Sequence and structure conservation of the icilin binding pocket in TRPM and TRPA channels
A) Structure-based sequence alignment of S1-S4 peripheral domains and TRP helix of selected TRP channel structures, with residues contributing to the icilin binding pocket in TRPM8 structures (7wre and 6nr3) highlighted in blue. The equivalent residues in other channels are colored according to the alignment quality score calculated from multiple sequence alignments, where highly conserved residues are color blue and poorly conserved residues are colored in white. Alignment quality score calculated in Jalview based on BLOSUM 62 scores (Henikoff and Henikoff 1992). Teal asterisks indicate Ca2+ coordinating residues in structures of TRPM channels. Black asterisks indicated Ca2+ coordinating residues in TRPA1. Red asterisks indicated residues where mutation influence cooling agent sensitivity in TRPM8. Gold asterisks indicate residues mutated in the present study. B) Chemical structure of icilin. C) S1-S4 residues contributing to the icilin binding pocket in TRPM8 structures (7wre and 6nr3) are shown as blue licorice, viewed from the intracellular side of the membrane as in Figure 1C, with the TRP box omitted for clarity. Cooling agent binding pocket mutations used in the present study are shown with carbon atoms colored gold and labeled in TRPM8 and TRPM4, and the equivalent residues in other channels are colored based on the alignment quality score, as in panel A. 7wre is mTRPM8, 6nr3 is faTRPM8 containing the A805G mutation, 6co7 is Nematostella vectensis TRPM2, 8ddr is mTRPM3, 6bqv is hTRPM4 and 7mbq is zebra fish TRPM5. Sequence identity between residues within the icilin binding pocket of TRPM8 and corresponding residues in the other TRP channel is as follows: TRPM5 (94%), TRPM4 (89%), TRPM2 (78%), TRPM3 and TRPM7 (44%), TRPA1 (22%), TRPV3 (11%).