Introduction

The development of an animal’s tissues or organs necessitates the establishment of left–right (LR) asymmetry (Lobikin et al., 2012). This includes the LR body axis that is vital for visceral distribution (Pohl and Bao, 2010; Wang et al., 2012) and chiral morphogenesis, crucial for the formation of tissue/organ architecture (Hozumi et al., 2006; Noël et al., 2013; Spéder et al., 2006; Veerkamp et al., 2013). However, the mechanism underlying the spontaneous emergence of LR asymmetry remains largely unknown. Cell chirality, a mechanical behavior characterized by biased cell orientation or rotation (either clockwise (CW) or anticlockwise (ACW)), has been proposed as the origin of LR asymmetry at the tissue level (Danilchik et al., 2006; Lobikin et al., 2012). For example, blastomeres in Caenorhabditis elegans embryos exhibit a chiral skew event, leading to uneven cell distribution (Naganathan et al., 2014; Pohl and Bao, 2010). In a later stage of embryonic development, this chiral mechanics causes collective motion in epithelial morphogenesis (Hozumi et al., 2006; Sato et al., 2015; Taniguchi et al., 2011), eventually affecting the formation of genitalia (Sato et al., 2015) and the axial torsion of the hindgut (Hozumi et al., 2006; Taniguchi et al., 2011), In addition to its role in embryonic development, the presence of cell chirality can be recognized by its ability to generate cellular torque (Liu et al., 2016; Naganathan et al., 2014), promote cell migration with LR bias,(Chen et al., 2012; Xu et al., 2007; Yao and Ding, 2020; Yao et al., 2021) or form specific alignment at the multicellular level (Chen et al., 2012; Hu et al., 2018; Wan et al., 2011). Through cell–cell communication, the chiral behavior results in the LR-biased assembly of the multicellular structure (Chen et al., 2012; Chin et al., 2018) and regulates the permeability of intercellular junctions (Fan et al., 2018).

Actomyosin activity is crucial for chirality at the organ (Spéder et al., 2006), tissue (Bertet et al., 2004), and cellular levels (Tamada and Igarashi, 2017). In in vivo systems, the expression of cell chirality can be suppressed by inhibiting actomyosin activity (Noël et al., 2013). In in vitro systems, the expression of cell chirality depends on actomyosin activity along micropattern boundaries (Chen et al., 2012; Tee et al., 2015). Two classes of actin filaments play major roles in actomyosin activity: dorsal stress fibers and transverse arcs (Hotulainen and Lappalainen, 2006; Tojkander et al., 2012). Dorsal stress fibers, also referred to as radial fibers, have one end anchored to the substrate through a focal adhesion, whereas the other end points radially toward the nucleus. Transverse arcs are curved actin filaments produced by the endwise annealing of myosin bundles, appearing as rings or nearly closed arcs centered around the nucleus. When cultured on micropatterned circles, radial fibers are unidirectionally tilted, forming a distinct chiral pattern of actin filaments (Tee et al., 2015). This pattern drives the chiral torque and rotation of cells (Bao et al., 2020; Kwong et al., 2019; Liu et al., 2016).

The molecular handedness of actomyosin filaments is essential for cell chirality. For example, formin-dependent actin polymerization has been proposed to cause the righthanded axial spinning of radial fibers, resulting in the ACW chiral pattern of actin filaments (Tamada and Igarashi, 2017; Tee et al., 2023; Tee et al., 2015). In addition, the overexpression of α-actinin-1 that crosslinks with the actin filament or modulates actin polymerization can lead to CW chirality (Chin et al., 2018; Djinović-Carugo et al., 1999; Jalal et al., 2019; Tee et al., 2023). However, because an actin filament is formed only as a right-handed double helix, it remains unclear how a single form of molecular handedness can manifest diverse chirality at the cellular level, which is even observed across different cell types (Liu et al., 2016; Wan et al., 2011). Furthermore, the role of crosslinking or altered polymerization of right-handed actin filaments in chirality reversal remains vague and unresolved.

In this study, we report the reversal of cell chirality achieved by switching dominance between the two classes of actin fibers. During cell attachment and spreading, we first observed the reversal of chiral rotation of the nucleus, shifting from a CW-biased to an ACW-biased direction. Using micropatterning, we determined that the reversal of chirality was dependent on an increase in the projected cell area. This phenomenon was consistently observed across various cell types. Based on the analysis of actin distribution by using small-molecule drugs, we found that the polymerization of radial fibers originating from their barbed end near the cell edge is essential for ACW chirality. However, when cells were cultured on small islands or an inhibitor was used to suppress radial fibers, transverse arcs displayed a well-organized CW swirl approaching the cell center. Furthermore, perturbations in transverse arcs, either through the suppression of myosin IIa activity or gene silencing of mDia2 and tropomyosin 4 (Tpm4), enhanced ACW chirality. Because transverse arcs are formed at the dorsal surface of the cell cortex, the sarcomere-like contractile structure may serve as a torque dipole that rolls against the plasma membrane, eventually leading to the CW swirling of transverse arcs. Thus, an imbalance between the two classes of actin stress fibers results in the reversal of chirality. This study elucidated a general and previously unidentified mechanism underlying chirality reversal, providing a unique opportunity to further explore the role of cell chirality in regulating tissue morphogenesis.

Results

Cell chirality is reversed from CW to ACW bias during cell spreading

Attachment to a cell-adherent substrate is a prerequisite for expressing cell chirality in 2D culture (Chen et al., 2012; Wan et al., 2011). We performed time-lapse microscopy to record cell spreading and nuclei rotation during the spreading of human foreskin fibroblast (HFF-1) on a culture dish. From 0 min to 240 min, cells underwent isotropic spreading and then anisotropic spreading until reaching their normal morphology on the culture dish (Figure 1A; Video 1). To assess cell chirality, cell nuclei were tracked using binarized nuclei images to record the angular velocity of nuclei at 5 min intervals (Figure 1C and D). Notably, the nucleus rotation transitions several times from CW to ACW (Figure 1D). To determine potential cell culture bias, we measured the angular velocity of 26 cells and calculated the percentage of CW and ACW rotation every 20 minutes throughout the timelapse imaging. Our results revealed that nucleus rotation was CW-biased at the beginning but reversed to ACW-biased over time (Figure 1E). Additionally, the cell projected area increased (Figure 1F) and the circularity of cell morphology decreased (Figure 1G and H). Because cells with non-circular shape would inhibit the expression of chiral rotation of cells (Liu et al., 2016), the increased projection area is more likely the reason for chirality reversal. To clarify this, the probability of ACW/CW rotation was further analyzed against the averaged projected area with different circularity. For circularity greater than 0.7, reversal of chirality was observed (Figure 1I). In contrast, reversal was not as apparent for cell circularity below 0.7 (Figure 1J). Together, these results suggest that chiral nucleus rotation may require a circular cell shape and can be reversed from CW to ACW with the increase of cell projected area.

Rotational bias of cell nuclei reversed from CW to ACW bias during cell attachment.

(A) Phase contrast and H33342 staining of nuclei (blue) at 0 min and 240 min of the time-lapse imaging (Video 1). (B) Imaging processing of nuclei tracking. (Left) After binarization of nuclei, the ellipses of nuclei were shown for time point 0 min (white) and 240 min (blue). (Right) The boundary of cell nuclei at different time points, demonstrating the tracking of nuclei from the beginning to the end point, colored with a gradient from white to blue. (C) Schematic showing calculation of angular velocity using the angle difference of the nucleus at two consecutive images, 5 min per interval for 4 hour and 30 min. (D) The angular velocity of the nucleus measured for one cell. (E) Probability of ACW rotation of nuclei for each 20 min interval (n = 26). (F) Cell projected areas of each cell measured by phase contrast images after initial attachment of cells, with 20 min interval (mean shown in red). (G) Circularity calculated by the area and perimeter of cells. (H) Circularity of each cell calculated with 15 min interval (mean shown in red). (I and J) Probability of ACW/CW rotation of nuclei against cell projected area with circularity greater than 0.7 (I) or less than 0.7 (J). Two-sample equal variance two-tailed t-test. Scale bar: 100 μm.

Cell chirality is reversed from CW to ACW bias with incremental change of micro-island area

During cell attachment and spreading, the actin cytoskeleton undergoes a complete reorganization, such as formation of focal adhesions, recruitment of formin, maturation of actin filament stress fibers, and activation of Arp2/3 in lamellipodia. Thus, the chirality reversal may be a result of those dynamic processes but not necessarily the cell projected area in the transient period. To directly assess the role of the cell projected area, we confined the cell spreading in an isotropic form through applying arrays of fibronectin-coated circular islands with different areas, surrounded by cell-repellent Pluronic coating (Figure 2A). On fibronectin-coated micro-islands, time-lapse measurement started after the cells had fully spread to the defined area without further morphological dynamics. HFF-1 fibroblasts were again used to record nucleus rotation on micro-islands. Interestingly, when cells spread on the 500 μm2 pattern, the nucleus rotation was neutral (Figure 2B). Starting from 750 μm2, nucleus rotation became CW-biased (45.83 ± 1.96 % ACW with p-value < 0.01), which was consistent with the chiral bias of cells during spreading on culture dish. From 1000 μm2 to 2500 μm2, the chiral nucleus rotation changed to neutral and then reversed to ACW-biased (63.43 ± 2.90 % ACW with p-value < 0.0001) on 2500 μm2 of micro-islands. Thus, the results on micro-islands provide direct evidence that cell projected area was responsible for chirality reversal. To further prove that high circularity is required for area-dependent chirality reversal, cells were cultured on other non-circular shapes, including a triangle, square, and rectangle, with areas exhibiting CW (750 μm2) or ACW (2500 μm2) bias on circular islands. The reversal of cell chirality from small to large island was not observed in these cases, indicating that circular islands are required (Figure 2—figure supplement 1). Furthermore, to test the universality of such phenomenon, we performed nucleus rotation analysis on two other cell types (Figure 2C to D), C2C12 mouse myoblasts and human mesenchymal stem cells (hMSCs). All assessments showed the same chirality reversal depending on cell projected area, demonstrating the universality of this relationship.

Reversal from CW to ACW chirality with increasing micro-island area.

(A) Micropatterned islands of cell-adherent fibronectin and cell-repellent Pluronic F127, with areas from 500 μm2 to 2500 μm2, on which rotational bias was measured based on the angular velocity of the long axis of the binarized nucleus ellipse. After the cell was fully spread on the micropatterned island (2-3 hours), time-lapse images were taken every 10 min for 2–3 hours to measure the angular velocity. (B to D) Probability of ACW/CW rotation of HFF-1 human fibroblasts (B), C2C12 mouse myoblasts (C), and human mesenchymal stem cells (hMSCs) (D) on micro-islands with varied area within 3 hours. Mean ± SEM. Two-sample equal variance two-tailed t-test.

Actin distribution upon drug treatment

To investigate the mechanism, we next examined the actin cytoskeleton on the aforementioned islands. Actomyosin cytoskeleton is known to play important role in the cell chirality (Chen et al., 2012; Wan et al., 2011). More importantly, when cultured as single cells on micropatterned circles, a chiral swirling pattern of radial actin fibers has also been reported (Tee et al., 2015). We observed the actin structure of cell spreading on circular pattern that exhibiting ACW (2500 μm2, large pattern) and CW (750 μm2, small pattern) bias.

When cultured on the 2500 μm2 pattern (Figure 3A, left), actin structure at the lamella arises as a chiral swirling pattern of radial fibers in conjunction with the transverse arcs (Hotulainen and Lappalainen, 2006; Tojkander et al., 2012). Using automated image processing to analyze the tilting angle of radial fibers with respect to the radial axis of each cell (Bao et al., 2020), an ACW tilting was revealed (Figure 3—figure supplement 1), suggesting the role of actin in nucleus rotation. To clarify the causal relationship between the nucleus and the actin structure, we observed actin organization of cell seeded on micropatterns after enucleation. By comparing actin filaments for the normal and enucleated HFF-1 fibroblasts on 2500 μm2 island, the ACW bias of actin filament was unchanged (Figure 3—figure supplement 2). These results suggest that the chiral rotation of the nucleus is likely a result of chiral structure of actin, rather than the chiral rotation of the nucleus causing the formation of actin chiral structure.

Actin at cell periphery promotes ACW chirality.

(A) Fluorescent staining of F-actin (white) by phalloidin, DAPI-stained nucleus (blue), and a stacked image showing heatmap distribution on a 2500 μm2 island. (B) Fluorescent staining of F-actin (white) by phalloidin, DAPI-stained nucleus (blue), and a stacked image showing heatmap distribution on a 750 μm2 island. (C and D) Probability of ACW/CW rotation on (C) 2500 μm2 of control (n = 57), treatment of A23 (n = 50) and LatA (n = 54), and (D) 750 μm2 for control (n = 34) and treatment of A23 (n = 70) and LatA (n = 43). Mean + SEM. Two-sample equal variance two-tailed t-test. (E) Fluorescent staining of F-actin (white) by phalloidin and DAPI-stained nucleus (blue) with treatment of A23 (left) and LatA (right) on a 2500 μm2 island. (F) Stacked image of (E) showing distribution of actin by heatmaps. (G) Fluorescent staining of F-actin (white) by phalloidin and DAPI-stained nucleus (blue) with treatment of A23 (left) and LatA (right) on a 750 μm2 island. (H) Stacked image of (G) showing distribution of actin by heatmaps. (I) Differential heatmap showing intensity differences of actin, comparing the treatment of A23 (left) and LatA (right) to the control on a 2500 μm2 island. (J) Curves of actin intensity from cell center to boundary (left) and differential actin intensity (right) comparing A23 and LatA treatment to the control on a 2500 μm2 pattern. (K) Differential heatmap showing intensity differences of actin, comparing the treatment of A23 (left) and LatA (right) to control on a 750 μm2 island. (L) Curves of actin intensity from cell center to boundary (left) and differential actin intensity (right) comparing A23 and LatA treatment to the control on a 750 μm2 pattern. Scale bar: 20 μm.

On the other hand, for cells on the 750 μm2 pattern, CW rotation of nucleus was observed (Figure 2B). However, only ventral fibers and transverse arcs remained in these cells, while radial fibers were significantly reduced (Figure 3B, left). To visualize this structural difference, we used image stacking. On 2500 μm2 pattern, the highest intensity showed a ring shape where the radial fibers were located (Figure 3A, right). In contrast, on 750 μm2 pattern, the actin ring was replaced by an accumulation of actin at the cell center (Figure 3B, right). Thus, while actin cytoskeleton was the major driver for chiral rotation of nucleus, the presence of radial fibers was not always necessary.

This absence of radial fibers is unexpected, as the chiral pattern of radial fibers is a hallmark of cell chirality (Tee et al., 2015). To further investigate this, we applied a series of cytoskeleton-related inhibitors on HFF-1 fibroblasts on two representative micro-islands, 750 μm2 (small island) and 2500 μm2 (large island). We identified A23187 Calcium Ionophore (A23) (Shao et al., 2015), Latrunculin A (LatA) (Yarmola et al., 2000), NSC23677 (NSC) (Levay et al., 2013; Spiering and Hodgson, 2011), SMIFH2 (Kim et al., 2015; Rizvi et al., 2009), and Lysophosphatidic acid (LPA) (Kranenburg et al., 1999; Sheng et al., 2015), to modulate actin cytoskeleton. LatA inhibits F-actin polymerization by forming a 1:1 molar complex with G-actin. A23187 Calcium Ionophore (A23) stimulates calcium flux into the cell and perinuclear actin formation. LPA activates RhoA, stimulating actin stress fiber formation. NSC inhibits Rac1, which induces actin-related protein 2/3 (Arp2/3) complex actin polymerization. Formins were also studied with the formin FH2 domain inhibitor SMIFH2. On 2500 μm2 island, the original nucleus ACW chirality (63.43 ± 2.90 % ACW) remained unchanged by A23 treatment (Figure 3C), was neutralized by LPA treatment, and became even more ACW-biased under NSC and SMIFH2 treatments (Figure 3—figure supplement 3). In contrast, treatment of LatA could reverse the chirality to CW bias (45.58 ± 2.15% ACW, Figure 3C). Additionally, CW bias on 750 μm2 island was unaffected by the LatA treatment (Figure 3D), but neutralized by NSC, SMIFH2, and LPA (Figure 3—figure supplement 3). More interestingly, A23 reversed the nucleus rotation from its original 45.83 ± 1.96 % ACW to 54.00 ± 1.60 % ACW bias (Figure 3D). Based on the above results, treatment of LatA and A23 appears to be effective in reversing the induced ACW/CW bias on large and small island, respectively.

We next analyzed the actin distribution of HFF-1 fibroblasts in response to A23 and LatA treatment. Compared to untreated cells on 2500 μm2 pattern, actin was lessened around the nucleus with A23 treatment. More ventral stress fibers across the cell nucleus could be seen with LatA treatment (Figure 3E). To statistically illustrate actin distribution upon treatment, we applied image stacking. On 2500 μm2 pattern, A23 treatment pushes the actin toward the cell edge, while in contrast, the LatA treatment brought actin closer to the center (Figure 3F). Similar effects were seen for cells on 750 μm2 pattern. More interestingly, radial fibers were restored under A23 treatment (Figure 3G and H). To highlight this difference, we used a differential heatmap by subtracting the stacked actin image between treated and untreated cases. A23 clearly appeared to concentrate actin at the cell edge but reduce it at the center (Figure 3I), and a distinct peak of actin intensity was observed immediately adjacent to the cell edge (dashed line, Figure 3J). In contrast, under LatA treatment, actin was concentrated around the nucleus while the peripheral ring of actin was more reduced than that of the untreated control (Figure 3I and J). The same effects were also observed in cells on 750 μm2 islands (Figure 3K and L). As polymerization of radial fibers arose from the barbed end near the leading edge, this suggests an increased polymerization of radial fibers upon A23 treatment, which may account for the ACW chiral rotation. Particularly for cells on 750 μm2 pattern, it was possible to change the original CW rotation to ACW rotation upon restoration of radial fibers. On the other hand, as an inhibitor of F-actin polymerization, LatA, appeared to reduce actin filament at the cell edge (Higashida et al., 2008) on both 2500 μm2 and 750 μm2 patterns, suggesting a suppressed actin polymerization which may account for the CW chirality.

Role of actin polymerization of radial fibers for ACW chirality

How does actin polymerization near the cell edge affect cell chirality? A heatmap only shows the overall distribution of actin, but not its dynamics. To better elucidate this mechanism, we visualized live actin organization by transfection of either actin-GFP, or Lifeact, in HFF-1 fibroblasts. Cells on the 2500 μm2 island were chosen due to their easier observation. We first examined the actin organization of the untreated control cells with Lifeact (Figure 4A). Time-lapse microscopy showed that the centripetal growing radial fiber was pointed toward the cell center with an inward flow of transverse arcs (Figure 4A; Video 2). Notably, the radial fibers began to tilt rightward with the increase in length in untreated control cells. Eventually, this right-tilted growth direction of radial fibers, accompanied by retrograde flow, drove an overall ACW rotation of the entire cytoskeleton around the cell nucleus. This resulted in a chiral swirling pattern of actin filament, showing a strong correlation with ACW nucleus rotation.

Polymerization of radial fibers drives ACW chirality.

(A) Lifeact-GFP transfected cell showing actin organization in the control on 2500 μm2 circular islands. With the increase in length, the radial fibers start to tilt rightward. Following the established direction, the transverse arcs (green arrows) flow toward the cell center and cause an overall ACW rotation of the entire cytoskeleton. (B and C) Photobleaching in a ring shape parallels the circumference of actin-GFP transfected cells of the untreated control (B) or LatA-treated samples (C). A kymograph (yellow box) of the photobleached untreated control was used to measure the centripetal velocity of transverse arcs and elongation rate of radial fibers. The green dashed line indicates the photobleached location of actin-GFP, while red and green arrows show the elongation of radial fiber and translocation of transverse arc to the cell center, respectively. In each cell sample, radial fiber elongation velocity was compared against the transverse arc translocation velocity. The velocity was taken as the average of 2–3 measurements from different locations of the same cell. (D) The radial fiber elongation velocity (left) and the transverse arc translocation velocity (right) in untreated control and cells with LatA treatment. For radial fiber elongation velocity measurement, n = 11 for the control and n =14 for LatA treatment, based on 4–5 cells. For the transverse arc translocation velocity measurement, n = 16 for the control and n =17 for LatA treatment based on 4–5 cells. Mean ± SEM. Two-sample equal variance two-tailed t-test. (E) Lifeact-mRuby transfected cell showing actin organization of 2500 μm2 circular pattern with LatA treatment. Motion vectors (green) demonstrate the accumulated motion of the actin structure. Polar histogram shows the distribution angle of motion vectors, indicating the transverse arcs’ CW swirling. Scale Bar: 20 μm.

To better elucidate the role of actin polymerization of radial fibers, we compared the elongation rate of the radial fibers and the retrograde flow velocity of the transverse arcs. Actin-GFP transfected HFF-1 cells on 2500 μm2 pattern. We observed that the retrograde flow of transverse arcs was faster than the elongation rate of radial fiber (Figure 4B), which is consistent with the literature (Tee et al., 2015). This suggests that the retrograde flow of transverse arcs is not dependent solely on the elongation of radial fibers. More importantly, the velocity of radial fiber elongation was reduced by LatA treatment, while the inward flow velocity of transverse arcs remained unchanged compared to the control (Figure 4C and D). Thus, these results suggest that actin polymerization directly contributes to the elongation of radial fibers but not the retrograde flow of transverse arcs.

Altogether, our results suggest that inward-growing radial fibers with rightward tilt are the main contributors to ACW chirality. When treated by LatA (Figure 4D) or cultured on small islands that suppress the radial fibers (Figure 3B; Video 3), the ACW bias was reversed to CW bias. Notably, rightward tilting during actin polymerization could be explained by the helical structures of actin (Tamada and Igarashi, 2017; Tee et al., 2015). At focal adhesion, formin proteins cap and tether the barbed ends of actin filaments. When new actin monomers are incorporated into the right-handed double helix, which drives the other free end with a right-handed axial spinning (Video 4) (Tee et al., 2015).

Transverse arcs contribute to CW chirality

While actin polymerization of radial fibers directly contributes to the ACW rotation of cells, the appearance of CW bias is unclear, as the reduced actin polymerization may simply neutralize chiral bias. For LatA-treated cells with Lifeact transfection, we noticed a very organized CW swirling of transverse arcs that approached the cell center during retrograde flow (Video 5). Using optical flow analysis, such inward flow with CW-bias swirling was observed to drive the cell to commit CW rotation (Figure 4E). This finding explains the increased actin concentration near the cell center shown by phalloidin staining of LatA-treated cells on the large island (Figure 3I). Notably, in some cases, the CW-bias of nucleus rotation occurred only in the presence of transverse arcs that swirled and wrapped towards the cell center with CW-bias, without distinct, bundled radial fibers (Video 6). Moreover, for cells on small islands, the nucleus rotation was solely driven by the retrograde flow of transverse arcs, without apparent radial fibers (Video 3). Thus, such CW swirling of transverse arcs may occur on itself without the need for radial fibers.

To further investigate this, we disturbed the major components of the transverse arcs. Transverse arcs are comprised of curved actomyosin bundles (Tamada and Igarashi, 2017; Tee et al., 2015) form in a periodic pattern through end-to-end annealing of myosin II and α-actinin (Tojkander et al., 2012). Importantly, myosin II bundles contribute to transverse arc contraction by walking on actin filament, which may lead to the higher speed in retrograde flow of transverse arcs (Figure 4B). Thus, myosin II or α-actinin perturbation would directly influence the transverse arc. We first applied overexpression of α-actinin, which may enhance the CW chirality in two ways. First, as the main component of transverse arcs, α-actinin may enhance its formation. Second, it also cross-links radial fibers, which may restrict and suppress their axial spinning in ACW chirality. We found that the overexpression of α-actinin indeed enhanced CW rotation (Figure 5—figure supplement 1).

Next, we applied Y27632, an inhibitor of Rho-associated kinase (ROCK), to down-regulate the function of myosin II (Salhia et al., 2008). Interestingly, treatment with Y27632 significantly reduced the highly enriched myosin II in transverse arcs observed in untreated cells, showing that actomyosin activity was disrupted (Figure 5A). We then compared actin and myosin IIa intensity distribution using a heatmap of a 2500 μm2 pattern. For non-treatment control (Figure 5B), myosin IIa was distributed with the highest intensity as a ring and colocalized with the actin ring. Remarkably, in the Y27632 treated cell (Figure 5B), while the actin ring remained unchanged, the myosin IIa failed to colocalize with it, and the myosin ring was heavily damaged. To quantify this, we analyzed myosin IIa median intensity and its colocalization with actin filament using Pearson’s R-value (Figure 5C and D), in which a higher value of median intensity indicated more activated myosin IIa, and higher r value indicated more myosin IIa colocalized with actin filaments. Significant reductions in myosin IIa intensity and its colocalization with actin filament were seen upon Y27632 treatment. With such disruption of myosin IIa function, we measured nucleus rotation under Y27632 treatment on 2500 μm2 and 750 μm2 islands. The ACW nucleus rotation was enhanced on both islands (Figure 5E and F). Similarly, this enhanced ACW rotation observed in cells treated with SMIFH2 and NSC (Figure 3—figure supplement 3) can also be explained by their cross-inhibition to myosin II (Nishimura et al., 2021; Shibata et al., 2015). In sum, these results suggest that myosin IIa activity of transverse arc is responsible for the CW-bias of cells.

Inhibition of myosin IIa enhances ACW chirality.

(A) Fluorescence staining of F-actin (red) by phalloidin, immunofluorescence-stained myosin IIa (yellow), and DAPI-stained nucleus (blue) of the control and cells with myosin IIa inhibitor Y27632 a 2500 μm2 pattern. (B) Stacked image of (A) showing heatmap distribution of actin (left) and myosin IIa (right). (C) The median intensity of myosin IIa in control (n = 52) and Y27632-treated (n = 41) cells. Mean± SEM. Two-sample equal variance two-tailed t-test. (D) Colocalization analysis by Pearson’s R-value of myosin IIa on actin filaments in control (n = 52) and Y27632-treated (n = 41) cells. Mean ± SEM. Two-sample equal variance two-tailed t-test. (E) Probability of ACW/CW rotation of control (reused data from Figure 3D, n = 57) and Y27632-treated (n = 53) cells on 2500 μm2 pattern. (F) Probability of ACW/CW rotation of control (reused data from Figure 3E, n = 34) and Y27632-treated (n = 53) cells on 750 μm2 pattern. Mean + SEM. Two-sample equal variance two-tailed t-test. Scale Bar: 20 μm.

Role of myosin IIa and transverse arc on CW chirality

To further investigate the role of myosin IIa and transverse arc in the CW chirality, we applied siRNA gene silencing on mDia2. mDia2 typically nucleates tropomyosin-decorated actin filaments, which recruit myosin II and anneal endwise with α-actinin-crosslinked actin filaments. The sarcomere-like contractile unit eventually condenses to myosin II-containing transverse arcs (Tojkander et al., 2011). We first evaluated the myosin IIa distribution of the control and mDia2-silenced cells. We reduced the protein expression upon siRNA (Figure 6A). Interestingly, while the myosin ring was heavily disrupted by mDia2 silencing, some myosin IIa was still observed at the region of transverse arcs (Figure 6B). In addition, the actin ring remains unchanged. Myosin IIa median intensity analysis and its colocalization with actin show that myosin IIa only partially dislocates from the actin ring, without significant reduction of its intensity (Figure 6C). Regarding nucleus rotation, mDia2 silencing appears to promote ACW rotation on both 2500 μm2 and 750 μm2 islands (Figure 6D and E). An opposite effect was seen by transfection of GFP-mDia2 in the overexpression assay. Thus, myosin IIa binding on tropomyosin decorated actin is required for CW nucleus rotation, and mDia2 can serve as an upstream endogenous factor to regulate it.

Myosin IIa binding on actin fibers drives CW chirality.

(A) Western blotting validating the silencing effect of mDia2 siRNA transfection compared to the control. (B) Fluorescent staining of mDia2–silenced HFF-1 cell on a 2500 μm2 micropattern with myosin IIa (yellow) and phalloidin-stained (red) F-actin with the corresponding distribution heatmap. (C) The myosin IIa intensity analysis by the median intensity (left) and colocalization analysis by Pearson’s R-value (right), comparing the control (n = 15) and mDia2-silenced (n = 13) samples regarding the intensity of myosin IIa images and the colocalization of myosin IIa with actin fluorescence images. Mean ± SEM. Two-sample equal variance two-tailed t-test. (D) Probability of ACW/CW rotation on 2500 μm2 pattern with untreated control (reused data from Figure 3D, n = 57), mDia2 silencing (n = 48), and overexpression (n = 25). (E) Probability of ACW/CW rotation on 750 μm2 pattern with untreated control (reused data from Figure 3E, n = 34), mDia2 silencing (n = 53), and overexpressing (n = 22). Mean + SEM. Two-sample equal variance two-tailed t-test. (F) Western blotting validating the silencing effect of Tpm4 siRNA transfection compared to the control. (G) Fluorescent staining of Tpm4-silenced HFF-1 cell on a 2500 μm2 pattern with myosin IIa (yellow) and phalloidin-stained (red) F-actin with DAPI (blue), and the corresponding distribution heatmap. Differential heatmap shows the intensity difference between the actin of the Tpm4-silenced cells and the control on a 2500 μm2 pattern (right). (H) The myosin IIa intensity analysis by the median intensity (left) and colocalization analysis by Pearson’s R-value (right), comparing the control (reused data from (C), n = 15) and Tpm4 silenced (n = 10) samples in the intensity of myosin IIa images and the colocalization of myosin IIa with actin fluorescence. Mean ± SEM. Two-sample equal variance two-tailed t-test. (I) Probability of ACW/CW rotation on 2500 μm2 pattern with untreated control (reused data from Figure 3D, n = 57) and Tpm4-silenced cells (n = 44). (J) Probability of ACW/CW rotation on 750 μm2 pattern with untreated control (reused data from Figure 3E, n = 34) and Tpm4-silenced cells (n = 48). Mean + SEM. Two-sample equal variance two-tailed t-test. Scale Bar: 20 μm. GAPDH was used as a loading control in (A) and (F).

To further prove the essence of myosin II binding on the tropomyosin-decorated actin, we applied siRNA gene silencing on tropomyosin 4 (Tpm4). Among the isoforms, Tpm4-decorated actin filaments were particularly important for recruitment of myosin II, as Tpm4’s presence on the transverse arcs coincides with the incorporation of myosin II. As an essential facilitator for the gliding motion of myosin II on actin filaments, tropomyosin would shift to cover or disclose the myosin-binding site on the actin filament (Ebashi, 1972) and accelerate myosin head translocation to each of the myosin-binding sites (Hundt et al., 2016). We found that Tpm4 was colocalized with actin filaments (Figure 6—figure supplement 1) and could be significantly reduced upon siRNA treatment (Figure 6F). Interestingly, based on the distribution heatmap of myosin IIa, the ring pattern in control (Figure 5B) was eliminated in Tpm4-silenced cells (Figure 6G). Moreover, the transverse arcs became less apparent, and the actin ring was closer to the periphery of cells (Figure 6G). Notably, myosin IIa intensity and colocalization were both statistically lower in Tpm4-silenced cells (Figure 6H), implying that the Tpm4 silencing strongly disrupts the attachment of myosin II on actin filaments. Compared to the silencing of upstream mDia2, under which actin condensation still occurs, Tpm4 silencing seems to have been more effective and specific in breaking the binding of myosin IIa on actin filaments. As a result, the condensation of actin filaments in the transverse arcs was also damaged. Critically, the nucleus rotation of HFF-1 under Tpm4 silencing exhibited much greater ACW chirality on both the 2500 μm2 (from 63.43 ± 2.90 % ACW to 81.64 ± 2.79% ACW, Figure 6I) and 750 μm2 patterns (from 45.83 ± 1.96 % ACW to 61.37± 3.09 % ACW, Figure 6J). In contrast, Tpm1, Tpm2, and Tpm3 knockdown did not show any noticeable effect on chirality (Figure 6—figure supplement 2). Based on the above results, we can conclude that the myosin IIa binding and its gliding motion on Tpm4-decorated actin filament is important for cell expression of CW chirality.

Actin height profile disclosed the transverse arcs and radial fibers layering

Myosin II and V have been shown to be left-handed spiral motors on the right-handed actin helix (Ali et al., 2002; Beausang et al., 2008). During the gliding motion, the left-handed walking of myosin II (Kovács et al., 2007) could, on the other hand, cause left-handed twirling of an actin filament about its axis (Beausang et al., 2008). When near a surface or a boundary, such chiral processes cause spinning of individual filopodia of a growth cone (Tamada et al., 2010), chiral flow of the cell cortex (Danilchik et al., 2006; Furthauer et al., 2013; Pohl and Bao, 2010), and right-handed clockwise cell migration (Tamada and Igarashi, 2017). Thus, the contractile unit composed of left-handed-walking myosin II on left-handed-twirling of actin filaments may also serve as active actomyosin torque dipoles. If located near a surface, such as the cell cortex, actomyosin torque dipoles could cause right-screw rotation against the surface, eventually causing the transverse arc to swirl in the CW direction.

To explore the location of the transverse arc, we observed the actin structure and myosin distribution in the height profile. According to previous findings, the actin network has two distinct, vertically separated layers. For example, in U2O2 cells, dorsal stress fibers, also called radial fibers attached to focal adhesion, are in the lower layer, while the contractile actin arcs are in the upper layer (Burnette et al., 2014). With fluorescence staining of actin and immunofluorescence staining of myosin IIa, we observed the actin structure and myosin IIa using z-stack with confocal microscopy. The maximum projection and height profiles were created using ImageJ. We found that the maximum projection of actin and myosin IIa was colocalized (Figure 7A and B). More importantly, based on the height profile from ImageJ, two distinct layers of actin, one near the ventral substrate and one near to the dorsal surface of cells, were seen (green arrows in Figure 7A and B). However, myosin IIa was only seen near the dorsal surface, suggesting that the transverse arc was formed at the dorsal layer (Figure 7A, right). We then investigated the actin structure of the Tpm4-silenced sample. A distinct layering of actin could again be observed with z-direction scanning (Figure 7C; Video 7). To visualize the structure, part of the actin was zoomed in on, and the level of actin was given different colors. It was observed that the two layers were more separated, whereas the radial fibers near the cell periphery were indeed located at the ventral surface, and the transverse arcs were near the dorsal surface of the cells. Together, these results suggest that the CW-bias of transverse arcs could be a result of chiral processes near the dorsal surface. The transverse arcs could be observed above the nucleus with conjunction to a perinuclear actin cap (Figure 7— figure supplement 1). Thus, the transverse arcs’ CW-bias swirling and wrapping may eventually exert force causing nucleus rotation.

Actin cytoskeleton and myosin IIa height profile.

(A) The maximum projection of fluorescence staining of F-actin with phalloidin (left) and immunofluorescence staining of myosin IIa (right), with the side view showing the height profile of the cell from the region of interest (top), as indicated by the dashed green line on 2500 μm2 pattern. Myosin images represent the bottom region and middle region (right). (B) The merged fluorescence images of F-actin (red) and myosin IIa (yellow). The height profile with zoom-in (blue box) at the region of interest (right) is indicated by the dashed green line (left). (C) The maximum projection of F-actin fluorescence staining by phalloidin with Tpm4-silenced HFF-1 cells. The side view (top) shows the height profile of the cell from the region of interest (green line). We zoomed in at the lower right region (bottom) to visualize the structure. The F-actin structure at the bottom focal plane, from 0 to 0.3 μm, is labeled in blue, while the two subsequent sections above are labeled purple and green. The actin image represents the bottom region and middle region (lower right), showing the radial fibers at the base and the transverse arcs at the upper layer, near the cell ceiling. Scale Bar: 20 μm.

Discussion

In this study, we first observed chiral reversal from CW to ACW bias during cell spreading. Using micropatterning, the CW bias of nucleus rotation on smaller islands was reversed to ACW bias with increased area of micro-islands, suggesting a dependence on cell projected area. We examined nucleus rotation and actin distribution with various actin-related drugs. Examination of actin distribution and their elongation rate indicated that actin polymerization plays a role in ACW chirality. In contrast, CW bias was associated with transverse arcs. Using time-lapse microscopy, we found that the transverse arcs swirl CW during retrograde flow, causing the nucleus to commit to the CW-biased rotation. Further study indicates that the binding of myosin IIa and actin at transverse arcs near the dorsal surface of cells is required for CW bias.

ACW chirality can be explained by the right-handed axial spinning of radial fibers during polymerization (Figure 8A; Video 4) (Tee et al., 2015). As actin filament is formed in a right-handed double helix, it possesses an intrinsic chiral nature. During the polymerization of radial fiber, the barbed end capped by formin at focal adhesion was found to recruit new actin monomers to the filament. The tethering by formin during the recruitment of actin monomers contributes to the right-handed tilting of radial fibers, leading to ACW rotation.

Actomyosin dynamics of radial fibers and transverse arcs in contribution to cell chirality.

(A) Schematic showing the radial fiber-generating rightward force. As the barbed ends of the right-handed double helix of an actin filament are capped and tethered by formin, incorporation of new actin monomers to the right-handed double helix causes the actin right-screw motion of radial fibers during polymerization. (B) Schematic of the myosin IIa gliding motion on Tpm4-decorated actin filament. Myosin IIa walks leftward from pointed end to barbed end. The green arrow represents the left-handed direction of the myosin IIa head footprint. (C) Schematic showing a unit of sarcomere-like contraction of myosin IIa and actin filament. During contraction, the actin filaments contract to the pointed end through myosin IIa, with a gliding motion creating left-handed twirling of actin filaments to the pointed end. (D) Schematic of transverse arcs producing CW swirling. Transverse arcs are located immediately beneath the cell membrane, away from the substrate. With respect to the cell surface, the contraction of the sarcomere-like unit in the transverse arcs gives rise to tilting. The green arrow demonstrates the rotational force of the sarcomere-like unit in the transverse arc. (E) When radial fiber is dominant, radial fibers with right-screw motion tilt rightward, accompanying retrograde flow along the growing direction of radial fibers and eventually driving an overall ACW rotation of the entire cytoskeleton around the cell nucleus. (F) When transverse arcs are dominant, the tilting of transverse arc precursors causes a CW swirling of transverse arcs that approaches the nucleus during retrograde flow, eventually causing CW rotational wrapping around the nucleus.

Our results suggest that the chiral structure of the transverse arc could be responsible for CW-swirling. The actomyosin complex in fibroblasts is arranged in a sarcomere-like structure consisting of actin and non-muscle myosin IIa. The motor domain of myosin IIa consists of two heads that can bind to the myosin-binding site on an actin filament. Importantly, during contraction, the myosin IIa molecule progresses in a left-ward “walking” motion towards the barbed end on the myosin-binding site of the actin filament (Beausang et al., 2008; Kovács et al., 2007), covering around 10-11 nm in each step (Figure 8B) (Veigel et al., 1998). In addition, the arrangement of myosin IIa filament is assembled by the tail domain (Melli et al., 2018), forming a myosin IIa bipolar filament in parallel to the actin filaments in the sarcomere-like actomyosin structure (Hu et al., 2017). As a result, the stepwise walking of myosin IIa, which is tethered by the bundled tail, could plausibly drive a left-handed twirling of the actin filaments towards the C-terminal (Figure 8C; Video 8). Thus, the contraction based on left-handed-walking myosin II on actin filaments could serve as a chiral motor with torque dipole. Previous studies indicate that, when near an interface, the frictional force due to relative motion between the torque dipole and the surface, such as the cell cortex, could lead to chiral processes of the cytoskeleton (Furthauer et al., 2013). Here, we have consistently identified that transverse arcs are part of the actin filament network near the dorsal surface of cells. Thus, the contractile sarcomere-like unit may also act as a torque dipole that “rolls” against the plasma membrane, eventually leading the transverse arcs to tilt and swirl in a CW direction (Figure 8D, Video 9).

We propose that the imbalance between radial fibers and transverse arcs could control the reversal of chirality at the cell level. When radial fibers are dominant, radial fibers with right-screw motion would tilt rightward, accompanied with retrograde flow to establish an overall ACW rotation of cells (Figure 8E). In contrast, when the transverse arcs are dominant, the chiral processes of torque dipoles of the transverse arcs would swirl in CW, causing an overall CW rotation (Figure 8F). The transmission of chirality from the transverse arcs or the radial fibers to nucleus positioning can be regulated by Transmembrane Actin-Associated Nuclear (TAN) Lines and perinuclear actin caps (Davidson and Cadot, 2021), with TAN lines related to retrograde growth and actin caps connected to dorsal or ventral fibers (Luxton et al., 2010).

Notably, our proposed mechanism can be a universal, cell-type independent model. In previous results regarding cell alignment (Wan et al., 2011), the chirality of C2C12 and hMSCs showed opposite, cell-type dependent chirality. In contrast, we found that C2C12 and hMSCs exhibited similar, cell-type independent chiral reversal. Such a difference can be explained by the cell spreading area when attached to a fibronectin surface in cell culture by staining cell tracker (Discussion—figure supplement 1). With different spreading sizes for HFF-1 (2294.55 ±976.5737 μm2), C2C12 (860.8984 ±352.624 μm2), and hMSCs (4026.123 ±1828.682 μm2), the opposite chirality observed previously may simply be due to the cell spreading area on fibronectin coated surfaces falling in the range of CW rotation (C2C12) or ACW rotation (HFF-1 and hMSCs).

In summary, using nucleus rotation, our results indicate the main drivers for chirality, ACW chirality originates from the right-handed axial spinning growth of radial fiber, while CW chirality is driven by the retrograde flow of transverse arcs with CW swirling. An imbalance between these two classes of actin fibers through adjustment of cell spreading area or regulation of the main components of actin fibers (myosin II, α-actinin-1, mDia2, or Tpm4), cell chirality can be reversed. This finding provides a general mechanism of chirality reversal, which has broad implications applicable to different cell types and understanding of tissue morphogenesis.

Methods and Materials

Actin height Cell culture

HFF-1 human foreskin fibroblasts (SCRC-1041™, ATCC) were cultured in Dulbecco’s Modified Eagle Medium (4 mM L-glutamine, 4500 mg/L glucose, 1 mM sodium pyruvate and 1.5 g/L sodium bicarbonate, Life Technologies) supplemented with 15% fetal bovine serum and 1% penicillin–streptomycin (Life Technologies). Only cell passages from 2 to 10 were used for the experiment. C2C12 mouse myoblasts (CRL-1772™, ATCC) were thawed in P8 and used at P9. They were cultured in Dulbecco’s Modified Eagle’s Medium (4 mM L-glutamine, 4500 mg/L glucose and 3.7 g/L sodium bicarbonate, Life Technologies) and supplemented with 10% fetal bovine serum and 1% penicillin–streptomycin (Life Technologies). Human mesenchymal stem cells (hMSCs, PT-2501, Lonza) were also cultured in Dulbecco’s Modified Eagle’s Medium (Life Technologies) and supplemented with 10% fetal bovine serum and 1% penicillin– streptomycin (Life Technologies).

Nucleus rotation on culture dish

After confluence, the nuclei of HFF-1 cells were stained by applying 2 μg/ml H33342 trihydrochloride (Sigma-Aldrich) in medium for 30 min. Cells were suspended and reseeded onto a culture dish at a density of 5000 cells per cm2 and incubated in an incubator at 37 °C for 15 min for cell attachment. After removing the non-attached cells and replenishing with fresh medium, the dish was placed in a live cell incubator on a microscope stage (ChamlideTM TC incubator system, Live Cell Instrument) with 100% humidity and 5% CO2 in 37˚C. To record nuclei rotation, fluorescence images of the nuclei and phase contrast images were acquired with an Nikon Eclipse Ti-E microscope at 5 min interval for 4 h. Cell tracking and labeling was performed based on the shortest displacement by comparing the locational information of each cell at the current image and previous time interval, as shown by the trajectory of cell location for 4 h following cell attachment to the culture dish (Figure 1B). Automated image segmentation was used to measure the angular velocity of nuclei. In brief, after image binarization, the contour of the cell nuclei was fit by an oval shape to identify its long axis. By calculating the transient angular velocity of the long axis within the time interval, angular velocity was calculated by the angle difference of the nucleus at two consecutive images, which gives the transient angular velocity of each cell of each 5 min interval for the total 4 hour and 30 min time period. By grouping measurement of all cells every 20 min, the probability of ACW or CW rotation was determined. Then, the difference between the ACW/CW percentages was compared based on the projection area and circularity, which was calculated based on cells measured in the Nikon NIS-Elements.

Micropatterning

Photolithography was used to accomplish a series of cell adherent islands with various sizes. Glass slides were treated with piranha solution (sulfuric acid to hydrogen peroxide = 3:1, 100˚C) for one hour. After rinsing and drying, the slides were treated with hexamethyldislazane (HMDS, Sigma- Aldrich) coating in a vapor phase for 5 min. AZ5214 photoresist (AZ Electronic Materials, Luxembourg) was spin-coated on substrates at 3000 rpm and baked at 95 °C for 2 min. The photoresist then underwent UV exposure and was developed using developer (AZ400k: deionized water 1:3) to imprint the desired pattern, followed by plasma treatment to remove the remaining photoresist on the pattern (800 mTorr at 30W). Next, the pattern was coated with fibronectin solution (20 μg/ml, Life Technology) for one hour. Afterward, the remaining photoresist was removed by rinsing in absolute ethanol three times, for 5 min each; substrates were then dried before use. Finally, the substrates were treated with 1% Pluronic F127 for 50 min before cell seeding.

Nucleus rotation on micropatterns with circular or other shapes

HFF-1 fibroblasts and C2C12 myoblasts were seeded at a density of 4000 cells/cm2 on circular patterned glass with different sizes ranging from 500 to 2500 μm2, while hMSCs were seeded at a density of 1000-2000 cells/cm2 on pattern sizes ranging from 1000 to 5000 μm2. For micropatterns with other shapes, HFF-1 fibroblasts were seeded at a density of 4000 cells/cm2 on equilateral triangle, square or rectangle micropattern of size 750 or 2500 μm2. After incubation for 30 min, cells were replenished with fresh growth medium for 3 h. Cells were treated with 2 μg/mL bisBenzimide H33342 trihydrochloride (Sigma-Aldrich) for 30 min and imaged by Nikon Eclipse Ti-E microscope at every 10 min interval for 2–3 h. The automated image segmentation was used for measuring the nucleus rotation as mentioned previously. The percentages of ACW or CW transient rotation of each cell was determined within the entire duration and averaged among many cells.

Drug treatment

To examine the role of actin in nucleus rotation, cells were treated with 50 nM of Latrunculin A (Sigma-Aldrich), 100 μM of NSC23766 (Sigma-Aldrich), 5 μM of SMIFH2 (Sigma-Aldrich), 2 μM of A23187 (J&K Scientific), 1 μM Lysophosphatidic acid (Sigma-Aldrich), or 10 μM Y27632 (Alexis).

Analysis of fiber orientation on circular pattern

The quantitative analysis of actin fiber orientation was carried out in Matlab as described in previous studies (Bao et al., 2020). In brief, an adaptive threshold and Gaussian filter was applied to cropped actin images to generate a binarized image of actin. The central region of actin was removed to highlight the radial fibers and transverse arcs. The core skeleton of actin filament was then obtained by removing lines shorter than 8 pixels. The skeleton was classified as a straight line (the aspect ratio of surrounding ellipse of the line being greater than 4) or a curved line. For straight skeletons, orientation was obtained through the acute angle difference between the long axis of ellipse and the tangential direction to the center. For curved skeletons, the orientation was calculated according to the pixel location on the curved line, determined by the 3-point spline method and the tangential line to the center. Orientation of actin was defined as ACW when orientated from 0° to 90° and CW when orientated from -90° to 0°.

Enucleation of cell

Enucleated HFF-1 cells were prepared according to method stated in the literature (Degaetano and Schindler, 1987). Cells were plated on glass with fibronectin coating a night before the procedure. The glass was then placed into a 50 ml falcon tube with medium supplemented with 2 μg/ml of Cytochalasin D (Sigma-Aldrich). The falcon tube was then centrifuged at 10500 × g at 37 °C for one hour with an Eppendorf 5804R to enucleate cells. Cells were then replenished with fresh medium for recovery. The cells were then trypsinized and reseeded on a circular pattern for 6 hours before fixing. The fixed samples were stained with phalloidin and DAPI to observe the actin structure of enucleated cells.

Plasmid transfection

HFF-1 fibroblasts were seeded one night before the transfection (100,000 cells in a 35 mm dish). We used DNA plasmids, actin-GFP (a gift from Michael Davidson, Addgene plasmid # 56421), mRuby-Lifeact (a gift from Dr. Cheng-Han Yu of the University of Hong Kong), pCDNA_Lifeact-GFP_NLS-mCherry (Lifeact-GFP) (a gift from Olivier Pertz, Addgene plasmid # 69058), pEFmEGFP-mDia2 (a gift from Arthur Alberts, Addgene plasmid # 25407) and pEGFP-N1 alpha-actinin 1 (a gift from Carol Otey, Addgene plasmid # 11908). The OPTIMEM medium (ThermoFisher) and Lipofectamine 3000 Assay (ThermoFisher) were used for transfection. According to manufacturers’ suggestions, 500 ng of DNA plasmid was placed in OPTIMEM medium. Following the addition of P3000 Reagent and Lipofectamine 3000 Reagent, the mixture was incubated for 30 min to form lipofectamine complex before being applied to cells. Cells were then incubated with transfection mixture overnight, followed by replenishment with fresh medium for recovery. Next, the transfected cells were reseeded on a micropatterned surface at a density of 4,000 cells/cm2. After incubation for 30 min for the cell to spread fully, fresh medium was replenished before imaging.

Optical flow analysis

We used Matlab’s built-in Optical Flow function to estimate the actin flow direction in LatA-treated cells. We used the Farneback method to estimate the motion vectors of every pixel through the comparison of consecutive frames of the video sequence. The sum motion vector of each pixel (Vx(sum), Vy(sum)) was calculated by adding the motion vectors with time (Vx(t,t+1,t+2,…), Vy(t,t+1,t+2,…)). The motion direction of each pixel was found by comparing the angle difference between the sum motion vector and the vector of the pixel’s location pointed towards the cell center.

Gene silencing

Invitrogen Silencer® Pre-designed siRNA was used to deplete Tropomyosins, Tpm1 (AM51331), Tpm2 (AM51331), Tpm3 (AM16708), Tpm4 (AM16708), and mDia2 (AM16708) (table S1). Transfection on HFF-1 was based on the Lipofectamine 3000 Reagent procedure, as mentioned above, with a final concentration of siRNA at 75 nM. After 24 h of transfection, fresh medium was replenished, and the experiment (nucleus rotation and fluorescence imaging) was performed on day 3 after the addition of transfection complex. Next, cells were treated with 2 μg/mL bisBenzimide H33342 trihydrochloride for 30 min before seeding on micropatterned circular islands. Incubation was done for 30 min for the cells to spread fully and fresh medium was replenished before imaging.

Fluorescent staining

HFF-1 fibroblasts were seeded on circular islands with sizes of 750 μm2 and 2500 μm2 at densities of 4,000 cells/cm2 for 30 min. Next, they were replenished with growth medium for 6 h. The cell was then treated with 4% paraformaldehyde (PFA) for 15 min, 0.2% Triton X-100 for 10 min, and Image-iTTM FX (ThermoFisher) signal enhancer for 30 min. Next, depending on the staining target, the cells were applied with Rhodamine Phalloidin (1/40, Life Technology) for one hour, rabbit anti-mDia2 antibodies (1/100, Life Technology), rabbit anti-myosin IIa antibodies (1/100, Cell Signaling), or rabbit anti-Tpm4 antibodies (1/100, Abcam) overnight, followed by application of secondary anti-rabbit antibodies (1/250, Life Technology) for one hour and DAPI staining (300 nM, ThermoFisher) for 5 min. It was then mounted with Fluoromount G (Electron Microscopy Sciences. Inc.) and imaged with a Nikon Eclipse Ti-E microscope. For heatmap distribution of actin, individual images were stacked and averaged in Matlab, with reference to the centroids of circular islands, and scaled based on the maximum/minimum intensity of the image. For differential heatmaps, the intensity differences were calculated by subtraction between treated and untreated cases and scaled based on the maximum/minimum intensity difference of the image.

Photobleaching

FRAP experiments were performed using confocal microscope (Zeiss Laser Scanning Microscope LSM 880 NLO with Airyscan). The horseshoe-shaped region of interest (ROI) of the bleaching area was manually drawn. Two successive images of cell were captured prior to photobleaching, using 100% laser power for 40 s, followed by a 380 s recording of the image sequence of the cell with 10 s time interval. For measurement by photobleaching of radial fiber polymerization and transverse arc translocation velocity, kymographs were performed using an ImageJ plugin to visualize and quantify the movement.

Median intensity analysis

Immunofluorescence imaging of myosin IIa was used to analyze median intensity. The image exhibited a bimodal distribution of pixel intensity, in which the first mode represents the background intensity, and the second mode reflects the myosin IIa expression. The mean intensity of the entire image, which appears in between the two modes, was used as the cut-off intensity to extract the second mode. The second mode was then scanned and the median intensity of the second mode, normalized by the aforementioned cut-off intensity, was then used to represent the myosin IIa expression level. A higher median value indicates a greater intensity of myosin IIa, which suggests more activated myosin IIa.

Pearson’s R-value

Fluorescence imaging of myosin IIa and phalloidin was used to analyze the Pearson’s R-value. The calculation was carried out using ImageJ with Fuji, the plugin Coloc 2 function. The cell spread on the circular pattern was selected as the region of interest, and the analysis was based on pixel-correlation, which resulted from intensity. The intensity values of the pixels in two images were compared to the corresponding pixel. The Pearson’s R-value is calculated by the covariance between two sets of intensity, divided by the product of the standard deviations.

Lifeact-GFP- or Lifeact-mRuby-transfected Hff-1 cell imaging

Lifeact-GFP-transfected control cells were observed with a Leica SP-8 Confocal Laser Scanning Microscope. A live cell incubation chamber (Leica iRBE) was supplied by Life Imaging Services, with an air heater and CO2 control. Images were taken at 3 min intervals for 2.25 hours with a 63X oil lens.

Lifeact-mRuby-transfected cells were observed with a Nikon Eclipse Ti2-E microscope with a spinning disk confocal illuminator (LDI-7 Laser Diode Illuminator, 89 North). Images were taken with a 60X oil lens.

Lifeact-GFP-transfected cells treated with LatA were observed with a Nikon Eclipse Ti-E microscope with fluorescent light illuminator. Images were taken with a 40X oil lens.

Western blotting

For gene silencing validation, 75 nM siRNA was transfected for 24 hours and recovered for 48 hours before cell lysis. Proteins were first separated by 4–12 % SDS polyacrylamide gel (ThermoFisher) electrophoresis and transferred to a PVDF membrane (ThermoFisher). The membrane was blocked for one hour before incubation in primary antibodies at 4 °C overnight with the following dilution: GAPDH (1/1000, Cell Signaling), Tpm4 (1/800, Merck), and Diaph3 (1/1000, Abcam). This was followed by HRP-conjugated secondary antibodies (1/2000, Cell Signaling) for one hour at room temperature. Protein expression was detected with Pierce ECL Western Blotting Substrate (ThermoFisher) and the BIO-RAD ChemiDoc MP Imaging System.

Height profile of actin and myosin IIa

In confocal microscopy for the fluorescence image, z-stacks of phalloidin staining of F-actin and immunofluorescence staining of myosin IIa were acquired with a Leica SP-8 Confocal Laser Scanning Microscope with a 63X oil lens and with Leica SP8 LIGHTNING. With a zoom-in function of 2–7 times, the z-stacked image was taken with a step-size of 0.05 to 0.1 μm during the image acquisitions.

Statistical Analysis

Student’s t-test was applied to evaluate statistical difference. The confidence level was set to 0.05 for all statistical tests. Statistical significance is symbolized by ns (p > 0.05), * (p ≤ 0.05), ** (p value ≤ 0.01), *** (p value ≤ 0.001), or **** (p value ≤ 0.0001).

Acknowledgements

We thank the Department of Infectious Diseases and Public Health, City University of Hong Kong, and Chinetek Scientific for sharing the Nikon Eclipse Ti2-E microscope with a spinning disk confocal illuminator (LDI-7 Laser Diode Illuminator, 89 North) and for the technical support. This study was supported by the following: Hong Kong Research Grant Council (11217820 and N_CityU119/19), Innovation and Technology Commission (ITS/098/20), The Science, Technology, and Innovation Commission of Shenzhen Municipality (JCYJ20210324134006017), and the City University of Hong Kong (9678242 and 6430620).

Author contributions

Hoi Kwan Kwong, Conceptualization, Methodology, Data curation, Investigation, Writing—original draft, Writing—review and editing; Miu Ling Lam, Supervision, Funding acquisition, Writing—review and editing; Siying Wu, Cho Fan Chung, Jianpeng Wu, Data curation; Lok Ting Chu, King Hoo Lim, Methodology; Hiu Lam Chow, Visualization; Hogi Hartanto, Writing—review and editing; Wengang Liu, Data curation; Kwan Ting Chow, Supervision, Methodology; Ting-Hsuan Chen, Conceptualization, Supervision, Methodology, Data curation, Investigation, Funding acquisition, Writing—original draft, Writing—review and editing.

Supplementary Files

Supplementary Figures

Nucleus rotation on micro-islands with varied areas and shapes.

(A-B) Phase contrast images of cells and the probability of ACW/CW rotation with areas of 750 μm2 (A) and 2500 μm2 (B). The pattern shapes used are equilateral triangle (circularity = 0.605), square (circularity = 0.785), and 1:3 rectangle (circularity = 0.589). Data presents the mean + SEM. Two-sample equal variance two-tailed t-test was used. Scale bar, 20 μm.

Actin orientation analysis of HFF-1 cell.

Fluorescent staining of DAPI-stained nucleus (blue) and F-actin (white) by phalloidin on a 2500 μm2 micro-pattern. Orientation analysis of actin filament on 2500 μm2 island. Mean + SEM. Two-sample equal variance two-tailed t-test.

Immunofluorescent image of actin distribution of untreated control and enucleated cell on an island with an area of 2500 μm2.

Scale Bar: 20 μm.

Rotational bias of cell nucleus and actin distribution with actin-related inhibitors on HFF-1.

(A-B) Probability of ACW/CW rotation on 2500 μm2 (A) and 750 μm2 (B) islands with cytoskeleton inhibitors NSC (left), SIMFH2 (middle) and LPA (right). Data present the mean + SEM. Two-sample, equal variance two-tailed t-test was used. (C-D) Stacked images of actin showing heatmap distribution (upper) and intensity difference (lower) of actin comparing cells treated with NSC (left) and SMIFH2 (right) to untreated control on (C) 2500 μm2 and (D) 750 μm2 islands. (E-F) Curves of actin intensity from cell center to boundary (left) and differential actin intensity (right) comparing cells treated with NSC and SMIFH2 to untreated control on (E) 2500 μm2 and (F) 750 μm2 island.

Transverse arcs crosslinking protein overexpression.

(A) Transfection of α-actinin-1-GFP showing α-actinin-1 distribution. Scale Bar: 20 μm. (B) Probability of ACW/CW rotation with increscent fluorescence intensity.

Immunofluorescence staining of actin and Tpm4 when spread on a 2500 μm2 pattern.

Scale bar: 20 μm.

Nucleus rotation with different tropomyosin siRNA transfection.

(A-C) Probability of nucleus rotational bias on 2500 μm2 (upper) and 750 μm2 (lower) with gene silencing in tropomyosin isoform, Tpm1 (A), Tpm2 (B) and Tpm3 (C). Data present the mean + SEM. Two-sample equal variance two-tailed t-test was used.

Actin structure by z-stack of confocal microscopy.

(A) Maximum projection of DAPI-stained nucleus (blue) and phalloidin-stained F-actin (red). (B) Maximum projection of DAPI-stained nucleus (blue) and phalloidin image at 2.35 μm from the bottom of the z-stacked microscopy. The merged image of phalloidin and DAPI shows transverse arcs are present on top of the nucleus with conjunction to a perinuclear actin cap. Scale bar: 20 μm.

Natural spreading size of cell.

(A) Cell culture staining with cell tracker (green) and DAPI (blue) (upper) and the binarized area of cell (lower). Scale bar, 200 μm. (B) The projected area measurement of HFF-1 (2294.55 ± 93.1125 μm2, n = 110), C2C12 (860.8984 ± 26.7324 μm2, n = 175) and hMSCs (4026.123 ± 172.0287 μm2, n = 113). Data presents the mean + SEM.

Video legends

HFF-1 fibroblasts phase contrast and nuclei rotation on culture dish.HFF-1 fibroblasts plated on a cell culture dish with H33342 staining, showing the spreading and nucleus movement during the attachment. Time interval: 5 min; Total duration: 240 min. Frame rate of movie: 15 fps. Scale bar: 100 μm.

HFF-1 fibroblasts transfected with Lifeact-GFP on 2500 μm2, showing rightward tilting of growing radial fibers, which eventually drive an overall ACW rotation of the entire cytoskeleton around the cell nucleus.The images were acquired by 63X oil lens with a Leica SP-8 Confocal Laser Scanning Microscope. Time interval: 3 min; Total duration: 200 min; Frame rate of movie: 10 fps. Scale bar: 20 μm.

HFF-1 fibroblasts transfected with Lifeact-mRuby for actin and stained with H33342 to visualize the nucleus on 750 μm2, demonstrating the retrograde flow of transverse arcs without apparent radial fibers.The images were acquired by 60X oil lens with Nikon Eclipse Ti2-E microscope with a laser spinning disk confocal illuminator. To visualize layers of actin, the maximum intensity projection in Nikon Element was used after taking z-stack images with a step-size of 0.8 μm, for a total height of 3.5 μm. Time interval: 2 min; Total duration: 240 min; Frame rate of final movie: 15 fps.

Animation showing incorporation of new actin monomers to the right-handed double helix.This causes right-handed axial spinning, as the barbed ends of an actin filament are capped and tethered by formin.

LatA-treated HFF-1 fibroblasts transfected with Lifeact-mRuby for actin and stained with H33342 to visualize the nucleus on 2500 μm2, demonstrating CW swirling of transverse arcs that approach the nucleus during retrograde flow, eventually causing CW rotational wrapping around the nucleus.The images were acquired by 60X oil lens with Nikon Eclipse Ti2-E microscope with a laser spinning disk confocal illuminator at a time interval of 1 min and total duration of 36 min. Frame rate of movie: 10 fps. Scale bar: 20 μm.

LatA-treated HFF-1 fibroblasts transfected with Lifeact-GFP actin and stained with H33342 to visualize the nucleus on 2500 μm2, showing that CW-bias of nucleus rotation occurs with CW-bias swirling/wrapping of transverse arcs without distinct radial fibers.The images were acquired by 40X oil lens with Nikon Eclipse Ti-E microscope with a fluorescent light illuminator with time interval of 3 min and total duration of 200 min. Frame rate of movie: 15 fps. Scale bar: 20 μm.

Fixed Tpm4 silenced HFF-1 fibroblasts with F-actin stained with phalloidin on 2500 μm2 pattern.The image was taken with a 63X oil lens using Leica SP-8 Confocal Laser Scanning Microscope. Actin was acquired with z direction. Height interval: 0.05 μm. Total height: 3.6 μm. Frame rate of movie: 10 fps. Scale bar: 20 μm.

Myosin glides on actin filament in left-handed motion.Animation showing how the myosin, as a left-handed motor, glides on a double helix actin structure through stepwise walking from the pointed end toward the barbed end of the actin filament. The myosin IIa and actin filaments are arranged in a sarcomere-like structure, which causes the actin filaments that are attached to parallel and antiparallel myosin subunits to rotate in opposite directions.

Myosin II acts on radial fibers and myosin-rich transverse arcs.Animation showing the intrinsic tilting of the transverse arcs. With respect to the cell surface, the contraction of the sarcomere-like units in the transverse arcs gives rise to leftward tilting.