2 and q6, evaluated for each cell, are independent. Second, we explore how qp depends on key parameters determining tissue mechanics. In a third step we coarsegrain these quantities using the measures Q2 and Q6 in Equation 11. With these quantities we address a proposed hexatic-nematic crossover in epithelial tissue, where hexatic order dominates at small scales and nematic order prevails at larger scales (Eckert et al., 2023; Armengol-Collado et al., 2023, 2024). For these three tasks we analyze simulation data from two computational models, the active vertex model Box 1 and the multiphase field model Box 2. Although these models differ conceptually, both have been validated in studies of cell monolayer mechanics, including solid-liquid transitions, neighbor exchange dynamics, and stress profiles (Fletcher et al., 2014; Alt et al., 2017; Li et al., 2019; Balasubramaniam et al., 2021; Wenzel and Voigt, 2021; Sknepnek et al., 2023; Melo et al., 2023). Key model parameters are the deformability and the activity strength. They are crucial for capturing the coarse-grained properties of confluent tissues (Jain et al., 2023, 2024b). In the active vertex model, deformability is controlled by the target shape index p0, reflecting the balance between cell-cell adhesion and cortical tension. The multiphase field model, by contrast, encodes deformability through the capillary number Ca, which directly incorporates cortical tension. We vary activity strength (v0), the shape index (p0), and the capillary number (Ca), ensuring all parameter combinations remain in the fluid regime. Fluidity was confirmed using by mean square displacement (MSD) (Loewe et al., 2020), neighbor number variance (Wenzel and Voigt, 2021), and the self-intermediate scattering function (Bi et al., 2016).
These studies demonstrate independence of q2 and q6, a general trend of increasing and decreasing for higher activity and deformability, and a consistent decrease of and for increasing coarse-graining radius R. However, as q2 and q6 are not directly comparable and q2 and q6 (and therefore also Q2 and Q6) are independent, the concept of a hexatic-nematic transition - typically requiring a single order parameter - may not be applicable in this context. Even if the proposed hexatic-nematic crossover (Armengol-Collado et al., 2023) is not a formal phase transition, one might expect it to be quantifiable. Yet, its characterization appears to depend strongly on the maximum attainable value of q2, which in turn is influenced by several parameters. To further explore this, we reanalyze the experimental data for MDCK cells from (Armengol-Collado et al., 2023) using Minkowski tensors and compute q2 and q6 as defined in Equation 7. Our analysis also indicates independence of q2 and q6 supporting the same interpretation as above. The statistical properties and probability distributions of these data remain consistent when full cellular boundaries from microscopy images are used. However, an increase in hexatic order (p = 6) is observed when cell shapes are approximated by polygons. This suggests that the dominant hexatic order reported at the cellular scale in Armengol-Collado et al. (2023) may stem from the geometric simplification of cell boundaries. We also compute Q2 and Q6 (Equation 11) and again observed a consistent decrease with increasing coarse-graining radius R, without evidence of a measurable hexatic-nematic crossover. To better understand the differences with the findings in Armengol-Collado et al. (2023) we further analyze both simulation and experimental data using the alternative shape measures γp (Equation 8) and Γp (Equation 12) considered in Armengol-Collado et al. (2023). These measures reproduce the reported results.
Independence of q2 and q6
We examine the distribution of (q2, q6) values across deformability-activity parameter pairs in both computational models (Figure 7). Both models show consistent trends: In near-solid regimes (Figure 7 lower left), q2 and q6 values cluster tightly due to restricted shape fluctuations. However, even in this regime, small q2 values can correspond to either small or large q6 values, and vice versa. In more fluid-like regimes, with higher activity and higher deformability (Figure 7 upper right), q2 and q6 values become highly scattered. Each q2 value spans a broad range of q6 values, and vice versa, indicating their independence. In order to quantify this we compute the distance correlation (Székely et al., 2007), which is a statistical measure quantifying linear and non-linear dependency in given data. Thereby a value of 0.0 corresponds to independence whereas a value of 1.0 corresponds to a strong dependence between the datasets. As can be seen in Figure 7—figure Supplement 1 the obtained distance correlation for q2 and q6 is quite low, underscoring that these quantities are independent. Furthermore the corresponding P-values, as shown in Figure 7—figure Supplement 2 are mostly larger than 0.1, indicating that the weak correlation found in Figure 7— figure Supplement 1 is not significant. This leads to the conclusion that q2 and q6 measure distinct aspects of cell shape anisotropy. As a consequence both orders, nematic and hexatic, need to be considered independently. There cannot be a single parameter which describes a crossover between both.
Nematic (p = 2) and hexatic (p = 6) order are independent of each other.
q6 (y-axis) versus q2 (x-axis) for all cells in the multiphase field model (blue) and active vertex model (red). For each cell and each timestep we plot one point (q2, q6). Each panel corresponds to specific model parameters; Ca and v0 for multiphase field model, and p0 and v0 for the active vertex model, representing deformability and activity, respectively.
A full investigation of potential dependencies between qp for arbitrary combinations of p’s resulting, e.g. from symmetry arguments is beyond the scope of this paper.
Dependence of qp on activity and deformability
We now explore how tissue properties such as activity and deformability influence cell shape and orientational order. We again focus on nematic (p = 2) and hexatic (p = 6) orders, as shown in Figure 8—figure Supplement 1 and Figure 8—figure Supplement 2. Additional results for p = 3, 4, 5 are provided in Appendix 2-Figure 14– Appendix 2-Figure 16 (fixed activity) and Appendix 2-Figure 17– Appendix 2-Figure 19 (fixed deformability). In all plots all cells and all time steps are considered. In Figure 8—figure Supplement 1, we vary deformability (p0 in the active vertex model and Ca in the multiphase field model) while keeping the activity v0 constant. Results are presented for the active vertex model (left column) and the multiphase field model (right column). Activity increases from bottom to top rows. Both models show qualitatively similar trends in the probability distribution functions (PDFs) of q2 and q6. For p = 6, increasing deformability shifts the PDF of q6 to the left, indicating lower mean values. In contrast, for p = 2, higher deformability leads to higher q2 values, reflected in a rightward shift of the PDF. This trend is confirmed by the mean values, shown as a function of deformability (p0 and Ca, respectively) in the inlets. Additionally, the PDFs broaden with increasing deformability, and this effect is more pronounced at lower activity levels. A notable difference between the models is the range of qp values. In the multiphase field model, qp rarely exceeds 0.8 due to the smoother, more rounded cell shapes, whereas the active vertex model often produces higher qp values. In Figure 8—figure Supplement 2, deformability is held constant while activity v0 is varied. Results are again shown for the active vertex model (left column) and the multiphase field model (right column), with increasing activity indicated by brighter colors. Deformability increases from bottom to top rows. The trends mirror those observed in Figure 8— figure Supplement 1. Increasing activity reduces the mean value of q6 while increasing q2, see inlets. The effects of activity are more pronounced at lower deformabilities; at higher deformabilities, differences between parameter regimes diminish. The overall behavior of q2 and q6 is summarized in Figure 8, which shows the mean values and as functions of activity and deformability. For both models:
increases with higher activity or deformability
decreases with higher activity or deformability.
Nematic (p = 2) and hexatic (p = 6) order depend on activity and deformability of the cells.
Mean value for p = 2 (left) and p = 6 (right) as function of deformability p0 or Ca and activity v0 for active vertex model (a) and b)) and multiphase field model (c) and d)).
This behavior is consistent with a trend towards nematic order in more dynamic regimes and towards hexatic order in more constrained, less dynamic regimes. The first is further confirmed by recent findings in analysing T1 transitions and their effect on cell shapes Jain et al., 2024a). These studies suggest that cells transiently elongate when they are undergoing T1 transitions. As the number of T1 transitions increases with activity or deformability Jain et al., 2024b) this elongation contributes to the observed behavior. The second is consistent with the emergence of hexagonal arrangements in solid-like states.
Corresponding results for p = 3, 4, 5 are shown in Appendix 2-Figure 20. While q3, q4, q5 also increase with increasing activity or deformability, the dependency is not as pronounced as for q2.
Coarse-grained quantities Q2 and Q6 and potential hexatic-nematic crossover
For every parameter configuration in the active vertex model (Figure 9—figure Supplement 1) and in the multiphase field model (Figure 9—figure Supplement 2) we compute the coarse-grained quantities Q2 and Q6 for various coarse-graining radii R. One might ask the question if the observed trends for and for higher activity and deformability in Figure 8 are also present on larger scales. We therefore investigate the behavior of and upon varying activity and deformability, see Figure 9. This is exemplified for R/Rcell = 8.0. The trends seen for and - so increasing or decreasing with higher activity or deformability - are lost for and less pronounced for .
Coarse-gained nematic (p = 2) and hexatic (p = 6) order for R/Rcell = 8 depend on activity and deformability of the cells.
Mean value for p = 2 (left) and p = 6 (rigth) as function of deformability p0 or Ca and activity v0 for active vertex model (a) and b)) and multiphase field model (c) and d)).
In Armengol-Collado et al. (2023) a similar approach was used to identify a hexatic-nematic crossover, see (Armengol-Collado et al., 2023, Fig. 3e). This cross-over is considered at the coarse-graining radius at which the two curves for and as a function of R cross. While already conceptually questioned above we consider these investigations to compare with Armengol-Collado et al. (2023). However, regardless of the model there is no consistent trend indicative of a potential crossover. These results question the proposed hexatic-nematic crossover reported in (Armengol-Collado et al., 2023). To further explore this issue we next test the existence of such a crossover directly on the data considered in (Armengol-Collado et al., 2023).
Analyzing experimental data for MDCK cells
The experimental data for confluent monolayers of MDCK GII cells used in (Armengol-Collado et al., 2023) are provided in two different formats, as microscopy images and as polygon data with the calculated vertex points per cell. We consider both formats and all 68 provided configurations. The polygonal data are directly used to compute q2 and q6. The experimental microscopy images are segmented and the extracted cell boundaries are used to compute q2 and q6.
We compute the probability distribution functions (PDFs) of q2 and q6, Figure 10 a) for both data sets. While they are similar if the full cellular contour from the microscopy images is considered the PDFs strongly differ if the polygonal shapes are used. The dominating hexatic (p = 6) order is therefore just a consequence of the approximation of the cell boundaries by polygons. This different behavior, which shows larger values for q6 for the polygonal shapes has the same origin as the difference between the regular and rounded shapes in Figure 4. Further differences result from the different accessible parameter range. While q6 = 1.0 is possible for a perfect hexagon, q2 = 1.0 cannot be realised, as this would correspond to a line.
a): Probability distribution functions (PDFs) using kde-plots, for q2 (yellow) and q6 (blue), once using the polygonal approximation of the cell shape and once using the detailed cell outline obtained from the microscopy pictures. b): q6 (y-axis) versus q2 (x-axis) for all cells from the experimental data in Armengol-Collado et al. (2023), once using the polygonal approximation of the cell shape (blue) and once using the detailed cell outline obtained from the microscopy pictures (red). For each cell and each timestep we plot one point (q2, q6).
As a consequence, the same arguments as discussed above also hold for the experimental data and thus caution against interpretation of q2 and q6 or their coarse-grained quantities Q2 and Q6 as interdependent order parameters. However, in order to compare with Armengol-Collado et al. (2023) we next compute the averaged coarse-grained quantities and for various coarse-graining radii R. In Figure 11 these curves are shown for the polygonal shapes (a)) and the microscopy images (b)). As in Armengol-Collado et al. (2023) we carried out the coarse-graining until the coarse-graining radius corresponds to half of the domain width. In both plots the curves for are almost identical, reflecting the similar PDFs in Figure 10 a). For the slope is similar but the curves are shifted. A potential crossover therefore also depends on the approximation of the cells. In any case, for the considered data no consistent hexatic-nematic crossover can be observed.
On the left side a) we use the polygonal approximation of the cell shape, on the right side b) we use the detailed cell outline obtained from the microscopy pictures. Qp was calculated according to Equation 11, the averaging of this and the choice of R𝒞 follow the description in Coarse-grained quantities. The maximal coarse-graining radius corresponds to half the domain width. A logarithmic scaling was used for both axis. Error bars are obtained as s.e.m..
Sensitivity of the results on the considered shape descriptor
We now demonstrate that the alternative shape descriptors γp in Equation 8, which have been used in (Armengol-Collado et al., 2023), can lead to qualitatively different and thus misleading results. The corresponding figures to Figure 1, Figure 2 and Figure 4 are shown in Appendix 3 Figure 22, Appendix 3 Figure 23 and Appendix 3 Figure 21, respectively. For the experimental data in Figure 1 and Figure 2 we use the Voronoi interface method (Saye and Sethian, 2011, 2012) to calculate the vertices of a polygon approximating the cell shape. The comparison of these figures already indicates differences between the two methods. Such differences can be seen in the approximated cell shapes, the probability distribution functions (PDFs) and more quantitatively also by comparing in Appendix 3 Figure 23a) with in Figure 2a), which, e.g., for p = 6 almost double.
For a more detailed comparison of |γp| and qp we investigate the data from the active vertex model and the polygonal approximation of the cells in Armengol-Collado et al. (2023). We restrict ourselves to this data as for multiphase field data the usage of γp first requires the approximation of a cell by a polygon and we have already seen that this approximation strongly influences the results.
We focus on Figure 8 and the corresponding results in Figure 12. Instead of the monotonic trend for activity and deformability, which was found for exhibits non-monotonic trends, peaking at intermediate values of activity or deformability. For completeness we also provide the corresponding figures to Figure 7 and Figure 9 in Appendix 3 Figure 24 and Appendix 3 Figure 25, respectively.
Mean value as function of deformability p0 and activity v0 for active vertex model.
a) nematic order (p = 2), b) hexatic order (p = 6).
For the polygonal data of the MDCK cells considered in (Armengol-Collado et al., 2023), we compare the coarse-grained quantities and , already considered in Figure 11 a), with and computed from γ2 and γ6 using Equation 12, see Figure 13. For completeness we also provide the corresponding figure to Figure 10 in Appendix 3 Figure 26. Besides minor differences regarding the calculation of RcellFigure 13 corresponds to (Armengol-Collado et al., 2023, Fig.3e). Comparing Figure 11 a) and Figure 13 one might come to the conclusion that there is no hexatic-nematic crossover using and , but there is a hexatic-nematic crossover using and . As the only difference between these two evaluations is the considered shape characterization this analysis adds another argument that the proposed crossover is not a robust physical feature of the system.
We use only the polygonal approximation of the cell shape as γp can only work with polygons. Qp was calculated according to Equation 12, the averaging of this and the choice of R𝒞 follow the description in Coarse-grained quantities. The maximal coarse-graining radius corresponds to half the domain width. A logarithmic scaling was used for both axis. Error bars are obtained as s.e.m..
These results also demonstrate that not only the approximation of the cell boundaries by polygonal shapes heavily influences the characterization of p-atic order but also the considered method to classify the shape might lead to qualitative different results. This confirms the argumentation in Methods and materials that Minkowski tensors should be preferred because of their stability properties.
Discussion
In this study, we introduced Minkowski tensors as a robust and versatile tool for quantifying p-atic order in multicellular systems, particularly in scenarios involving rounded or irregular cell shapes. By applying this framework to extensive datasets from two distinct computational models—the active vertex model and the multiphase field model—we identified universal trends: increasing activity and deformability of the cells enhance nematic order (p = 2) while diminishing hexatic order (p = 6). The consistency of these findings across two models, despite their inherent differences, underscores the generality of our results.
While various shape characterization methods, such as the bond order parameter (Loewe et al., 2020; Monfared et al., 2023) and the shape function γp (Armengol-Collado et al., 2023), have been explored in the literature, we demonstrated that the choice of shape descriptor significantly impacts the conclusions drawn. Such divergences, together with limited mathematical foundations, highlight the limitations of these alternative shape measures in capturing consistent patterns and emphasize the need for stable, reliable shape measures like the Minkowski tensors. As the stability of Minkowski tensors - in contrast to the bond order parameter or the shape function γp - can be mathematically justified Minkowski tensors should be the preferred shape descriptor. This finding is not merely a technical nuance, it leads to qualitative differences. Analyzing experimental data for MDCK cells, e.g., has demonstrated that a strong hexatic order on the cellular scale has no physical origin but is a consequence of the approximation of the cell boundaries by polygonal shapes, which is a requirement to use the shape function γ6. Considering the full cellular boundaries and q6, which is derived from the Minkowski tensors, leads to a different picture, with weaker hexatic order. A critical question in the literature has been whether shape measures for different p-atic orders can be directly compared. While some studies have suggested relationships between γ2 and γ6 (Armengol-Collado et al., 2023), our results refute this notion. We demonstrated that measures like q2 and q6 are independent and capture fundamentally distinct aspects of cell shape and alignment. Comparing them directly is mathematically but also physically and biologically mis-leading. We further tested the hypothesis of a hexatic-nematic crossover at larger length scales by coarse-graining q2 and q6. To discuss such a crossover requires direct comparison of q2 and q6 or their coarse-grain quantities Q2 and Q6, which is conceptually questionable. However, the results showed no consistent trends indicative of a crossover, regardless of the considered model or the experimental data. This leads to the conclusion that the proposed hexatic-nematic crossover in (Armengol-Collado et al., 2023) is not a physical phenomena but specific to the considered method.
Our findings suggest that p-atic orders should be studied independently, also across length scales, as they describe complementary aspects of cellular organization. The coexistence of distinct orientational orders emphasized in different studies—such as nematic (p = 2) (Duclos et al., 2017; Saw et al., 2017; Kawaguchi et al., 2017), tetratic (p = 4) (Cislo et al., 2023), and hexatic (p = 6) (Li and Ciamarra, 2018)—is not contradictory but highlights the rich, multifaceted nature of cellular organization. Rather than searching for a single dominant order, future research should focus on the interplay of different p-atic orders and their associated defects. This suggests to not only consider p-atic liquid crystal theories (Giomi et al., 2022a) for one specific p, but combinations of these models for various p’s. Understanding how these orders interact may reveal how they collectively regulate morphogenetic processes.
Connecting p-atic orders to biological function remains a critical avenue for exploration. While the mathematical independence of q2, q6, and other shape measures precludes the identification of a universal dominant order, biological systems may exhibit context-dependent preferences. For example, a specific p-atic order might correlate with or drive a key morphogenetic event. Investigating these connections could yield insights into how tissues achieve functional organization and adapt to environmental cues. As such, while it is difficult to speak of dominating orders from a mathematical point of view, there could be a dominating order from a biological point of view, meaning the p-atic order connected to the governing biological process.
Data availability
A code illustrating the extraction of the contour and the calculation from qp and ϑp for grayscale images can be found on Zenodo at https://doi.org/10.5281/zenodo.15430268.
Acknowledgements
We acknowledge fruitful discussions with Björn Böttcher, Brendan Tobin and Emma Happel. HJ acknowledges funding by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 945371. RS acknowledges support from the UK Engineering and Physical Sciences Research Council (Award EP/W023946/1). AD acknowledges funding from the Novo Nordisk Foundation (grant No. NNF18SA0035142 and NERD grant No. NNF21OC0068687), Villum Fonden (grant No. 29476), and the European Union (ERC, PhysCoMeT, 101041418). AV acknowledges funding from the German Research Foundation (Award FOR3013 “Vector- and tensor-valued surface PDEs”) and computing resources provided by JSC through MORPH and by ZIH through WIR. Views and opinions expressed are however those of the authors only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them.
Appendix 1
Parameters for the computational models
Values of the dimensionless parameters used in the active vertex model
Values of the dimensionless parameters used in the multiphase-field model simulations
Appendix 2
Results for q3,q4 and q5
Distribution functions in dependence of deformability
PDFs for q3 using kde-plots, for varying deformability p0 or Ca and fixed activity v0.
Inlets show mean values of q3 as function of deformability. a) - d) active vertex model, e) - h) multiphase field model for decreasing activity.
PDFs for q4 using kde-plots, for varying deformability p0 or Ca and fixed activity v0.
Inlets show mean values of q4 as function of deformability. a) - d) active vertex model, e) - h) multiphase field model for decreasing activity.
PDFs for q5 using kde-plots, for varying deformability p0 or Ca and fixed activity v0.
Inlets show mean values of q5 as function of deformability. a) - d) active vertex model, e) - h) multiphase field model for decreasing activity.
Distribution functions in dependence of activity
PDFs for q3 using kde-plots, for varying activity v0 and fixed deformability p0 or Ca.
Inlets show mean values of q3 as function of activity. a) - d) active vertex model and e) - h) multiphase field model for decreasing deformability.
PDFs for q4 using kde-plots, for varying activity v0 and fixed deformability p0 or Ca.
Inlets show mean values of q4 as function of activity. a) - d) active vertex model and e) - h) multiphase field model for decreasing deformability.
PDFs for q5 using kde-plots, for varying activity v0 and fixed deformability p0 or Ca.
Inlets show mean values of q5 as function of activity. a) - d) active vertex model and e) - h) multiphase field model for decreasing deformability.
Summarized behavior in dependence of activity and deformability
Mean value for p = 3 (left), p = 4 (middle) and p = 5 (right) as function of deformability p0 or Ca and activity v0 for active vertex model (a) - c)) and multiphase field model (d) - f)).
Appendix 3
Results using polygonal shape analysis
To visualize the similarities and differences between qp and γp we show the analogue of Figure 4 using the Minkowski tensors in Appendix 3 Figure 21 using polygonal shape analysis. For regular polygons, both shape characterization methods behave in the same way as seen in the first row. For irregular shapes, like in the second row, they already show a different behaviour. Note that the rounded shapes from Figure 4 are missing in Appendix 3 Figure 21 as γp requires a polygon.
The influence of the choice of the shape characterization method is not only visible in the values for single shapes, it can also be seen in the mean and standard deviation. To illustrate this, we use γp to characterize the shapes from the same experimental data as in Figure 1 and Figure 2. The segmented data consists of smooth contours for each cell. As γp only works with vertex coordinates the first step is to identify these. Note that this always leads to the approximation of the cell shape with a polygon and therefore to a simplification of the shape. For finding the vertices we consider the Voronoi interface method (Saye and Sethian, 2011, 2012). Using the so obtained vertices and Equation 8 and Equation 9 leads to the results shown in Appendix 3 Figure 22 and Appendix 3 Figure 23. Compared to Figure 1 and Figure 2, where the Minkowski tensor was used for the same data, we see that the choice of the shape characterization method highly influences the results.
Qualitative consequences of the approach become apparent by comparing Figure 8 with Appendix 3 Figure 12, which, instead of the monotonic trend for activity and deformability, exhibit nonmonotonic trends, peaking at intermediate values of activity or deformability.
Shape classification of cells in wild-type MDCK cell monolayer.
a) Raw experimental data. b) - f) Polygonal shape classification, visualized using γp calculated by Equation 8 and Equation 9 for p = 2, 3, 4, 5, 6, respectively. The brightness and the rotation of the p-atic director indicates the magnitude and the orientation, respectively.
(a) Mean and standard deviation σ(| γp|) of |γp|. b) - f) Probability distribution function (PDF) of |γp| for p = 2, 3, 4, 5, 6, respectively. Kde-plots are used to show the probability distribution. For this first analysis we regard only one frame with 235 cells.
|γ6| (y-axis) versus |γ2| (x-axis) for all cells in the active vertex model.
For each cell and each timestep we plot one point (|γ2|, |γ6|). Each panel corresponds to specific model parameters p0 and v0, representing deformability and activity.
We use the polygonal approximation of the cell shape as γp can only work with polygons. a): Probability distribution functions (PDFs) using kde-plots, for |γ2| (orange) and |γ6| (blue). b): Nematic (p = 2) and hexatic (p = 6) order are independent of eachother. |γ6| (y-axis) versus |γ2| (x-axis) for all cells. For each cell and each timestep we plot one point (|γ2|, |γ6|).
Distance correlation dCor(q2, q6) between q2 and q6 for all cells in the multiphase field model (MPF - purple box) and active vertex model (AV - green box).
Each panel corresponds to specific model parameters; Ca and v0 for multiphase field model, and p0 and v0 for the active vertex model, representing deformability and activity, respectively. We compute one value for every timestep and present the resulting distribution with a box plot. In the box plots the orange line corresponds to the median of the data and the box ranges from the first to the third quartile of the data. The whiskers go from the lowest data point greater than (value of the first quartile) − 1.5 × (Interquartile range) to the highest data point below (value of the third quartile) + 1.5 × (Interquartile range). Outliers are shown with circles.
P-values of the distance correlation between q2 and q6 for all cells in the multiphase field model (MPF - purple box) and active vertex model (AV - green box).
Each panel corresponds to specific model parameters; Ca and v0 for multiphase field model, and p0 and v0 for the active vertex model, representing deformability and activity, respectively. We compute one value for every timestep and present the resulting distribution with a box plot. In the box plots the orange line corresponds to the median of the data and the box ranges from the first to the third quartile of the data. The whiskers go from the lowest data point greater than (value of the first quartile) − 1.5 ×(Interquartile range) to the highest data point below (value of the third quartile) + 1.5 × (Interquartile range). Outliers are shown with circles. 0.05 and 0.1 are marked with a grey dotted/grey dashed line to guide the eye.
Nematic (p = 2) and hexatic (p = 6) order depend on deformability of the cells.
Probability distribution functions (PDFs) for q2 (shades of orange) and q6 (shades of blue), using kde-plots, for varying deformability p0 or Ca and fixed activity v0. Inlets show mean values of q2 and q6 as function of deformability. a) - d) active vertex model, e) - h) multiphase field model for decreasing activity.
Nematic (p = 2) and hexatic (p = 6) order depend on activity of the cells.
Probability distribution functions (PDFs) for q2 (shades of orange) and q6 (shades of blue), using kde-plots, for varying activity v0 and fixed deformability p0 or Ca. Inlets show mean values of q2 and q6 as function of activity. a) - d) active vertex model and e) - h) multiphase field model for decreasing deformability.
versus for different coarse graining radii in the active vertex model.
Qp was calculated according to Equation 11, the averaging of this and the choice of R𝒞 follow the description in Coarse-grained quantities. The maximal coarse-graining radius corresponds to half the domain width. Each panel corresponds to specific model parameters; p0 and v0, representing deformability and activity. A logarithmic scaling was used for both axis. Error bars are obtained as s.e.m..
versus for different coarse graining radii in the multiphase field model.
Qp was calculated according to Equation 11, the averaging of this and the choice of R𝒞 follow the description in Coarse-grained quantities. The maximal coarse-graining radius corresponds to half the domain width. Each panel corresponds to specific model parameters; Ca and v0, representing deformability and activity. A logarithmic scaling was used for both axis. Error bars are obtained as s.e.m..
a) and the cell shapes used for the shape quantification, b) detailed cell outline obtained from the microscopy image, c) polygonal approximation of the cell shape. Shown for frame number 1.
Distance correlation dCor(q2, q6) between q2 and q6.
On the left side a) we use the polygonal approximation of the cell shape, on the right side b) we use the detailed cell outline obtained from the microscopy pictures. We compute one value for every frame and present the resulting distribution with a box plot. In the box plots the orange line corresponds to the median of the data and the box ranges from the first to the third quartile of the data. The whiskers go from the lowest data point greater than (value of the first quartile) − 1.5 × (Interquartile range) to the highest data point below (value of the third quartile) + 1.5 × (Interquartile range). Outliers are shown with circles.
P-values of the distance correlation between q2 and q6.
On the left side a) we use the polygonal approximation of the cell shape, on the right side b) we use the detailed cell outline obtained from the microscopy pictures. We compute one value for every frame and present the resulting distribution with a box plot. In the box plots the orange line corresponds to the median of the data and the box ranges from the first to the third quartile of the data. The whiskers go from the lowest data point greater than (value of the first quartile) − 1.5 × (Interquartile range) to the highest data point below (value of the third quartile) + 1.5 × (Interquartile range). Outliers are shown with circles. 0.05 and 0.1 are marked with a grey dotted/grey dashed line to guide the eye.
Distance correlation dCor(|γ2|, | γ6|) for the simulation data of the active vertex model.
Each panel corresponds to specific model parameters p0 and v0, representing deformability and activity. We compute one value for every timestep and present the resulting distribution with a box plot. In the box plots the orange line corresponds to the median of the data and the box ranges from the first to the third quartile of the data. The whiskers go from the lowest data point greater than (value of the first quartile) − 1.5 × (Interquartile range) to the highest data point below (value of the third quartile) + 1.5 × (Interquartile range). Outliers are shown with circles.
P-values of the distance correlation for the simulation data of the active vertex model.
Each panel corresponds to specific model parameters p0 and v0, representing deformability and activity. We compute one value for every timestep and present the resulting distribution with a box plot. In the box plots the orange line corresponds to the median of the data and the box ranges from the first to the third quartile of the data. The whiskers go from the lowest data point greater than (value of the first quartile) − 1.5 × (Interquartile range) to the highest data point below (value of the third quartile) + 1.5 × (Interquartile range). Outliers are shown with circles. 0.05 and 0.1 are marked with a grey dotted/grey dashed line to guide the eye.
versus for different coarse graining radii in the active vertex model.
Γp was calculated according to Equation 12, the averaging of this and the choice of R𝒞 follow the description in Coarse-grained quantities. The maximal coarse-graining radius corresponds to half the domain width. Each panel corresponds to specific model parameters; p0 and v0, representing deformability and activity. A logarithmic scaling was used for both axis. Error bars are obtained as s.e.m..
We use the polygonal approximation of the cell shape as γp can only work with polygons. We compute one value for every frame and present the resulting distribution with a box plot. In the box plots the orange line corresponds to the median of the data and the box ranges from the first to the third quartile of the data. The whiskers go from the lowest data point greater than (value of the first quartile) − 1.5 × (Interquartile range) to the highest data point below (value of the third quartile) + 1.5 × (Interquartile range). Outliers are shown with circles.
We use the polygonal approximation of the cell shape as γp can only work with polygons. We compute one value for every frame and present the resulting distribution with a box plot. In the box plots the orange line corresponds to the median of the data and the box ranges from the first to the third quartile of the data. The whiskers go from the lowest data point greater than (value of the first quartile) − 1.5 × (Interquartile range) to the highest data point below (value of the third quartile) + 1.5 × (Interquartile range). Outliers are shown with circles.
References
Alert R
Trepat X.
2020Physical models of collective cell migrationAnnual Review of Condensed Matter Physics11:77–101Google Scholar
Alesker S.
1999Description of continuous isometry covariant valuations on convex setsGeometriae Dedicata74:241–248Google Scholar
Alt S
Ganguly P
Salbreux G.
2017Vertex models: from cell mechanics to tissue morphogenesisPhilosophical Transactions of the Royal Society B: Biological Sciences372:20150520Google Scholar
Armengol-Collado JM
Carenza LN
Eckert J
Krommydas D
Giomi L.
2023Epithelia are multiscale active liquid crys-talsNature Physics19:1773–1779Google Scholar
2021Investigating the nature of active forces in tissues reveals how contractile cells can form extensile monolayersNature Materials20:1156–1166Google Scholar
Beisbart C
Barbosa MS
Wagner H
Costa LdF.
2006Extended morphometric analysis of neuronal cells with minkowski valuationsThe European Physical Journal B52:531–546Google Scholar
Beisbart C
Dahlke R
Mecke K
Wagner H.
2002Vector- and tensor-valued descriptors for spatial patternsIn:
Mecke K
Stoyan D
, editors. Morphology of Condensed Matter: Physics and Geometry of Spatially Complex Systems Berlin, Heidelberg: Springer Berlin Heidelberg pp. 238–260Google Scholar
Bernard EP
Krauth W.
2011Two-step melting in two dimensions: first-order liquid-hexatic transitionPhysical Review Letters107:155704Google Scholar
Bi D
Yang X
Marchetti MC
Manning ML
2016Motility-driven glass and jamming transitions in biological tissuesPhysical Review X6:021011Google Scholar
Bi D
Lopez J
Schwarz JM
Manning ML
2015A density-independent rigidity transition in biological tissuesNature Physics11:1074–1079Google Scholar
Bladon P
Frenkel D.
1995Dislocation unbinding in dense two-dimensional crystalsPhysical Review Letters74:2519–2522Google Scholar
Bowick MJ
Manyuhina OV
Serafin F.
2017Shapes and singularities in triatic liquid-crystal vesiclesEurophysics Letters117:26001Google Scholar
Cislo DJ
Yang F
Qin H
Pavlopoulos A
Bowick MJ
Streichan SJ
2023Active cell divisions generate fourfold orienta-tionally ordered phase in living tissueNature Physics19:1201–1210Google Scholar
Das A
Sastry S
Bi D.
2021Controlled neighbor exchanges drive glassy behavior, intermittency, and cell streaming in epithelial tissuesPhysical Review X11:041037Google Scholar
Duclos G
Erlenkämper C
Joanny JF
Silberzan P.
2017Topological defects in confined populations of spindle-shaped cellsNature Physics13:58–62Google Scholar
2023Hexanematic crossover in epithelial monolayers depends on cell adhesion and cell densityNature Communications14:5762Google Scholar
Farhadifar R
Röper JC
Aigouy B
Eaton S
Jülicher F.
2007The influence of cell mechanics, cell-cell interactions, and proliferation on epithelial packingCurrent biology17:2095–2104Google Scholar
Fletcher AG
Osterfield M
Baker RE
Shvartsman SY
2014Vertex models of epithelial morphogenesisBiophysical Journal106:2291–2304Google Scholar
Gasser U
Eisenmann C
Maret G
Keim P.
2010Melting of crystals in two dimensionsChemPhysChem11:963–970Google Scholar
de Gennes PG
Prost J.
1993The physics of liquid crystalsOxford: Clarendon Press Google Scholar
Giomi L
Toner J
Sarkar N.
2022Hydrodynamic theory of p-atic liquid crystalsPhysical Review E106:024701Google Scholar
Giomi L
Toner J
Sarkar N.
2022Long-ranged order and flow alignment in sheared p-atic liquid crystalsPhysical Review Letters129:067801Google Scholar
Graner F
Dollet B
Raufaste C
Marmottant P.
2008Discrete rearranging disordered patterns, part I: robust statistical tools in two or three dimensionsThe European physical journal E, Soft matter25:349–369Google Scholar
Hadwiger H.
1975Vorlesungen über Inhalt, Oberfläche und IsoperimetrieSpringer Berlin Heidelberg Google Scholar
Hakim V
Silberzan P.
2017Collective cell migration: a physics perspectiveReports on Progress in Physics80:076601Google Scholar
Halperin BI
Nelson DR
1978Theory of two-dimensional meltingPhysical Review Letters41:121–124Google Scholar
Happel L
Voigt A.
2024Coordinated motion of epithelial layers on curved surfacesPhysical Review Letters132:078401Google Scholar
Honda H.
1983Geometrical models for cells in tissuesInternational review of cytology81:191–248Google Scholar
Honda H
Nagai T.
2022Mathematical models of cell-based morphogenesisSpringer Google Scholar
Hug D
Schneider R
Schuster R.
2007The space of isometry covariant tensor valuationsSt Petersburg Mathematical Journal19:137–158Google Scholar
Hug D
Schneider R
Schuster R.
2008Integral geometry of tensor valuationsAdvances in Applied Mathematics41:482–509Google Scholar
Jain HP
Hu RDJG
Angheluta L.
2024Emergent directional migration due to interplay between cell shape and T1 transitionsUnder reviewGoogle Scholar
Jain HP
Voigt A
Angheluta L.
2023Robust statistical properties of T1 transitions in a multi-phase field model of cell monolayersScientific Reports13:10096Google Scholar
Jain HP
Voigt A
Angheluta L.
2024From cell intercalation to flow, the importance of T1 transitionsPhysical Review Research6:033176Google Scholar
Kapfer S.
2012Morphometry and Physics of Particulate and Porous Media, PhD thesis,FAU Erlangen-Nürnberg Google Scholar
Kapfer SC
Mickel W
Mecke K
Schröder-Turk GE.
2012Jammed spheres: Minkowski tensors reveal onset of local crystallinityPhysical Review E85:030301Google Scholar
Kawaguchi K
Kageyama R
Sano M.
2017Topological defects control collective dynamics in neural progenitor cell culturesNature545:327–331Google Scholar
Killeen A
Bertrand T
Lee CF
2022Polar fluctuations lead to extensile nematic behavior in confluent tissuesPhysical Review Letters128:078001Google Scholar
Klain DA
2004The minkowski problem for polytopesAdvances in Mathematics185:270–288Google Scholar
Klatt MA
Hörmann M
Mecke K.
2022Characterization of anisotropic gaussian random fields by minkowski tensorsJournal of Statistical Mechanics: Theory and Experiment2022:043301Google Scholar
Koride S
Loza AJ
Sun SX
2018Epithelial vertex models with active biochemical regulation of contractility can explain organized collective cell motilityAPL bioengineering2Google Scholar
Krommydas D
Carenza LN
Giomi L.
2023Hydrodynamic enhancement of p-atic defect dynamicsPhysical Review Letters130:098101Google Scholar
Li X
Das A
Bi D.
2019Mechanical heterogeneity in tissues promotes rigidity and controls cellular invasionPhysical Review Letters123:058101Google Scholar
Li YW
Ciamarra MP
2018Role of cell deformability in the two-dimensional melting of biological tissuesPhysical Review Materials2:045602Google Scholar
Loewe B
Chiang M
Marenduzzo D
Marchetti MC
2020Solid-liquid transition of deformable and overlapping active particlesPhysical Review Letters125:038003Google Scholar
Maroudas-Sacks Y
Garion L
Shani-Zerbib L
Livshits A
Braun E
Keren K.
2021Topological defects in the nematic order of actin fibres as organization centres of hydra morphogenesisNature Physics17:251–259Google Scholar
McMullen P.
1997Isometry covariant valuations on convex bodiesIn: In: Second international conference in stochastic geometry, convex bodies and empirical measures, Agrigento, Italy, September 9–14, 1996 Palermo: Circolo Matematico di Palermo pp. 259–271Google Scholar
Mecke KR
2000Additivity, convexity, and beyond: Applications of minkowski functionals in statistical physicsIn:
Mecke KR
Stoyan D
, editors. Statistical Physics and Spatial Statistics Berlin, Heidelberg: Springer Berlin Heidelberg pp. 111–184Google Scholar
Melo S
Guerrero P
Moreira Soares M
Bordin JR
Carneiro F
Carneiro P
Dias MB
Carvalho J
Figueiredo J
Seruca R
Travasso RDM
2023The ECM and tissue architecture are major determinants of early invasion mediated by E-cadherin dysfunctionCommunications Biology6:1132Google Scholar
Merkel M
Etournay R
Popović M
Salbreux G
Eaton S
Jülicher F.
2017Triangles bridge the scales: Quantifying cellular contributions to tissue deformationPhysical Review E95:032401Google Scholar
Mickel W
Kapfer SC
Schröder-Turk GE
Mecke K.
2013Shortcomings of the bond orientational order parameters for the analysis of disordered particulate matterThe Journal of Chemical Physics138:044501Google Scholar
Minkowski H.
1897Allgemeine Lehrsätze über die convexen PolyederNachrichten von der Gesellschaft der Wissenschaften zu Göttingen, Mathematisch-Physikalische Klasse1897:198–220Google Scholar
2021Phase-field modeling of individual and collective cell migrationArchives of Computational Methods in Engineering28:311–344Google Scholar
Mueller R
Yeomans JM
Doostmohammadi A.
2019Emergence of active nematic behavior in monolayers of isotropic cellsPhysical Review Letters122:048004Google Scholar
Murray CA
Van Winkle DH
1987Experimental observation of two-stage melting in a classical two-dimensional screened coulomb systemPhysical Review Letters58:1200–1203Google Scholar
Nelson DR
Halperin BI
1979Dislocation-mediated melting in two dimensionsPhysical Review B19:2457–2484Google Scholar
Onsager L.
1949The effects of shape on the interaction of colloidal particalesAnnals of the New York Academy of Sciences51:627–659Google Scholar
Pasupalak A
Yan-Wei L
Ni R
Ciamarra MP
2020Hexatic phase in a model of active biological tissuesSoft matter16:3914–3920Google Scholar
Praetorius S
Voigt A.
2018Collective cell behaviour – a cell-based parallelisation approach for a phase field active polar gel modelNo. 49 in NIC Series, Jülich: Forschungszentrum Jülich GmbH, ZentralbibliothekGoogle Scholar
Ravichandran Y
Vogg M
Kruse K
Pearce DJ
Roux A.
2024Topology changes of the regenerating hydra define actin nematic defects as mechanical organizers of morphogenesisbioRxivGoogle Scholar
Salvalaglio M
Voigt A
Wise SM
2021Doubly degenerate diffuse interface models of surface diffusionMathematical Methods in the Applied Sciences44:5385–5405Google Scholar
Saw TB
Doostmohammadi A
Nier V
Kocgozlu L
Thampi S
Toyama Y
Marcq P
Lim CT
Yeomans JM
Ladoux B.
2017Topological defects in epithelia govern cell death and extrusionNature544:212–216Google Scholar
Saye RI
Sethian JA
2012Analysis and applications of the voronoi implicit interface methodJournal of Computational Physics231:6051–6085Google Scholar
Saye RI
Sethian JA
2011The voronoi implicit interface method for computing multiphase physicsProceedings of the National Academy of Science108:19498–19503Google Scholar
2021Cellpose: a generalist algorithm for cellular segmentationNature Methods18:100–106Google Scholar
Székely GJ
Rizzo ML
Bakirov NK
2007Measuring and testing dependence by correlation of distancesThe Annals of Statistics35:2769–2794Google Scholar
Tong S
Sknepnek R
Košmrlj A.
2023Linear viscoelastic response of the vertex model with internal and external dissipation: Normal modes analysisPhysical Review Research5:013143Google Scholar
Vaxman A
Campen M
Diamanti O
Panozzo D
Bommes D
Hildebrandt K
Ben-Chen M.
2016Directional field synthesis, design, and processingComputer Graphics Forum35:545–572Google Scholar
Vey S
Voigt A.
2007AMDiS: Adaptive multidimensional simulationsComputing and Visualization in Science10:57–67Google Scholar
Virga EG
2015Octupolar order in two dimensionsThe European Physical Journal E38Google Scholar
2018A Brownian quasi-crystal of pre-assembled colloidal penrose tilesNature561:94–99Google Scholar
Wenzel D
Voigt A.
2021Multiphase field models for collective cell migrationPhysical Review E184:054410Google Scholar
Witkowski T
Ling S
Praetorius S
Voigt A.
2015Software concepts and numerical algorithms for a scalable adaptive parallel finite element methodAdvances in Computational Mathematics41:1145–1177Google Scholar
Wojciechowski KW
Frenkel D.
2004Tetratic phase in the planar hard square system?Computational Methods in Science and Technology10:235–255Google Scholar
Yu T
Mason TG
2023Heptatic liquid quasi-crystals by colloidal lithographic pre-assemblyJournal of Colloid and Interface ScienceGoogle Scholar
Zahn K
Lenke R
Maret G.
1999Two-stage melting of paramagnetic colloidal crystals in two dimensionsPhysical Review Letters82:2721–2724Google Scholar
Article and author information
Author information
Lea Happel†
Institute of Scientific Computing, TU Dresden, Dresden, Germany
†These authors contributed equally to this work
Griseldis Oberschelp†
Institute of Scientific Computing, TU Dresden, Dresden, Germany
†These authors contributed equally to this work
Valeriia Grudtsyna
Niels Bohr Institute, University of Copenhagen, Kobenhavn, Denmark
Harish P Jain
Njord Centre, Physics Department, University of Oslo, Oslo, Norway
Rastko Sknepnek
School of Life Sciences, University of Dundee, Dundee, United Kingdom, School of Science and Engineering, University of Dundee, Dundee, United Kingdom
Institute of Scientific Computing, TU Dresden, Dresden, Germany, Center of Systems Biology Dresden, Dresden, Germany, Cluster of Excellence, Physics of Life, TU Dresden, Dresden, Germany
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