Introduction

Most bacterial cells utilize the peptidoglycan (PG) cell wall as a major stress-bearing structure that determines cell shape and prevents cells from lethal rupture caused by high osmotic pressure [1, 2]. To grow in size, bacteria expand their existing PG structures using distinct patterns. In rod-shaped bacteria, two main modes of PG elongation are observed: polar elongation, where new cell wall material is added at one or both poles, and dispersed nonpolar elongation, which involves a more uniform insertion of PG along the lateral sides of the cell. These elongation strategies are typically species-specific, with each organism adopting either one mode or a combination of both [3, 4]. Although most well-studied rod-shaped bacteria exhibit dispersed elongation, polar elongation is notably characteristic of Gram-negative Rhizobiales and Gram-positive Actinomycetales [5-7].

PG of both Gram-positive and negative bacteria consists of glycan strands that are covalently crosslinked by short peptides [8, 9]. PG precursors are synthesized in the cytoplasm and flipped across the cytoplasmic membrane, where PG synthases, including glycosyltransferases (GTases) that polymerize them into glycan strands, which are then crosslinked into PG network by transpeptidases (TPases). In most rod-shaped bacteria, two synthase systems assemble the PG during cell elongation, the Rod system and class A penicillin-binding proteins (aPBPs) [2, 10, 11]. The Rod system is a multiprotein complex that includes RodA, a shape, elongation, division, and sporulation (SEDS) family GTase; PBP2, a TPase of the class B penicillin-binding protein (bPBP) family; and the actin homolog MreB. This system defines rod shape and drives the majority of PG expansion during vegetative growth [11-13]. In contrast, aPBPs that possess both GTase and TPase activities do not depend on MreB, and the absence of single aPBPs rarely abolishes cell survival or rod-like morphology [12, 14-17].

MreB is essential for rod shape in the cells that elongate in dispersed nonpolar manner [13]. MreB polymerizes into antiparallel double filaments on the inner leaflet of the cytoplasmic membrane [18, 19]. Sensitive to membrane curvature, MreB filaments guide RodA and PBP2 to the cylindrical regions of the cell envelope, where PG elongation occurs [13, 20-23]. Depleting MreB or inhibiting MreB polymerization using A22, a specific inhibitor, causes cells to lose rod shape in a wide range of model organisms, including Escherichia coli [24, 25], Caulobacter crescentus [26], Pseudomonas aeruginosa [27], Bacillus subtilis [28], Myxococcus xanthus [29], etc. Conversely, MreB is either absent or nonessential in the bacteria that elongate at the poles [30]. Instead, these organisms repurpose cell division related proteins, such as FtsA and FtsZ in Rhizobiales and DivIVA in Actinomycetales to localize PG synthases to cell poles [31, 32]. Recent studies revealed that closely related bacterial species in the family Caulobacteraceae can adopt different PG elongation modes [3] and that Streptomyces can use both polar and dispersed elongation modes in a special growth stage called exploratory growth [4]. Nonetheless, it remains uncertain whether the PG elongation mode in rod-shaped bacteria can be entirely reprogrammed without compromising cell morphology.

E. coli (γ-proteobacterium) and M. xanthus (long assigned to δ-proteobacteria but recently reclassified into the newly established phylum Myxococccota [33]) both elongate their PG in dispersed manner using their respective Rod systems [17, 20, 34-36]. In this study, we found that the heterogeneous expression of M. xanthus MreB (MreBMx) in wild-type E. coli caused the native MreB (MreBEc) to form aggregates at cell poles and thereby redirect the Rod synthases to elongate PG at poles. Building on this observation, we further demonstrated that directly targeting PBP2 to cell poles is sufficient to switch E. coli PG elongation to poles. In both cases, the reprogrammed polar PG elongation maintains rod shape independent of MreB filaments. Given that MreB is an ancient protein believed to have existed prior to the emergence of Rhizobiales and Actinomycetales [37], it is plausible that polar growth may have evolved from dispersed elongation as a consequence of MreB loss.

Results

Heterologous expression of MreBMx in E. coli causes MreBEc to aggregate at cell poles

While cloning the M. xanthus mreB (mreBMx) gene into the plasmid pMAT3 [38] using the E. coli DH5α strain, we found that E. coli cells harboring the pMAT3-mreBMx plasmid grew slower and displayed dark aggregates near their cell poles under bright field microscopy (Fig. 1a). To determine whether this phenomenon is specific to the DH5α strain, we transformed the pMAT3-mreBMx plasmid into wild-type E. coli strains MG1655 and BW25113 and observed similar aggregates at cell poles (Fig. 1a). In contrast, the empty pMAT3 vector did not cause polar aggregation (Fig. 1a, insets). To maintain consistency, we performed all subsequent experiments in MG1655-derived strains.

Heterologous expression of MreBMx in E. coli causes MreBEc to aggregate at cell poles.

a) Heterologous expression of MreBMx in E. coli strains DH5α, MG1655, and BW25113 causes E. coli cells to form dark aggregates at cell poles. Insets show the morphology of cells carrying the empty pMAT3 vector. b) CryoEM images of an E. coli MG1655 cell that expresses MreBMx. White arrow points to the polar aggregate. In the cells with polar aggregates, PG thickens at cell poles (inset i, red arrow), whereas PG is rarely visible in nonpolar regions (insert ii). c) MreBMx expresses at very low levels, even when induced by high concentration of CuSO4. The native expression of MreBMx from the same number of M. xanthus (Mx) cells is shown in the first lane as a reference. Black arrow points to the bands detected by an anti-MreBMx antibody. d) MreBEc-msfCFPSW forms dispersed foci in the NO59 strain. e) In BN04 (NO59 pMAT3-mreBMx-PAmCherrySW) cells, instead of forming filaments, MreBMx and MreBEc colocalize in polar aggregates. f) While BN04 strain retains rod shape, expressing MreBMx increases both the length and width of cells. BF, bright field.

Under a cryogenic electron microscope (cryoEM), these aggregates appeared as dense spheres that lack clear boundaries (Fig. 1b), similar to the inclusion bodies frequently observed in E. coli cells that express recombinant proteins [39]. Remarkably, in cells with polar aggregates, we observed dark densities from the PG layers at the cell poles (Fig. 1b i), whereas PG was rarely visible in nonpolar regions (Fig. 1b ii). The correlation between polar aggregates and thickened PG suggests that these aggregates may enhance local PG synthesis.

The pMAT3 plasmid, which carries the ColE1 origin, was designed for gene expression under the control of a copper-inducible promoter [38]. However, cells carrying the pMAT3-mreBMx plasmid formed aggregates even in the absence of added copper. We reasoned that the leaky expression from the promoter was unlikely to produce MreBMx at levels high enough to form inclusion bodies. To assess how MreBMx expression influences aggregate formation in E. coli, we performed immunoblotting. As shown in Fig. 1c, the highly sensitive anti-MreBMx antibody [40] did not detect significant MreBMx expression in the absence of copper, indicating that the leaky expression was extremely low and that the antibody did not cross-react with MreBEc (Fig. 1c). Even at CuSO4 concentrations as high as 200 µM, MreBMx expression was only modestly induced in E. coli, to less than 5% of its native expression level in M. xanthus (Fig. 1c). Collectively, these findings suggest that even minimal levels of MreBMx are sufficient to initiate aggregate formation. In this context, MreBMx acts not as a primary structural component of the aggregates, but rather as a trigger for their formation. Therefore, in all subsequent experiments, we expressed MreBMx from pMAT3 without the addition of copper. In this condition, among 799 cells we analyzed, 68.1% contained one aggregate, 3.4% contained two, while 28.5% did not show significant aggregates. We reason that this variability may stem from the heterogeneity of the leaky MreBMx expression among individual cells and the limited sensitivity of bright field microscopy.

Given that MreBMx and MreBEc share 63.3% amino acid sequence identity [41], we hypothesized that even low levels of MreBMx could interfere with MreBEc filament assembly, causing MreBEc to form inclusion body-like aggregates. In the MG1655-derived E. coli strain NO59 that expresses an internal monomer super-folder cyan fluorescence protein (msfCFPSW)-labeled MreBEc from its native locus and promoter [42], short MreBEc filaments appear as foci on cell peripherals (Fig. 1d). To test our hypothesis, we generated the strain BN04 by expressing an internal photoactivatable mCherry (PAmCherrySW)-labeled MreBMx that is functional in M. xanthus [29] in NO59 using the pMAT3 vector. In bright field images, BN04 cells showed polar aggregates (Fig. 1e) similar to those observed in the MG1655 cells expressing the unlabeled MreBMx (Fig. 1a). Thus, introducing fluorescent tags into both MreB homologs did not affect aggregate formation. When exposed to 405-nm excitation (0.2 kW/cm2) for 2 s, the majority of MreBMx-PAmCherrySW was photoactivated [29]. In the cells that contained aggregates, the emission signals of both MreBMx and MreBEc colocalized with the polar aggregates (Fig. 1e). Notably, MreBEc filaments were never observed (Fig. 1e), indicating that heterologous expression of MreBMx in E. coli causes the majority of MreBEc to aggregate at cell poles.

Polar aggregation of MreBEc causes E. coli to elongate PG at cell poles

Polar aggregation of MreBEc clearly affected PG elongation: expression of MreBMx-PAmCherrySW increased the generation time from 41.2 ± 3.0 min (n = 4) of NO59 to 127.6 ± 8.6 min (n = 3) of BN04 (Fig. S1) and led to a 33.11% and 5.70% increase in cell length and width, respectively (Fig. 1f). However, cells still retained rod shape.

To visualize newly synthesized PG, we used BODIPY-FL 3-amino-D-alanine (BADA), a fluorescently labeled D-alanine analog that incorporates into the PG scaffold during elongation [43, 44]. To visualize PG assembly on the entire cell surface, we used fluorescence microscopy to visualize a ∼200-nm thick longitudinal section close to the coverslip under highly inclined and laminated optical sheet (HILO) illumination [29, 35, 45, 46] (Fig. 2a). In the NO59 strain, the incorporation of BADA appeared in a dispersed pattern, aligning with the distribution of MreBEc filaments. Notably, the absence of BADA at the cell poles reinforces the nonpolar elongation mode (Fig. 2a, b). In contrast, in 71.81% (n = 674) of the BN04 cells, PG elongation occurred exclusively at cell poles, colocalizing with the aggregates that contained both MreBEc and MreBMx (Fig. 2d, e).

Heterologous expression of MreBMx causes E. coli to elongate PG at cell poles.

a) NO59 cells elongate PG at nonpolar regions in a dispersed manner, consistent with MreBEc localization pattern. PG elongation was labeled by BADA. White arrows point to cell poles. b) Quantitative analysis of PG elongation across 156 NO59 cells. Cell lengths were normalized to 1 and BADA fluorescence intensity profiles were standardized using Z-score normalization (0 indicates the mean value for each cell). Insets here and in panel e illustrate patterns of PG elongation, with newly synthesized PG shown in green. Imaged cell regions are highlighted by dotted-line boxes. c) PG elongation mode in NO59 cells visualized by pause-chase sequential labeling with BADA and TADA, where both dyes were incorporated in a dispersed, nonpolar pattern. d) BN04 cells that express MreBMx-PAmCherrySW elongate PG at poles, consistent with the localization patterns of both MreBEc and MreBMx. PG elongation was visualized by BADA. e) Quantitative analysis of PG elongation across 135 BN04 cells. For each cell, its BADA fluorescence intensity profile was measured starting from the only or brighter cell pole. f) Elongation mode in BN05 cells visualized by pause-chase sequential labeling with BADA and TADA. While the new growth (TADA) occurred at cell poles, the old growth (BADA) receded to nonpolar regions. BF, bright field. Scale bars, 5 μm.

To further validate this observation, we conducted a pulse-chase experiment to visualize PG elongation using sequential incorporation of two fluorescent D-alanine analogs. For the NO59 strain, we first stained PG elongation using BADA for 15 min, washed BADA out, then switched to the second dye, TAMRA 3-amino-D-alanine (TADA) for another 15 min. Consistent with its nonpolar elongation mode, both dyes were incorporated in the same dispersed pattern into lateral cell surfaces (Fig. 2c). To facilitate pause-chase labeling, we constructed a BN05 strain that expressed unlabeled MreBMx in the NO59 background and visualized PG elongation using BADA and TADA sequentially. While the second dye, TADA, was incorporated exclusively at the cell poles, the first dye, BADA, receded to subpolar regions (Fig. 2f), indicating that newer PG elongation occurs exclusively at poles. These results suggest that some MreBEc molecules in polar aggregates might be recruiting the Rod enzymes to poles and thus redirecting E. coli growth to a polar elongation mode.

The Rod system carries out the reprogrammed, polar PG elongation

To determine whether aPBPs or the Rod system drives polar elongation when MreBEc aggregates at cell poles, we inhibited their activities by moenomycin (10 µg/ml) and mecillinam (100 µg/ml), respectively. While moenomycin blocks all aPBPs [47], mecillinam specifically inhibits PBP2 in the Rod system [48]. Under both treatments, the NO59 cells lost their rod shape but continued to incorporate BADA without a recognizable pattern (Fig. 3a), suggesting that although both aPBPs and the Rod system are required for rod shape in E. coli, either system is sufficient for PG elongation, albeit in disorganized manners. Notably, MreBEc appeared diffusive under both conditions (Fig. 3a), indicating extensive disassembly of MreBEc filaments, for which the mechanisms remain to be investigated.

The relocalized Rod system carries out the reprogrammed, polar PG elongation.

a) In the absence of heterologous MreB, E. coli cells elongate PG using both the Rod system and aPBPs. Neither moenomycin (MOE, 10 μg/ml) that inhibits all aPBPs, mecillinam (MEC, 100 μg/ml) that inhibits PBP2 in the Rod system, or A22 (10 μg/ml) that inhibits the polymerization of MreB filaments and thus disrupts the assembly of Rod complexes, abolishes PG elongation completely. PG elongation was visualized using BADA. b) E. coli cells expressing MreBMx solely rely on the Rod system for polar PG elongation, as MEC alone is sufficient to abolish PG elongation. Such polar PG elongation is resistant to A22, suggesting that polar localized Rod enzymes elongate PG independent of MreB filaments. PG elongation was visualized using BADA. c) Heterologous expression of MreBMx recruits E. coli PBP2 to cell poles. d) In the absence of RodZ, MreBEc still forms aggregates at pole-like locations (white arrows) but fails to induce focused PG growth. PG elongation was visualized using BADA. e) The reprogrammed, polar PG elongation does not depend on the divisome as FtsZ does not colocalize with polar MreB aggregates.

Under moenomycin treatment, the BN04 cells that expressed MreBMx retained their rod shape and continued PG elongation at their poles, with both MreBEc and MreBMx remained at the poles (Fig. 3b). Thus, focused polar growth fully bypassed the requirement for aPBPs. In contrast, mecillinam inhibited PG growth and abolished rod shape in BN04 cells (Fig. 3b). As mecillinam is sufficient to block polar PG elongation, the Rod system is the sole player that drives polar PG elongation. Interestingly, the expression of MreBMx did not cause MreBEc to aggregate in the presence of mecillinam (Fig. 3b). As mecillinam blocks MreBEc filament assembly (Fig. 3a), our observation suggests that MreBMx may only cause assembled MreBEc filaments to aggregate.

To drive focused PG elongation at cell poles, the Rod system enzymes RodA (GTase) and PBP2 (TPase) must localize to the poles. The TKL130 strain, derived from MG1655, expresses a PAmCherry-labeled PBP2 from its native locus and promoter [49]. Under a 405-nm excitation (0.2 kW/cm2, 2 s) that activates the majority of PAmCherry, PBP2 localized in a dispersed pattern (Fig. 3c). To test if PBP2 switches its localization to cell poles while the Rod system drives polar PG elongation, we generated the BN06 strain by introducing the pMAT3-mreBMx plasmid into the TKL130 background. Similar to our observation on BN04 and BN05 cells, heterologous expression of MreBMx caused BN06 cells to form dark polar aggregates under bright-field microscopy, which colocalized with bright PBP2 foci (Fig. 3c).

To further test if MreBEc aggregates recruit the Rod polymerases to cell poles, we investigated whether they still trigger polar PG elongation in the absence of RodZ, the connector between MreBEc and Rod enzymes [42]. The NO56 cells that expressed MreBEc-msfGFPSW in a ΔrodZ background were near spherical (Fig. 3d). Consistent with the disconnection between MreBEc and Rod enzymes, while MreBEc still formed filaments, HCC-amino-D-alanine (HADA), another fluorescent D-amino acid, was incorporated near homogeneously on the entire cell surface (Fig. 3d). We introduced pMAT3-mreBMx into the NO56 background to generate the BN07 strain. Similar to the parental NO56 cells, BN07 cells were near spherical, with imperfect local curvatures that mimicked cell poles (Fig. 3d). Strikingly, while MreBMx expression caused MreBEc to aggregate at such pole-like locations, these aggregates neither induced focused HADA incorporation, nor restored rod shape (Fig. 3d). Therefore, in the absence of RodZ, MreBEc aggregates fail to induce focused PG elongation. Taken together, in the reprogrammed, polar-elongating cells (BN04, BN05, and BN06), MreBEc aggregates recruit the Rod polymerases to poles through RodZ.

Besides the Rod system and aPBPs, a third machinery, the divisome, specifically assembles PG at the division site. To further confirm that the divisome does not significantly contribute to polar PG elongation, we visualized the localization of FtsZ, the cytoskeletal element that orchestrates the PG synthases in the divisome, by expressing a GFP-labeled FtsZ as merodiploid [50] in the NO59 (mreBEc-cfpsw) and BN05 (mreBEc-cfpsw pMAT3-mreBMx) backgrounds. In both strains, FtsZ-GFP forms bright bands in the center of cells, marking the current or future division sites (Fig. 3e). Notably, in the BN05 background, FtsZ did not colocalize with the polar MreBEc aggregates. Thus, the divisome does not contribute to the polar PG elongation. On the other hand, the reprogrammed PG elongation does not change the mode of cell division. Taken together, the polar localized Rod system is both sufficient and necessary for focused PG elongation at poles.

Targeting PBP2 to cell poles is sufficient to drive polar PG elongation

To determine whether E. coli’s elongation mode could be reprogrammed by directly targeting Rod polymerases to cell poles, we modified the PopZ-Linked Apical Recruitment (POLAR) system [51] to express a PopZ-H3H4-PBP2 fusion in trans in the NO59 strain with an arabinose-inducible promoter using the pHCL149 plasmid [51]. In this fusion, PopZ from C. crescentus has been proven to localize to E. coli cell poles while the H3H4 homo-oligomerization domain promotes targeting PBP2 to polar PopZ clusters [52]. Prior to arabinose induction, 95.93% (n = 123) of cells exhibited dispersed PG elongation and MreBEc distribution (Fig. 4a). Upon induction, 92.06% (n = 126) of cells displayed polar PG elongation that colocalized with MreBEc aggregates (Fig. 4a). These results indicate that targeting a critical amount of PBP2 to cell poles is sufficient to shift E. coli growth to polar elongation. In addition, the fact that MreBEc forms polar aggregates following PBP2 indicates that PBP2 can regulate the localization of MreB.

Targeting PBP2 to cell poles is sufficient to drive polar PG elongation.

a) When PBP2 (encoded by mrdA) is ectopically expressed with a polar-targeting tag (PopZ-H3H4) by an arabinose-inducible promoter under 0.4% arabinose (Ara), MreBEc aggregates at cell poles and cells switch to polar PG elongation and this reprogrammed growth mode is resistant to A22 (10 μg/ml). The white arrow points to a cell that still elongated PG at nonpolar sites. b) Quantitative analysis of PG elongation. Cell lengths were normalized to 1 and BADA fluorescence intensity profiles were standardized using Z-score normalization (0 indicates the mean value for each cell). Insets illustrate patterns of PG elongation, with newly synthesized PG shown in green. The numbers of cells that adopt each elongation pattern were presented above the insets. Imaged cell regions are highlighted by dotted-line boxes. c) Expressing pole-targeting PBP2 in the absence of MreBEc neither induces focused PG elongation (labeled by BADA) nor restores rod-shape, despite that Rod enzymes still incorporate BADA. aPBPs were inhibited by moenomycin (MOE, 4 μg/ml) for 1 h before adding BADA for 15 min. Scale bars, 5 μm.

Polar PG elongation does not require MreB filaments

Because cells continue to elongate PG at their poles despite most MreBEc being sequestered in aggregates, polar PG elongation requires few, if any, MreBEc filaments. To clarify the roles of MreB filaments in polar elongation, we first treated cells with A22 that inhibits MreB polymerization [18, 53]. In the NO59 cells that expressed MreBEc-msfCFPSW, A22 (10 µg/ml) abolished rod shape and dispersed MreBEc foci within 1 h, albeit cells continued to incorporate BADA, likely through aPBPs (Fig. 3a). These results confirm numerous reports that MreB filaments are essential for rod shape when cells adopt nonpolar PG elongation [13, 25, 54].

In stark contrast, in the BN04 cells that expressed both MreBEc-msfCFPSW and MreBMx-PAmCherrySW, both MreB homologs remained in polar aggregates in the presence of A22 and cells continued polar growth while maintaining rod shape (Fig. 3b). Similarly, when PBP2 was artificially targeted to the poles in the BN10 cells, cells displayed similar resistance against A22, with both MreBEc and PG elongation focused on cell poles (Fig. 4a, b). Taken together, once cells switch their growth sites to cell poles, the Rod enzymes carry out PG elongation independent of MreB filaments.

Focused PG elongation depends on pre-established cell poles to preserve rod shape

To test whether the MreB protein is still required for focused PG elongation, we acquired the strain ATM1504 that carries an mreB deletion but expresses SdiA to suppress ΔmreB lethality [55]. The ATM1504 cells grew as spheres and incorporated BADA near homogeneously on their surfaces (Fig. 4c). We constructed the BN11 strain to express the PopZ-H3H4-PBP2 fusion in trans in the ATM1504 strain with an arabinose-inducible promoter. After 12 h of induction with 0.4% arabinose followed by 15 min of BADA staining, all cells remained spherical.

Two possibilities could account for these observations. First, Rod enzymes may be nonfunctional in the absence of MreB, such that the remaining aPBPs are insufficient to generate or maintain rod shape. Second, PopZ–H3H4–PBP2 does not form stable aggregates without pre-established poles. To test these possibilities, we induced PopZ– H3H4–PBP2 expression in BN11 cells with 0.4% arabinose for 12 h, followed by treatment with moenomycin (4 µg/ ml). After 1 h of inhibition, newly synthesized PG was labeled with BADA for 15 min. Despite inhibition of all aPBPs by moenomycin, induced BN11 cells continued to incorporate BADA (Fig. 4c), indicating that Rod enzymes remain active in the absence of MreBEc and thereby ruling out the first possibility. Thus, without a mechanism that retains Rod enzymes to specific locations, cells cannot initiate focused PG elongation.

Discussion

Although spherical shapes are energetically efficient and favored by physical principles, growing evidence suggests that the last common ancestor of modern bacteria was rod-shaped [37], and that the evolution of rod-like morphology likely coincided with the emergence of PG [56]. The rigidity of PG is a double-edged sword. It provides sufficient mechanical support for cells but also poses a major hurdle for cell growth and division. Because the entire PG layer is a single molecule, cell growth and division rely on the modification on the existing PG scaffold. To preserve cell width homeostasis while continuously remodeling the cylindrical PG, the elongation machinery in rod-shaped bacteria must fine tune its activity in response to subtle variations in local curvature. Conserved in most rods but absent in most spheres, MreB is an ancient protein that plays critical roles in rod-like morphogenesis [13, 54]. MreB is essential in nearly all rod-shaped bacteria that utilize dispersed, nonpolar elongation because it functions as an effective curvature sensor and dynamic regulator. As MreB filaments move in concert with the Rod polymerases RodA and PBP2, they align along regions of highest membrane curvature, thereby refining the spatial positioning of the elongation machinery [20-22].

In this study, we reprogrammed E. coli, the most thoroughly studied rod-shaped bacteria that elongates its PG laterally in a dispersed fashion, to adopt polar elongation—a mode typically restricted to distantly related species. By targeting a single core component of the Rod system—MreB or PBP2—we successfully redirected the entire system to the cell poles, thereby shifting PG elongation to the poles. In this case, as the nonpolar region is no longer the growth zone, the established cylindrical PG structure is sufficient to maintain cell width, where MreB filaments become nonessential. This cross-phylum shift of growth mode highlights the evolutionary plasticity of bacterial morphogenetic systems and suggests that elongation modes, though often conserved within lineages, can be rewired through targeted manipulation of core components.

Due to technical limitations, we cannot exclude the possibility that the reprogrammed, pole-elongating E. coli strains still incorporate trace amounts of PG in nonpolar regions—just as we cannot rule out that bacteria growing in nonpolar mode also insert small amounts of PG at the poles. These elongation modes are not necessarily mutually exclusive; rather, individual bacteria may employ a specific blend of both polar and dispersed growth strategies such as recently discovered in Caulobacteraceae and Streptomyces [3, 4]. However, these two elongation modes may rely on distinct mechanisms to maintain rod shape. Dispersed, nonpolar elongation depends critically on MreB filaments. In E. coli and B. subtilis, PG-depleted spheroplasts can spontaneously regenerate rod shape through curvature-dependent localization of MreB filaments [21, 57]. Similarly, spherical, PG-free M. xanthus spores employ polarity regulators to monitor PG assembly and direct molecular motors that transport MreB filaments—and associated Rod enzymes—away from future poles [35, 36]. By contrast, we propose that in the absence of MreB-mediated modulation, focused PG elongation can sustain rod shape only when cell poles are already established. Without poles, the uniform membrane curvature of spherical cells cannot spatially constrain focused PG synthesis, necessitating alternative polarity determinants such as FtsA, FtsZ, or DivIVA.

An unexpected result is that moenomycin, which inhibits aPBPs, causes MreBEc filaments to disperse (Fig. 3a). This effect is not likely due to the loss of rod shape because MreBEc still forms filaments in the spherical ΔrodZ cells (Fig. 3d). Rather than affecting PG directly, moenomycin locks aPBPs in their glycan-charged conformation [58, 59]. Using M. xanthus, we discovered that one of the moenomycin-bound aPBPs activates the endopeptidase DacB, which in turn, modifies PG and turns cells into spheres [17]. As endopeptidases are space-makers for the TPases in both PBP2 in the Rod system and aPBPs [1, 60, 61], moenomycin-bound aPBPs could modulate PBP2 in the Rod system through DacB-like endopeptidase in E. coli. Such a mechanism also implies that, beyond determining the localization of the entire Rod system [62], PBP2 may also regulate MreB filamentation. In support of this hypothesis, we found that blocking PBP2 directly with mecillinam disperses MreB filament in a similar manner (Fig. 3a).

Members of the Rhizobiales and Actinomycetales orders, having lost MreB, maintain rod-like morphology. Strikingly, both orders elongate dominantly from cell poles. Similar to our polar-elongating E. coli strains, the established nonpolar regions of these bacteria are seldom modified and thus do not require MreB-like cytoskeleton to maintain cell width homeostasis. Given that MreB is an ancient protein believed to have existed prior to the emergence of Rhizobiales and Actinomycetales [37], it is plausible that polar growth may have evolved from dispersed elongation as a consequence of MreB loss, which in Rhizobiales and Actinomycetales allows the repurposing of FtsA and FtsZ in the former, and the acquisition of DivIVA in the latter to recruit PG elongation machineries to cell poles [31, 32]. Notably, Streptomyces venezuelae can combine MreB-independent polar growth and MreB-dependent dispersed growth [4], which may represent an evolutionary intermediate as reliance on MreB diminished.

Materials and Methods

Bacterial strains, plasmids, and primers used in this study.

Strains and growth conditions

Bacterial strains, plasmids, and primers used in this study are listed in Table S1. E. coli strains were grown overnight in liquid LB medium with the appropriate antibiotic at 37 °C.

For fluorescent D-amino acid (FDAA, including BADA, HADA, and TADA) staining experiments, cells were incubated for 20 min at 37 °C in LB media supplemented with 60 µM FDAA. Cells were collected (9,000 g, 1 min) washed three times with liquid LB and resuspended in ⅕ of the original volume. For sequential staining, cells were incubated with 60 µM of the first FDAA for 15 min, washed three times with liquid LB, incubated with 60 µM the second FDAA for 15 min, and washed three times with liquid LB before imaging. To determine the roles of aPBPs, the Rod system, and MreB in PG elongation, moenomycin (10 µg/ml), mecillinam (100 µg/ml), and A22 (10 µg/ml) was added, respectively, to the culture in liquid LB media 1h before adding FDAA.

Cryo-EM

E. coli cultures were grown in liquid LB medium to OD600 ∼1. Cells were collected by centrifugation (3,000 g, 2 min) and resuspended in LB to a final OD600 of 12. 3 µl of the cell suspension was applied to a 1.2/1.3 200 mesh copper grid (Quantifoil) that were glow-discharged for 30 s at 15 mA. Grids were plunge-frozen in liquid ethane with an FEI Vitrobot Mark IV (Thermo Fisher Scientific) at 4 °C and 100% humidity, with a waiting time of 30 s, two-side blotting time of 2.5 - 3 s, and blotting force of 0. All subsequent grid handling and transfers were performed in liquid nitrogen. Images were acquired using a Thermo Fisher Scientific Titan Krios G4 transmission electron microscope.

Live cell imaging

Overnight E. coli cultures were diluted to OD600 0.1 in fresh liquid LB medium and grown at 37 °C to OD600 0.4 - 0.6 before imaging. For all imaging experiments, we spotted 5 μl of culture on agar (1.5%) pads. For the treatments with antibiotics, antibiotics were added to both the cell suspension and agar pads. The length and width of cells were determined from differential interference contrast (DIC) images using a MATLAB (MathWorks) script [17, 29, 35, 64]. The fluorescence of CFP, BADA, and TADA was excited by different lasers: CFP and HADA at 405 nm, GFP and BADA at 488 nm, and mCherry and TADA at 561 nm. For MreBMx-PAmCherrySW and PBP2-PAmCherry, PAmCherry was activated using a 405-nm laser (0.3 kW/cm2, 2 s), excited and imaged using a 561-nm laser (0.2 kW/cm2). DIC and fluorescence images of cells were captured using an Andor iXon Ultra 897 EMCCD camera (effective pixel size 160 nm) on an inverted Nikon Eclipse-Ti™ microscope with a 100× 1.49 NA TIRF objective under HILO illumination [29, 35, 45, 46].

Immunoblotting

The expression of MreBMx was determined by immunoblotting following SDS-PAGE using a polyclonal anti-MreBMx serum [40] and a goat anti-Rabbit IgG (H+L) secondary antibody, HRP (Thermo Fisher Scientific, catalog # 31460). The blots were developed with Pierce™ ECL Western Blotting Substrate (Thermo Fisher Scientific REF 32109) and a MINI-MED 90 processor (AFP Manufacturing).

Data availability

Source data will be provided for Fig. 1f, 2b, 2e, 4b.

BN04 cells grow slower than its parental strain NO59.

Averages and standard deviations were calculated from three technical repeats.

Acknowledgements

We thank Drs. Michael VanNieuwenhze and Yen-Pang Hsu for providing TADA and HADA, Drs. Randy Morgenstein, KC Huang, and Anthony Maurelli for sharing the strains NO59, NO56, TKL130, and ATM1504 and Dr. Gaya Yadav for the assistance on cryoEM imaging. Part of this work was supported by the National Institutes of Health grants GM129000 to B. N.. We received financial support from Dr. David R. Zusman, who played no role in the design, execution, or presentation of this work.