Abstract
Fusarium graminearum is a global pathogen responsible for Fusarium head blight (FHB) in wheat, causing substantial yield losses and producing the mycotoxin deoxynivalenol (DON), which poses a threat to both human and animal health. Drosophila melanogaster Misato-Like protein (DML1) plays a critical role in regulating mitochondrial function, yet its function in filamentous fungi remains unexplored. In this study, we characterized FgDML1 in F. graminearum. FgDML1 interacts with the mitochondrial fission and fusion protein FgDnm1 to maintain mitochondrial stability, thereby positively regulating acetyl-CoA levels and ATP synthesis, which influences toxisome formation and ultimately affects DON toxin biosynthesis. Additionally, FgDML1 is involved in the regulation of toxin biosynthetic enzyme expression. In the ΔFgDML1 mutant, Complex III enzyme activity decreased, overexpression of complex III assembly factors FgQCR2, FgQCR8, and FgQCR9 may induce conformational changes in the Qi-site protein, specifically altering the sensitivity of F. graminearum to respiratory inhibitor cyazofamid not Qo-site inhibitor pyraclostrobin and other fungicides. Furthermore, the loss of FgDML1 leads to defects in nutrient utilization, as well as in asexual and sexual reproduction, and pathogenicity. In conclusion, this study identifies a novel regulatory role for FgDML1 in DON toxin biosynthesis and cyazofamid sensitivity in F. graminearum. Our study provides a theoretical framework for understanding DON biosynthesis regulation in F. graminearum and identifies potential molecular targets for FHB control.
Introduction
Fusarium head blight (FHB), caused by Fusarium graminearum, is a devastating fungal disease that affects cereal crops, leading to significant yield losses in wheat-growing regions worldwide (Dean et al., 2012). This disease is particularly concerning due to the production of various mycotoxins, including trichothecenes and zearalenone, during fungal infection (Hai et al., 2023). Among these, deoxynivalenol (DON), a type of trichothecene, is the most commonly detected mycotoxin (Merhej et al., 2011a). The DON toxin poses a serious threat to both human and animal health, significantly compromising immune and reproductive systems(EFSA Panel on Contaminants in the Food Chain (CONTAM) et al., 2017). Chronic exposure to DON can lead to anorexia, neurological disorders, and immune dysregulation, while acute high-dose exposure may result in vomiting, diarrhea, neurological disturbances, and even miscarriage or stillbirth (Sumarah, 2022; Zhang et al., 2024). Studies have demonstrated a positive correlation between elevated DON levels and the prevalence of FHB in infected crops (Bönnighausen et al., 2019; Ilgen et al., 2009; Mudge et al., 2006). As FHB continues to spread and its severity increases, DON contamination is emerging as a critical global concern (Duan et al., 2020; Liu et al., 2016). This highlights the need for effective strategies to manage and mitigate the impact of both the disease and the associated mycotoxin contamination.
The absence of resistant cultivars necessitates reliance on chemical methods as the primary approach for controlling FHB (Liu et al., 2019). However, the inappropriate application of fungicides has led to the emergence of resistance, particularly against carbendazim, tebuconazole, and pyraclostrobin (Andrade et al., 2022; Yi et al., 2023; Zhou et al., 2024). Notably, carbendazim has been demonstrated to stimulate the biosynthesis of deoxynivalenol (DON) toxin, especially in fungicide-resistant populations of F. graminearum (Li et al., 2019; Zhou et al., 2020). Similarly, pyraclostrobin significantly promotes DON biosynthesis, with no selectivity between resistant and sensitive strains. Although tebuconazole has not been directly implicated in inducing DON production, it is classified as a fungicide with a moderate risk of resistance development (Duan et al., 2020). Field observations have revealed diverse resistance mechanisms to tebuconazole, complicating management efforts (Liu et al., 2011; Zhao et al., 2021). The potential evolution of resistance to tebuconazole is particularly concerning, as it could undermine its efficacy and exacerbate the challenge of controlling DON contamination. There is an urgent need for a fungicide that has not yet been used in F. graminearum to address the DON toxin contamination caused by fungicide resistance. Cyazofamid is a mitochondrial respiratory chain complex III inhibitor with demonstrated efficacy in controlling fungal diseases. It specifically binds to the Qi site of complex III, blocking the reduction of ubiquinone and inhibiting ATP synthesis, thereby exerting its fungicidal effect (Li et al., 2014; Mitani et al., 2001). However, it remains unclear whether other proteins within the intricate regulatory network of the respiratory chain play a role in modulating fungal sensitivity to cyazofamid. Further investigations are needed to elucidate the potential involvement of these regulatory components.
The synthesis of deoxynivalenol (DON) toxin is primarily regulated by genes involved in trichothecene biosynthesis, known as FgTRIs. Many of these FgTRI genes have been well characterized (Merhej et al., 2011b). The initial step in DON synthesis is catalyzed by the trichothecene synthase FgTri5, which facilitates the cyclization of farnesyl pyrophosphate (FPP) to form trichodiene (TDN) (Kimura et al., 2007). However, before this catalytic process can occur, the organism must first obtain sufficient ATP from the mitochondria. ATP is critical not only for the basic cellular functions but also for driving several key reactions in the isoprenoid biosynthesis pathway. Specifically, ATP is required for the enzymatic conversion of precursors, leading to the production of FPP, a vital intermediate in the trichothecene biosynthesis pathway. The availability of ATP therefore directly impacts the efficient synthesis of FPP, which, in turn, regulates the downstream production of DON toxin. Without an adequate supply of ATP, these biosynthetic pathways cannot proceed efficiently, thus hindering the synthesis of both the precursor molecules and the final toxin product (Alexander et al., 2009).
Drosophila melanogaster Misato-Like protein (DML1) encodes a Misato-like protein in Saccharomyces cerevisiae, an essential factor involved in mitochondrial DNA (mtDNA) inheritance. In addition to its role in mtDNA maintenance, DML is implicated in mitochondrial compartmentalization and chromosome segregation. The protein shares structural features with members of the GTPase family, suggesting potential involvement in GTP-dependent processes (Gurvitz et al., 2002). In Homo sapiens, the DML protein is localized to the mitochondria, where silencing of DML results in a transition from a networked mitochondrial morphology to a fragmented form. This indicates that DML plays a critical role in mitochondrial distribution, morphological fusion, and overall mitochondrial dynamics (Kimura and Okano, 2007a). In prokaryotes, the homologous protein FtsZ, which shares functional similarities with DML, has been identified as a target for antimicrobial agents (Huang et al., 2007; Vollmer, 2006). However, despite these insights from studies in the aforementioned organisms, the exact role of DML in filamentous fungi remains undetermined.
This study systematically characterized the functional roles of Drosophila melanogaster Misato-Like protein (FgDML1) in F. graminearum, including mycelial growth, asexual development, and sexual reproduction. More importantly, we found that FgDML1 reduces DON toxin synthesis by decreasing the enzyme activity of complex III, reducing ATP synthesis, and lowering acetyl-CoA accumulation. Furthermore, the deletion of FgDML1 results in compensatory upregulation of complex III assembly factors, which may alter the conformation of the Qi site protein and subsequently modulates sensitivity to cyazofamid.
Results
Identification, deletion, and complementation of FgDML1
The Drosophila melanogaster Misato-Like (DML1) protein from S. cerevisiae was used as a query for a BLAST search against the Fusarium genome database, resulting in the identification of the putative DML1 gene FgDML1 (FGSG_05390) in F. graminearum. The FgDML1 gene is 1455 bp in length, contains three introns, and encodes a 484-amino acid protein with 23.88% homology to its counterpart in S. cerevisiae. Phylogenetic analysis was performed using DML1 sequences from other species obtained via NCBI, and a phylogenetic tree was constructed (Fig. 1A). Structural analysis revealed the presence of the Misat_Tub_SegII and Tubulin_3 domains. Furthermore, subcellular localization studies confirmed that FgDML1 localizes to mitochondria, as demonstrated by colocalization with a mitochondria-specific dye (Fig. 1B).

Identification and localization of FgDML1 in Fusarium graminearum.
(A) The phylogenetic tree was constructed based on the amino acid sequences of DML1 homologs from 10 species using the maximum likelihood method in Mega X. Bootstrap values from 1000 replications were displayed on the branches. (B) FgDML1 was localized to the mitochondria.
To investigate the function of FgDML1, ΔFgDML1 deletion mutant was constructed and validated via PCR and Southern blot analysis (Fig. S2), confirming the mutant as a single-copy knockout. To ensure that the observed phenotypes were specifically attributable to the deletion of FgDML1, an in situ complemented mutant, ΔFgDML1-C, was generated to restore FgDML1.
FgDML1 is essential for virulence
To investigate the role of FgDML1 in virulence, pathogenicity assays were performed on wheat coleoptiles and wheat leaves. The results revealed that ΔFgDML1 caused only restricted infection at the inoculation site on wheat coleoptiles and failed to induce systemic infection, in contrast to PH-1 and ΔFgDML1-C, which exhibited extensive colonization (Fig. 2A, B). Similarly, ΔFgDML1 displayed a near-complete loss of virulence on wheat leaves (Fig. 2C, D). These findings demonstrate that FgDML1 is a critical positive regulator of virulence in F. graminearum.

FgDML1 is required for both the virulence of F. graminearum.
(A) Lesion lengths on wheat coleoptiles caused by different strains. These images were taken at 14 dpi. (B) Dot plot showing the lesion lengths on wheat coleoptiles at 14 dpi tested with different strains. (C) Disease symptoms on wheat leaves inoculated with PH-1, ΔFgDML, and ΔFgDML-C. Images were taken at 5 dpi. (D) Disease area on wheat leaves inoculated with different strains at 5 dpi.
FgDML1 is indispensable for DON toxin synthesis
To evaluate whether the deletion of FgDML1 influences DON production, DON levels were measured under toxin-inducing conditions. The results revealed that DON production in ΔFgDML1 was reduced by nearly 80% compared to PH-1 and significantly lower than that of both PH-1 and ΔFgDML1-C (Fig. 3A). To further elucidate the regulatory relationship between FgDML1 and DON biosynthesis, the transcriptional levels of FgTri5 and FgTri6 were analyzed and found to be significantly downregulated in ΔFgDML1 (Fig. 3B). Moreover, examination of toxisomes in the mutant demonstrated that their formation was severely impaired, with almost no detectable toxisomes in ΔFgDML1 (Fig. 3C). Western blot analysis of the DON toxin marker protein FgTri1 further conirmed its markedly reduced levels in ΔFgDML1 compared to PH-1 (Fig. 3D). These findings suggest that FgDML1 is essential for regulating DON production in F. graminearum.

FgDML1 is required for the biosynthesis of DON toxin in F. graminearum.
(A) ΔFgDML1 exhibited decreased DON content. All strains were incubated in trichothecene biosynthesis induction (TBI) medium for 7 days. (B) Relative mRNA expression levels of FgTRI5, and FgTRI6 in the tested strains. Mycelia were harvested after 2 days of cultivation in TBI medium, and mRNA were extracted for quantification using the 2-ΔΔCT method. FgGapdh was used as the reference gene. (C) FgDML1 impaired the formation of DON toxisomes, as visualized by Tri1-GFP labeling of toxisomes. Strains were cultured in TBI for 36 hours. Bar = 10 μm (D) ΔFgDML1 exhibited reduced expression levels of Tri1-GFP. Strains were cultured in TBI for 36 hours, and mycelia were harvested for western blot analysis. Bars with the same letter indicate no significant difference according to a significant difference (LSD) test at P = 0.05.
The deletion of FgDML1 results in reduced synthesis of both ATP and acetyl-CoA
The results showed that ATP levels in ΔFgDML1 were significantly lower compared to PH-1 and ΔFgDML1-C (Fig. 4D). Previous studies have established a positive correlation between ATP levels and acetyl-CoA. Consistent with this, acetyl-CoA levels in ΔFgDML1 were also significantly reduced compared to the controls (Fig. 4C). In conclusion, the deletion of FgDML1 leads to a reduction in both the key energy molecule ATP and the DON precursor acetyl-CoA.

FgDML1 modulates mitochondrial morphology via interaction with FgDnm1 and negatively regulates Acetyl-CoA and ATP synthesis.
(A) Effects of FgDML1 on mitochondrial morphology. Mycelial plugs of the wild-type strain PH-1, the ΔFgDML1 deletion mutant, and the complemented mutant ΔFgDML1-C were cultured in YEPD medium for 36 hours. Mitochondria were stained using a mitochondria-specific fluorescent dye and observed under a confocal microscope. Additionally, conidial germlings were cultured in MBL medium and subjected to the same staining and imaging procedures. Scale bar = 5 μm. (B) Ultrastructural analysis of mitochondria by transmission electron microscopy (TEM). Mitochondrial ultrastructure was further examined in PH-1, ΔFgDML1, and ΔFgDML1-C using TEM. Mitochondria are indicated by red arrows. Scale bar = 200 nm. (C) FgDML1 Deletion Reduces Acetyl-CoA Levels. Mycelial cultures of PH-1, ΔFgDML1, and ΔFgDML1-C were incubated in YEPD medium for 36 hours. Acetyl-CoA levels were quantified using a commercial assay kit, following the instructions provided by the commercial assay kit. (D) FgDML1 deletion reduces ATP levels. The ATP content of PH-1, ΔFgDML1, and ΔFgDML1-C was measured following the same culture conditions as in (C), using a commercial ATP assay kit. (E) Co-immunoprecipitation (Co-IP) confirms interaction between FgDML1 and FgDnm1. Total protein extracts from strains expressing tagged versions of FgDML1 and FgDnm1 were separated by SDS-PAGE and subjected to immunoblot analysis. Co-IP was performed using ChromoTek GFP-Trap® magnetic agarose to pull down interacting proteins. Immunodetection was carried out using polyclonal anti-Flag and monoclonal anti-GFP antibodies. Monoclonal anti-GAPDH antibody was used as a reference for protein samples.
FgDML1 regulates mitochondrial morphology by interacting with FgDnm1
To assess whether the loss of FgDML1 induces mitochondrial alterations, mitochondria-specific dyes were utilized, revealing fragmented mitochondria in the ΔFgDML1 mutant, whereas PH-1 and ΔFgDML1-C displayed a typical network-like mitochondrial distribution (Fig. 4A). Further analysis via TEM identified damaged mitochondrial structures in the ΔFgDML1 mutant, in contrast to the well-preserved mitochondrial morphology observed in the control strains (Fig. 4B). Given that FgDnm1 is known to be a critical protein for mitochondrial fission, the interaction between FgDML1 and FgDnm1 was verified through co-immunoprecipitation (CoIP) assays (Fig. 4E). These findings indicate that FgDML1 plays a pivotal role in maintaining mitochondrial morphology by interacting with FgDnm1.
The deletion of FgDML1 reduces Complex III activity, induces compensatory upregulation of FgQCR2, FgQCR8, FgQCR9
Deletion of FgDML1 reduced F. graminearum sensitivity to the Qi-site fungicide cyazofamid, while having no effect on sensitivity to the Qo-site inhibitors pyraclostrobin and trifloxystrobin, nor to other respiratory inhibitors such as pydiflumetofen, fluxapyroxad, and fluopyram (Fig. 5A, B) (Fig. S3). Measurement of Complex III activity in ΔFgDML1 showed a 38.28% reduction in enzyme activity compared to PH-1 (Fig. 5C). To further investigate the reduced sensitivity to cyazofamid, transcription levels of the three subunits (FgCytb, FgCytC1, FgISP) and five assembly factors (FgQCR2, FgQCR6, FgQCR7, FgQCR8, FgQCR9) of Complex III were analyzed. The results revealed that, upon Cyazofamid treatment, the expression of FgQCR2, FgQCR7, and FgQCR8 was significantly upregulated in Δ FgDML1 (Fig. 5D).

FgDML1 modulates the sensitivity of F. graminearum to cyazofamid.
(A) ΔFgDML1 exhibits reduced sensitivity to cyazofamid. PH-1, ΔFgDML1, and ΔFgDML1-C were cultured on AEA medium modified with cyazofamid, with 50 μg/mL SHAM included to inhibit the alternative oxidase pathway. (B) Deletion of FgDML1 did not affect F. graminearum sensitivity to pyraclostrobin. The tested strains were incubated on AEA medium containing pyraclostrobin and 50 μg/mL SHAM to assess their response to the fungicide. (C) FgDML1 deletion reduces complex III enzymatic activity. Mycelial cultures of PH-1, ΔFgDML1, and ΔFgDML1-C were grown in YEPD for 36 hours, then treated with 30 μg/mL cyazofamid, 1.5 μg/mL pyraclostrobin, and 50 μg/mL SHAM for an additional 12 hours. The enzymatic activity of complex III was quantified using a commercial assay kit. (D) mRNA expression levels of complex III subunits and assembly factors in PH-1, ΔFgDML1, and ΔFgDML1-C. PH-1, ΔFgDML1, and ΔFgDML1-C were incubated in liquid AEA medium for 36 hours, followed by treatment with 30 μg/mL cyazofamid and 50 μg/mL SHAM. The relative mRNA expression levels of complex III subunits and assembly factors were quantified using the 2-ΔΔCT method. “T” denotes cyazofamid treatment.
Overexpression of FgQCR2, FgQCR8, and FgQCR9 alters the conformation of the QI site, resulting in reduced sensitivity to cyazofamid
Since Complex III is involved in the action of both cyazofamid (targeting the QI site) and pyraclostrobin (targeting the QO site) fungicides, the sensitivity of ΔFgDML1 to trifloxystrobin was investigated. The results showed that the deletion of FgDML1 did not alter sensitivity to a pyraclostrobin (Fig. 5B). ΔFgDML1 was subsequently treated with pyraclostrobin or cyazofamid, and Complex III enzyme activity was measured. After pyraclostrobin treatment, no significant change in enzyme activity was observed in ΔFgDML1 compared to PH-1 and ΔFgDML1-C (Fig. 5C). However, when treated with cyazofamid, a significant increase in Complex III enzyme activity was observed in ΔFgDML1, while the control groups maintained relatively low enzyme activity (Fig. 5C). These findings, combined with the upregulation of assembly factors, suggest that the elevated expression of assembly factors alters the protein conformation at the QI site, modulating sensitivity to cyazofamid.
FgDML1 regulates vegetative growth
To assess the role of FgDML1 in vegetative growth, PH-1, ΔFgDML1, and ΔFgDML1-C were cultured on various media, including PDA, CM, MM, and V8, to measure growth rates. The ΔFgDML1 mutant exhibited significantly reduced growth rates on all tested media compared to PH-1 and the complemented mutant ΔFgDML1-C (Fig. 6A). Moreover, ΔFgDML1 displayed pronounced hyphal curvature, which was not observed in PH-1 or ΔFgDML1-C (Fig. 6B). These findings indicate that FgDML1 is essential for normal vegetative growth in F. graminearum.

Effects of ΔFgDML1 on asexual and sexual development.
(A) Mycelial growth rate. PH-1, ΔFgDML1, ΔFgDML1-C were cultured for 3 days on PDA, CM, MM, and V8 solid media at 25°C. (B) Mycelial morphology. The mycelial morphology of PH-1, ΔFgDML1, and ΔFgDML1-C was examined on WA plates. Scale bar = 72 μm. (C) Conidial length. Conidia of ΔFgDML1 were significantly longer in length compared to PH-1 and ΔFgDML1-C. Conidia were germinated in MBL medium, stained with Calcofluor White (CFW), and observed using an Olympus IX-71 microscope. (D) Sexual reproduction. PH-1 and ΔFgDML1-C produced perithecia and asci containing ascospores after 7 or 14 days of incubation on CA medium, while the ΔFgDML1 failed to produce these structures under the same conditions. Perithecia and ascospores were observed using a Nikon SMZ25 fluorescent stereo microscope and an Olympus IX-71 inverted fluorescence microscope. Top image: perithecium, scale bar = 1 mm; bottom image: ascospores, scale bar = 50 μm. (E) Proportion of conidial septa. The proportion of conidial septa was assessed in the tested strains. (F) Conidial production. Conidia were harvested after 4 days of incubation in MBL medium, and their concentration was quantified using a hemocytometer. (G) Germination rate. Conidial germination was observed by incubating 300 conidia for 2 or 8 hours on WA plates. Germination rates were compared, with different letters indicating significant differences based on ANOVA followed by the LSD test (P = 0.05).
FgDML1 plays a critical role in both asexual and sexual reproduction
To examine the role of FgDML1 in asexual reproduction, a series of experiments were conducted on conidia. Morphological analysis revealed that conidia from the ΔFgDML1 mutant were thinner and longer than those from the PH-1 and ΔFgDML1-C (Fig. 6C). Furthermore, statistical analysis of septum number indicated a significant increase in conidia with ≥7 septa in the ΔFgDML1 compared to the controls (Fig. 6E). Conidial production was significantly reduced in ΔFgDML1, with fewer spores produced compared to PH-1 and ΔFgDML1-C (Fig. 6F). The germination rate of ΔFgDML1 conidia was also significantly lower than that of the controls (Fig. 6G). Regarding sexual reproduction, ΔFgDML1 failed to produce perithecia or ascospores on both the 7th and 14th days of incubation (Fig. 6D).
FgDML1 regulates sensitivity to various stresses
F. graminearum encounters various stresses during infection plant, which significantly influence its ability to infect. To investigate its response to different stress conditions, the sensitivity of ΔFgDML1 to various environmental factors was assessed, including osmotic stress (NaCl, KCl, sorbitol), cell wall stress (Congo red), membrane stress (SDS), as well as high temperature (30°C) and low temperature (15°C) stresses. The results revealed that ΔFgDML1 displayed significantly reduced sensitivity to osmotic stress compared to PH-1 and ΔFgDML1-C (Fig. 7A, B). No significant difference was observed in sensitivity to membrane stress, while a notable change in sensitivity to cell wall stress was observed (Fig. 7C, D). Additionally, differences in response to both high and low temperature stress were noted in ΔFgDML1 when compared to the control strains PH-1 and ΔFgDML1-C (Fig. 7E, F).

Response of the strains to different stresses.
(A) Reduced sensitivity to osmotic stress in ΔFgDML1. PH-1, ΔFgDML1 and ΔFgDML1-C were subjected to osmotic stress using NaCl, KCl, and Sorbitol to evaluate their sensitivity. (B) Statistical analysis of growth inhibition under osmotic stress. Growth inhibition rates of all strains under NaCl, KCl, and Sorbitol stress were statistically analyzed. (C) Sensitivity to cell wall and membrane damaging agents. The tested strains were exposed to cell wall-damaging agent Congo Red (CR) and cell membrane-damaging agent Sodium dodecyl sulfate (SDS) to assess their sensitivity. (D) Statistical analysis of growth inhibition under CR and SDS stress. Growth inhibition rates of all strains under CR and SDS stress were statistically analyzed. (E) Sensitivity to temperature stresses. The sensitivity of the tested strains to different temperature stresses was evaluated. (F) Statistical analysis of growth inhibition under temperature stress. Growth inhibition rates of all strains under various temperature stresses were statistically analyzed. Significant differences were determined using the LSD test at P = 0.05. Bars with the same letter indicate no significant difference.
Discussion
Misato Protein was originally identified in Drosophila melanogaster, where it was reported to play essential roles in mitochondrial DNA inheritance, cell division, and energy metabolism (Miklos et al., 1997). However, its functional characterization in filamentous fungi remains largely unexplored. In this study, we identified and analyzed the homolog FgDML1 in the phytopathogenic fungus F. graminearum. The FgDML1 protein contains conserved Misato_Tub_SegII and Tubulin_3 domains, with high homology observed among species within the Fusarium genus but significant genetic divergence from other taxa (Fig. 1A). In S. cerevisiae, DML1 is a critical regulator of mitochondrial fission and fusion dynamics, maintaining intracellular energy homeostasis by modulating mitochondrial morphology and distribution (Gurvitz et al., 2002). Our study demonstrated that FgDML1 localized to mitochondria in F. graminearum (Fig. 1B). Deletion mutants of FgDML1 exhibited phenotypes indicative of mitochondrial dysfunction, including fragmented mitochondrial morphology (Fig. 4A). TEM further confirmed structural and dynamic damage to mitochondria in the ΔFgDML1 (Fig. 4B). Structural analysis suggests that DML1 shares similarities with GTPase family proteins, indicating potential GTPase activity (Gurvitz et al., 2002). GTPases primarily hydrolyze GTP, but their activity is intricately linked to ATP production and utilization. These enzymes regulate critical cellular processes such as energy metabolism, signal transduction, protein synthesis, and cytoskeletal remodeling, all of which influence ATP levels (Mrnjavac and Martin, 2025; Pb et al., 2023; Rogne et al., 2018). In agreement with this, we observed a significant reduction in ATP content in the FgDML1 deletion mutant, underscoring its role in mitochondrial energy metabolism (Fig. 4D). In Homo sapiens, DML1 also localizes to mitochondria, where its silencing results in fragmented and aggregated mitochondria with reduced network continuity and fusion activity (Kimura and Okano, 2007b). Our findings indicate that FgDML1 plays a conserved role in maintaining mitochondrial integrity and energy homeostasis. Notably, FgDML1 was found to interact with FgDnm1 (Fig. 4E), FgDnm1 is a key dynamin-related protein mediating mitochondrial fission (Griffin et al., 2005; Kang et al., 2023), suggesting that FgDML1 may form a complex with FgDnm1 to regulate mitochondrial fission and fusion processes. To our knowledge, this is the first report documenting an interaction between DML1 and Dnm in any fungal species, including model organisms such as S. cerevisiae. This novel finding provides new insights into the molecular mechanisms underlying mitochondrial dynamics in filamentous fungi.
The silencing of ATP synthase subunit α (AtpA) has been shown to reduce ATP synthesis and inhibit the biosynthesis of TcdA and TcdB toxins (Marreddy et al., 2024). In plants, the production of secondary metabolites often demands substantial energy, with ATP serving as the primary energy carrier within cells. When ATP levels are depleted, plants may prioritize growth and development by reducing the synthesis of certain secondary metabolites, including toxins (Xiao et al., 2024). Similarly, in F. graminearum, deoxynivalenol (DON) toxin, a highly harmful mycotoxin and secondary metabolite, requires sufficient energy for its biosynthesis. In our study, the ATP content in the FgDML1 deletion mutant was significantly lower, and DON production was markedly reduced, compared to the wild-type PH-1 and the complementary mutant ΔFgDML1-C (Figure 3A). Reduced ATP levels disrupt the formation of toxisomes, which are critical for DON toxin biosynthesis (Tang et al., 2018), and the ΔFgDML1 strain is unable to form functional toxisomes (Fig. 3C). Western blot analysis also confirmed a significant reduction in the protein expression of FgTri1 (Fig. 3D). DON production is predominantly regulated by Tri genes, with Tri5 and Tri6 serving as critical components in the biosynthetic pathway (Kimura et al., 2001). Tri5 encodes trichodiene synthase, the key enzyme catalyzing the first step of DON biosynthesis (Huang et al., 2024; Jiang et al., 2016). In our study, the expression levels of FgTri5 and FgTri6 were significantly downregulated in the FgDML1 deletion mutant (Fig. 3B). To our knowledge, no research has yet elucidated a regulatory role for DML in gene expression in either S. cerevisiae or Drosophila melanogaster. However, given its established functions in cell division and microtubule organization, FgDML1 might indirectly influence gene expression by modulating chromatin structure or cell cycle progression (Schulze and Wallrath, 2007). Investigating this hypothesis will be a key focus of our future research. Given this substantial reduction in DON production, we investigated whether the precursor for DON biosynthesis, acetyl-CoA, was also affected. Results revealed a significant decrease in acetyl-CoA levels in the ΔFgDML1 mutant (Fig. 4C). In conclusion, reduced ATP levels impair toxin body formation, leading to lower toxin production. Additionally, decreased acetyl-CoA disrupts the availability of essential precursors for DON toxin synthesis, further decreasing its production. The combined effects of these factors result in a significant reduction in DON toxin biosynthesis.
F. graminearum is a highly destructive pathogen that poses a significant threat to wheat production worldwide. Cyazofamid is an effective fungicide commonly used to control plant pathogenic fungi. Cyazofamid specifically targets the Qi site of complex III in the mitochondrial respiratory chain (Bolgunas et al., 2006; Mitani et al., 2001). Complex III, also known as the cytochrome bc1 complex, plays a critical role in the electron transport chain by transferring electrons from ubiquinone to cytochrome c and pumping protons from the mitochondrial matrix into the intermembrane space (Fernández-Ortuño et al., 2008; Sarewicz et al., 2013). This complex consists of several core subunits, including cytochrome b, cytochrome c1, and iron-sulfur proteins, as well as multiple assembly factors. It contains two quinone binding sites: the Qo site (quinone oxidation site) and the Qi site (quinone reduction site) (Vercellino and Sazanov, 2022; Zara et al., 2009). In our study, we observed that the deletion of FgDML1 significantly reduced the sensitivity of F. graminearum to cyazofamid (Fig. 5A), while its sensitivity to pyraclostrobin remained unaffected (Fig. 5B). In the ΔFgDML1 mutant, we detected a decrease in complex III enzyme activity (Fig. 5C) and noted the upregulation of assembly factors FgQCR2, FgQCR7, and FgQCR8 following cyazofamid treatment (Fig. 5D). Further enzyme activity assays revealed that after pyraclostrobin treatment, ΔFgDML1 exhibited a 73.06% reduction in complex III activity, compared to an 80.38% decrease in the wild-type strain PH-1 (Fig. 5C). Interestingly, after cyazofamid treatment, the decrease in enzyme activity in ΔFgDML1 was only 36.31%, while PH-1 showed a dramatic 83.46% reduction in complex III activity. FgQCR2, FgQCR7, and FgQCR8 are critical assembly factors that play essential roles in the proper assembly of complex III (Zhan et al., 2024). These factors stabilize the core subunit structure, promoting correct folding and functional operation of complex III, particularly during the assembly of the Qi site. This ensures the proper formation and function of the Qi site, thus supporting the normal operation of the mitochondrial respiratory chain(Y. Wang et al., 2024; Zara et al., 2007). Given the role of FgDML1 in mitochondrial homeostasis, we further evaluated the sensitivity of the ΔFgDML1 mutant to other commonly used respiratory chain inhibitors, including pydiflumetofen, fluxapyroxad, fluopyram, and trifloxystrobin. The results indicated that FgDML1 deletion had no impact on the sensitivity of F. graminearum to these fungicides (Fig. S3). In conclusion, our findings suggest that the overexpression of assembly factors FgQCR2, FgQCR7, and FgQCR8 in ΔFgDML1 alters the conformation of the Qi site, which specifically modulates the sensitivity of F. graminearum to cyazofamid.
In H. sapiens, mutations or deletions in DML1 are associated with mitochondrial diseases characterized by early-onset myopathy and cerebellar ataxia (Chen et al., 2022; Nasca et al., 2017). In our study, the deletion of FgDML1 in F. graminearum resulted in significant defects in vegetative growth, including a markedly reduced growth rate (Fig. 6A) and an aberrant, excessively curved hyphal morphology (Fig. 6B). Notably, the loss of FgDML1 rendered F. graminearum incapable of completing sexual reproduction (Fig. 6D), thereby potentially reducing its primary inoculum sources. Additionally, the deletion of FgDML1 impaired asexual reproduction and pathogenicity (Fig. 2) (Fig. 6), critical factors for fungal survival and host infection. Furthermore, the ΔFgDML1 mutant exhibited altered responses to various stress conditions (Fig. 7), suggesting a broader role for FgDML1 in regulating fungal stress tolerance.
In the present study, FgDML1 is localized to the mitochondria and interacted with FgDnm1, a key regulator of mitochondrial morphology, positively regulates ATP and acetyl-CoA levels, influences toxin body formation, and ultimately leads to a significant reduction in DON toxin biosynthesis. Furthermore, deletion of FgDML1 impairs the enzymatic activity of Complex III, which subsequently induces the upregulation of the assembly factors FgQCR2, FgQCR8, and FgQCR9, resulting in conformational changes at the Qi site of Complex III and decreased sensitivity to cyazofamid. In addition, the absence of FgDML1 has profound effects on pathogenicity, fungal development, and mitochondrial morphology. Based on these findings, we propose a working model delineating the role of FgDML1 in regulating DON toxin biosynthesis and cyazofamid sensitivity in F. graminearum (Fig. 8). This study not only provides a theoretical basis for understanding the regulatory mechanisms underlying toxin biosynthesis in F. graminearum but also identifies potential molecular targets for the development of novel agents to control FHB.

Model of FgDML1 regulation of F. graminearum sensitivity to DON toxin synthesis and cyazofamid fungicide.
FgDML1 interacts with FgDnm1 to modulate mitochondrial morphology, thereby positively regulating acetyl-CoA and ATP levels, which influence toxisome formation and ultimately affect DON production. Loss of FgDML1 reduces complex III enzymatic activity, leading to the upregulation of the assembly factors FgQCR2, FgQCR8, and FgQCR9. This alteration in assembly factor expression changes the conformation of the Qi site, leading to reduced sensitivity to cyazofamid.
Material and methods
Strains, culture conditions, and fungicides
The wild-type F. graminearum strain PH-1 was used as the parental strain for protoplast transformation experiments. All strains were preserved at −80°C. The tested strains were cultured in the dark on potato dextrose agar (PDA) at 25°C. To evaluate vegetative growth, CM, MM, and V8 media were prepared as described previously (Tang et al., 2020). MBL medium was used for conidial production, while carrot agar (CA) medium was utilized to assess sexual reproduction (Wang et al., 2011). DON toxin production was measured using TBI medium(M. Wang et al., 2024).
Cyazofamid (98%, BASF China Ltd.), pyraclostrobin (98%, BASF China Ltd.) pydiflumetofen (98%, China Syngenta crop Protection Co., Ltd.), trifloxystrobin (96%, Bayer Crop Science China Co., Ltd.), fluxapyroxad (98%, BASF China Ltd.) and fluopyram (96%, Bayer Crop Science China Co., Ltd.) were dissolved in dimethyl sulfoxide (DMSO) at stock concentrations of 50,000 μg/mL and 10,000 μg/mL, respectively.
Generation of deletion mutants and complemented mutants
The split-marker method was employed to generate the ΔFgDML1 mutant (Yu et al., 2004). Specifically, approximately 1.2 kb of the upstream and downstream flanking regions of FgDML1 were amplified and fused with a dual-selection marker containing the hygromycin phosphotransferase (HPH) gene and the herpes simplex virus thymidine kinase (HSV-tk) gene fragments. The resulting fusion fragment was transformed into the wild-type F. graminearum PH-1 strain via polyethylene glycol (PEG)-mediated protoplast transformation. Transformants were selected on PDA plates containing either Hygromycin B (Yeasen, Shanghai, China) or F2du (Solarbio, Beijing, China). Positive transformants were initially screened by PCR and subsequently verified through Southern blot analysis. To generate the complemented mutant ΔFgDML1-C, the full-length coding sequence (CDS) of FgDML1 was introduced into the ΔFgDML1 mutant, replacing the dual-selection cassette. Additionally, the FgDML1-GFP mutant and FgDnm1-3×Flag mutant were constructed using previously established methods to enable further functional studies(C. Wang et al., 2024).
Vegetative growth and conidiation assays
Fresh mycelial plugs of the tested strains were transferred to PDA, CM, MM, or V8 plates to evaluate mycelial growth rates. Conidial production was induced by incubating the strains in MBL medium, and the number of conidia was determined using a hemocytometer. The septa of conidia were visualized through calcofluor white (CFW) staining. For germination rate assessment, conidia were collected and inoculated onto water agar (WA) plates, followed by incubation at 25°C for 2 and 8 hours. Germination rates were then recorded at the respective time points.
Sexual reproduction assay
Sexual reproduction experiments were performed on CA medium. Test strains were incubated on CA medium in complete darkness for 6 days. After incubation, the surface mycelia were removed using a mycelial scraper and 2.5% Tween 60 solution. The plates were then further incubated at 25°C under a 12-hour light/12-hour dark cycle to induce sexual development. Perithecia and ascospores were observed and recorded on days 7 and 14 using a Nikon SMZ25 fluorescent stereomicroscope and an Olympus IX-71 inverted fluorescent microscope.
Determination of DON production and pathogenicity
As previously described, pathogenicity tests were conducted on wheat coleoptiles and wheat leaves. DON toxin was measured using a commercial ELISA-based kit. Fresh mycelial plugs of the test strains were placed in TBI medium under toxin-producing conditions (28°C, 145 ×g, 7 days incubation), and DON toxin was quantified according to the commercial kit instructions after harvesting mycelia and toxin-containing filtrates.
Determination of acetyl-CoA content and ATP concentration
ATP content and acetyl-CoA levels were determined using the methods described previously (Hu et al., 2023; Song et al., 2024). The test strains were cultured in YEPD medium at 25°C and 145 × g for 36 hours. Mycelia were collected by filtration through three layers of lens-cleaning paper, and excess moisture was removed with filter paper. Subsequently, ATP and acetyl-CoA levels were quantified using ATP and acetyl-CoA assay kits (Solarbio, Beijing, China), respectively.
Sensitivity determination
To investigate the sensitivity of ΔFgDML1 to QoI and QiI fungicides, the wild-type strain PH-1, the ΔFgDML1 mutant, and the complemented mutant ΔFgDML1-C were inoculated on AEA plates supplemented with gradient concentrations of cyazofamid and pyraclostrobin. To inhibit the alternative respiratory pathway, 50 μg/mL SHAM was applied. The percentage inhibition (%) of mycelial growth was calculated using the formula: (mean control diameter - mean diameter at fungicide concentration) / (mean control diameter - 5 mm mycelial plug) × 100. To evaluate the sensitivity of ΔFgDML1 to various stress conditions, the test strains were cultured on PDA plates supplemented with stress-inducing agents, including NaCl, KCl, sorbitol, Congo red, and SDS. Plates were incubated at 25°C for 3 days, and colony growth was assessed.
Measurement of complex III enzyme activity
The enzyme activity of Complex III was determined in the PH-1, ΔFgDML1, and ΔFgDML1-C. Fresh mycelial plugs from each strain were inoculated into liquid AEA medium and incubated at 25°C with shaking at 145 × g for 36 hours. Subsequently, cyazofamid and pyraclostrobin were added to final concentrations of 30 μg/mL and 1.5 μg/mL, respectively, along with 50 μg/mL SHAM. After an additional 12-hour incubation, the mycelia were harvested, and Complex III activity was measured according to the complex III enzyme activity kit (Solarbio, Beijing, China) instructions.
Microscopic observation
To determine the subcellular localization of FgDML1, the FgDML1-GFP mutant was incubated in YEPD medium at 25°C with shaking at 145 × g for 36 hours. Subcellular localization was analyzed using a Leica TCS SP8 confocal microscope, with MitoTracker Red CMXRos (Yeasen, Shanghai, China) applied to confirm mitochondrial targeting through colocalization of fluorescence signals. To investigate toxisome morphology, the ΔFgDML1::Tri1+GFP mutant was cultured in TBI medium at 28°C with shaking for 36 hours, and the structural dynamics of toxisomes within the mycelium were visualized using Tri1-GFP fluorescence under confocal microscopy. Additionally, mitochondrial morphology was evaluated by culturing PH-1, ΔFgDML1, and ΔFgDML1-C in YEPD medium under identical conditions, followed by staining with MitoTracker Red CMXRos and confocal microscopy analysis to assess mitochondrial structural alterations, distribution, and dynamics. For ultrastructural observations, mycelial samples were fixed and dehydrated according to standard protocols, embedded, sectioned, and stained with uranyl acetate and lead citrate. Mitochondrial ultrastructure was examined using a Tecnai G2 Spirit Bio electron microscope (Thermo, MA, USA) at an accelerating voltage of 80 kV to compare the structural integrity and morphological differences among the strains.
RNA extraction and RT-qPCR assays
The test strains were transferred to liquid AEA medium and incubated at 25°C for 48 hours, with cyazofamid added to a final concentration of 20 µg/mL. The control group was not treated with any fungicide. To measure the transcriptional levels of genes involved in DON biosynthesis, the test strains were transferred to TBI medium and incubated for 3 days. Mycelium was collected and total RNA was extracted following the instructions provided by the kit (Tiangen, Beijing, China). cDNA synthesis was performed using Evo M-MLV Mix Kit (Accurate, Hunan, China). reverse transcription. Quantitative real-time PCR (qRT-PCR) was carried out using the QuantStudio 6 Flex real-time PCR system (Thermo, Fisher Scientific, USA) to assess the relative expression of three subunits of Complex III (FgCytb, FgCytc1, FgISP), five assembly factors (FgQCR2, FgQCR6, FgQCR7, FgQCR8, FgQCR9), and DON biosynthesis-related genes (FgTri5 and FgTri6). The FgCox1 gene was used as the reference gene for FgCytb, while FgGapdh was used as the reference for the other genes. Relative transcript levels were calculated using the 2-ΔΔCT method.
Western Blot assay and Co-IP assay
Total protein extraction was performed according to previously established protocols, and the extracted proteins were separated using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). Subsequently, proteins were transferred onto an Immobilon-P transfer membrane (Millipore, Billerica, USA). The membrane was probed with GFP antibody D191040 (BBI, Shanghai, China) and Flag antibody 30501ES60 (Yeasen, Shanghai, China). The FgDnm1-3×Flag construct was introduced into PH-1 and FgDML1-GFP, respectively. All tagged mutant strains were subjected to triple validation, including PCR, sequencing, and Western blot analysis. Total protein from tagged strains was incubated with ChromoTek GFP-Trap® Magnetic Agarose (ChromoTek, Planegg-Martinsried, Germany) beads. Proteins eluted from the beads were further co-incubated with GFP or Flag antibodies for detection. Gapdh antibody 60004-1-Ig (Proteintech, Rosemont, USA) was used as an internal control for protein normalization. Chemiluminescent detection was performed following incubation with the corresponding secondary antibody.
Statistical analysis
All data were analyzed using one-way analysis of variance (ANOVA), followed by the least significant difference (LSD) test with a significance threshold of P < 0.05. The EC50 values were calculated using DPS statistical analysis software. Each experiment was independently repeated three times.
Acknowledgements
This study was sponsored by National Natural Science Foundation of China (32272585).
Additional information
CRediT authorship contribution statement
Chenguang Wang: methodology, investigation, editing, and writing original draft. Xuewei Mao: formal analysis, data curation. Weiwei Cong, Lin Yang.: performing the partial work of the experiments and analyzing the data. Yiping Hou: conceptualization, resources, writing−reviewing, supervision, funding acquisition.
Additional files
Funding
National Natural Science Foundation of China (32272585)
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