(A) Representative FACS plot showing IL7RαhiCcr6+ staining of peripheral LN cells from a Cxcr6GFP/+ mouse, and Cxcr6-GFP intensity on the gated cells. (B) Representative FACS plots showing CD3ε, …
(A) Representative FACS plots showing frequency of IL7RαhiCcr6+ and Vγ4+Ccr6+ cells in LNs and blood. Graphs show summary data for more than 30 mice of each type. (B) FACS analysis of LN IL7RαhiCcr6+…
(A) Time series of Cxcr6GFP/+ cell movement with respect to CD169+ SCS macrophages. Upper panels: white arrow indicates a Cxcr6GFP/+ lymphocyte in the LN parenchyma that crosses into the SCS. 300 s …
Green, Cxcr6-GFP+ lymphocytes; Red, CD11b+ macrophages. 5 min~30 min tracks for Cxcr6-GFP+ lymphocytes are shown in colored lines. LN, Lymph node.
(A) Ccl20 mRNA abundance in sorted LN lymphatic endothelial cells (LEC), blood endothelial cells (BEC), fibroblastic reticular cells (FRC) and double negative stromal cells (DN) determined by …
Serial sections were stained with anti-CCL20 (A) or without primary antibody (B, C) (red) and anti-B220 (blue). The arrows in A point to staining in the SCS region adjacent to B cell follicles. The …
Cxcr6GFP/+ mice were injected s.c. with saline (A) or CCL20 (B) and 1 hr later inguinal LN sections were stained to detect Cxcr6-GFP (green), and Lyve1 (blue). LN, Lymph node.
Inguinal LN sections from Ccr6GFP/+ (A) and Ccr6GFP/GFP (Ccr6-deficient) (B) mice were stained to detect GFP (green) and B220 (blue). (C) GFP+B220– cells were counted manually and percentage of …
Inguinal LN sections from control (Ccr6+/–) (A) and Ccr6–/– (Ccr6 deficient) (B) mice were stained to detect Scart2 (green) and B220 (blue). (C) Scart2+ cells were counted manually and percentage of …
(A) S1pr1 surface expression on IL7RαhiCcr6+ and Vγ4+Ccr6+ cells from control or FTY720 treated mice. Negative indicates samples stained with no primary antibody. (B) Transwell migration assay …
Mice were treated i.v. with saline (A) or FTY720 (B) and 6 hr later inguinal LN sections were stained to detect Scart2 (green) and Lyve1 (blue). SCS and medulla indicate subcapsular sinus area and …
Each individual cell’s location was determined using the Spots tool in Imaris. The depth, or minimum distance from the cell’s center as a Surface object created in Imaris to the capsule, was …
(A) Representative FACS histogram showing LFA1 staining of IL7RαhiCcr6+, Vγ4+Ccr6+ and naïve αβ T cells. (B) ICAM1 staining of WT and ICAM1 KO LN sections. (C) Adhesion of IL7RαhiCcr6+, Vγ4+Ccr6+ …
(A) Frequency of IL7RαhiCcr6+ and Vγ4+Ccr6+ LN cells 6 hr after treatment with saline or αL blocking antibody. (B) Number of IL7RαhiCcr6+ cells in peripheral LNs and blood 3 days after treatment …
(A) CD169-Fc binding of innate-like lymphocytes. (B) Effect of CD169-deficiency or blocking antibody treatment on macrophage bleb acquisition by IL7RαhiCcr6+ cells. Cells were stained to detect the …
(A) CD169 CD11b costaining of IL7RαhiCcr6+ cells from control and CD169-deficient LNs. (B) Frequency and Thy1-PE labeling of IL7RαhiCcr6+ and Vγ4+Ccr6+ LN cells in control and CD169-deficient mice. …
(A) Diagram of skin draining LN. (B) Model showing effect of Ccr6-deficiency on innate-like lymphocyte positioning and associated defect in ability to upregulate IL17 in response to IL1-family …
Representative intravital time-lapse imaging of the popliteal LNs from two Cxcr6GFP/+ mice. Overhead 3D video exemplifies the dynamic movement of Cxcr6-GFP+ cells (green) within the LN. …
Intravital time-lapse imaging of the popliteal LN from a Cxcr6GFP/+ control mouse, highlighting one cell crossing from the parenchyma into the SCS, and one crossing from the SCS into the parenchyma. …
One hour time-lapse imaging of a popliteal LN in a Cxcr6GFP/+ mouse 16 hr after treatment with FTY720. Cxcr6-GFP+ cells (green) can be seen accumulated on the parenchymal side of the SCS macrophages …
In Cxcr6GFP/+ mice, four hours after treatment with αL blocking antibody, Cxcr6-GFP+ cells (green) are observed to flutter at the floor of the SCS. Cxcr6-GFP+ cells appear attached to CD11b+ SCS …
Representative time-lapse images of Cxcr6GFP/+ mice 4 hr after treatment with CD169 blocking antibody, as well as Cxcr6GFP/+ CD169–/– mice. In both conditions, there appeared to be an increased …
Decreased numbers of Cxcr6-GFP+ cells (green) are observed in the SCS and LN parenchyma following dual antibody blockade of αL and CD169. Time-lapse imaging in a Cxcr6GFP/+ mouse beginning 4 hr post …
Representative time-lapse imaging beginning 5 min after treatment with CD169 blocking antibody in Cxcr6GFP/+ mice pretreated 4 hr before with αL blocking antibody. Upon addition of CD169 blockade, …
Matlab and R source code files used for computational analysis.
Three files are enclosed with the Matlab and R code used for the compuational analysis in the present paper: 1) spotsMinDistanceToSurface.m - Matlab File encoding an ImarisXT extension that can be used to find the minimum distance between a spot object and a surface object (used in the present paper to find the minimum distance between cells and the lymph node capsule); 2) SCSAnalyzeR_Core.R - R script containing code to import raw Imaris track lists (including depth statistic added by spotsMinDistanceToSurface.m), preform data processing, and create the plots displayed in the main and supplementary figures; 3) SCSAnalyzeR_Core_Functions.R - R script containing functions called by the main SCSAnalyzeR_Core.R script