Brain wide analysis of cells responding to mating completion in the female brain.
(A) Overview of the experiment pipeline. After the activity labeling using TRAP, brain tissue was collected and cleared using SHIELD. The cleared tissue was imaged using a light-sheet microscope. The dataset was registered to a reference brain atlas and the number of tdTomato+ cells were quantified using ClearMap and ilastik.
(B) Representative image showing cell segmentation.
(C) Density of tdTomato+ cells per mm3 in larger brain regions. CTXpl: Cortical plate, CTXsp: Cortical subplate, STR: Striatum, PAL: Pallidum, VERM: Vermal regions, HEM: Hemispheric regions, TH: Thalamus, HY: Hypothalamus, MBsen: Midbrain, sensory related, MBmot: Midbrain, motor related, MBsta: Midbrain, behavioral state related, P: Pons.
(D) Heatmap showing density of tdTomato+ cells per mm3 in subregions. Each column indicates data from one subject. Each row indicates data from one subregion. MPN: Medial preoptic nucleus, MPA: Medial preoptic area, BNST: Bed nuclei of the stria terminalis, LPO: Lateral preoptic area, VLPO: Ventrolateral preoptic nucleus, MeA: Medial amygdaloid nucleus, CoA: cortical amygdaloid nucleus, BMP: Basomedial amygdaloid nucleus, posterior part, BLA: Basolateral amygdaloid nucleus, anterior part, BLP: Basolateral amygdaloid nucleus, posterior part, VMH: Ventromedial hypothalamic nucleus, Arc: Arcuate hypothalamic nucleus, DM: Dorsomedial hypothalamic nucleus, LH: Lateral hypothalamic area, SCh: Suprachiasmatic nucleus, PMV: Premamillary nucleus, ventral part, AO: Anterior olfactory area, GENv: Geniculate group, ventral thalamus, PS: Parastrial nucleus.
(E-H) Representative coronal hemisphere image showing expression of tdTomato. Images from Appetitive group are shown in left column, images from Completion group are shown in right. Scale bar 500 μm.
(I) Density of tdTomato+ cells per mm3 in a subset of subregions. The full list of brain regions is shown in Figure S2.
All data are shown as mean ± 95% confidence interval and were analyzed by Student’s t-test with Benjamini/Hochberg correction (C: FDR = 0.05, I: FDR = 0.10). Detailed statistical values are shown in Table 2 and Table 3. Appetitive (green), n = 4. Completion (orange), n = 5. *p < 0.05, ns, not significant.