(A) DLK deletion is protective in the von Frey behavior assay following SNI at 1, 2, 3 and 4 weeks post injury (wpi). Baseline (BL) mechanical sensitivity thresholds are comparable between DLK WT (n …
data plotted in Figure 1A; von Frey behavior testing in DLK WT and cKO mice.
data plotted in Figure 1E; p-cJun-positive nuclear counts in ipsilateral L4 DRG 7 days after SNI in DLK WT vs cKO mice.
data plotted in Figure 1H; ATF3-positive nuclear counts in ipsilateral L4 DRG 7 days after SNI in DLK WT vs cKO mice.
data plotted in Figure 1—figure supplement 1; dynamic brush scores 7 weeks after SNI in DLK WT vs cKO mice.
data plotted in Figure 1—figure supplement 2; von Frey testing in DLK WT vs cKO mice at 1, 3, 5 and 7 days post SNI.
data plotted in Figure 1E; p-cJun-positive nuclear counts in ipsilateral L4 DRG 48 hr after hind paw formalin injection in DLK WT vs cKO mice.
data plotted in Figure 1E; ATF3-positive nuclear counts in ipsilateral L4 DRG 48 hr after hind paw formalin injection in DLK WT vs cKO mice.
Dynamic brush testing at 7 weeks post injury showing that DLK cKO mice display less nocifensive and protective behaviors compared with DLK WT littermates (n = 6 per genotype group; 3 males and three …
Von Frey testing at acute time points 1, 3, 5, and 7 days post injury (dpi) in DLK cKO (n = 11, 5 females and 6 males) and DLK WT littermates (n = 12, 6 per sex). DLK deletion is protective in the …
(A–C) Example images of co-immunostaining for p-c-Jun (injury marker) and NeuN (all neuronal nuclei) in a wild type DRG to illustrate the % NeuN-positive neuron counts that were done for the data …
Representative images and quantification of expression of 4 genes whose expression changes following sciatic nerve axotomy: Atf3 (A–C), Gal (D–F), Npy (G–I), and Serpina3n (J–L) by in situ …
data plotted in Figure 2; quantification of in situ hybridization for Atf3, Gal, Npy and Serpina3n in DLK WT vs cKO in ipsilateral L4 DRG 7 days post SNI.
data plotted in Figure 2—figure supplement 1; quantification of in situ hybridization for Cckbr, Ecel1, Gpr151, Nts, Sox11, and Sprr1a in DLK WT vs cKO in ipsilateral L4 DRG 7 days post SNI.
(A–R) Representative images and quantification of expression of 6 genes whose expression changes following sciatic nerve axotomy: Cckbr (A–C), Ecel1 (D–F), Gpr151 (G–I), Nts (J–L), Sox11 (M–O), Sprr1…
(A–C) Representative images and quantification of Csf1 gene expression changes following SNI by in situ hybridization in DLK WT vs DLK cKO L3 DRG 7 days post SNI. Scale bar 100 µm. **p<0.01, by …
data plotted in Figure 3C; quantification of in situ hybridization for Csf1 in DLK WT vs cKO in ipsilateral L4 DRG 7 days post SNI.
data plotted in Figure 3F; quantification of Iba1-positive signal in DLK WT vs cKO dorsal spinal cord ipsilateral to injury at 8 dpi.
data plotted in Figure 3I; quantification of Iba1-positive signal in DLK WT vs cKO dorsal spinal cord contralateral to injury at 8 dpi.
(A–C) Representative images and quantification of gene expression changes in ipsilateral L4 DRGs of WT mice 6, 18, 24, 48 and 72 hr post-SNT (sciatic nerve transection). (A) and (D) Representative …
data plotted in Figure 4B,C and E; quantification of time course of expression of Atf3, Csf1 and Gal in ipsilateral L4 DRGs normalized by total neuronal volume sampled as labeled by Tubb3.
data plotted in Figure 4G; quantification of Iba1-positive volume in dorsal spinal cord ipsilateral to injury at the indicated time points.
DLK cKO samples are provided for comparison.
(A–C) GNE-3511 treatment prevents upregulation of DLK-dependent genes in the DRG after SNI. (A) Representative images of Atf3 (green), Csf1 (orange), and Tubb3 (red) in situ hybridizations in …
data plotted in Figure 5B,C; quantification of in situ signal intensity at 5 dpi for Atf3 and Csf1 in ipsilateral and contralateral L4 DRGs normalized by total neuronal volume sampled as labeled by Tubb3.
data plotted in Figure 5E; von Frey thresholds (>5 responses out of 10 stimulations) in vehicle vs GNE-3511-treated at 7 dpi.
data plotted in Figure 5H; quantification of Iba1-positive signal in vehicle vs GNE-3511-treated dorsal spinal cord ipsilateral to injury at 8 dpi.
Nerve injury activates DLK (Ji and Strichartz, 2004) which induces a transcriptional response in DRG neurons (Basbaum et al., 2009), including Csf1 upregulation (von Hehn et al., 2012) which leads …
Genes are sorted by significance, then by fold change. The genes we examined for DLK-dependence by in situ hybridization are indicated by an asterisk *
Gene | log2 fold_change | |
---|---|---|
1 | Sprr1a * | 6.96879 |
2 | Npy * | 5.89862 |
3 | Gpr151 * | 5.72999 |
4 | Cckbr * | 5.35581 |
5 | Ecel1 * | 4.97284 |
6 | Atf3 * | 4.95333 |
7 | Gal * | 4.77653 |
8 | Nts * | 4.60215 |
9 | Hrk | 4.55133 |
10 | Fst | 4.09785 |
11 | Lmo7 | 3.76662 |
12 | Car3 | 3.48156 |
13 | Sox11 * | 3.37483 |
14 | Sema6a | 3.32589 |
15 | Mmp16 | 3.31338 |
16 | Flrt3 | 3.28661 |
17 | Loxl2 | 3.25419 |
18 | Flnc | 3.21128 |
19 | Sez6l | 3.20287 |
20 | Adam8 | 2.98222 |
21 | Stmn4 | 2.89975 |
22 | Xdh | 2.77339 |
23 | Gadd45a | 2.66746 |
24 | Sdc1 | 2.59248 |
25 | Csf1 * | 2.51895 |
Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
---|---|---|---|---|
Commercial assay/kit- RNAscope | RNAscope Fluorescent Multiplex Detection Reagents | Advanced Cell Diagnostics | ACD:320851 | |
Commercial assay/kit- RNAscope | RNAscope Probe-Mm-Atf3; Atf3 | Advanced Cell Diagnostics | ACD:426891 | |
Commercial assay/kit- RNAscope | RNAscope Probe-Mm-Serpina3n; Serpina3n | Advanced Cell Diagnostics | ACD:430191 | |
Commercial assay/kit- RNAscope | RNAscope Probe-Mm-Csf1; Csf1 | Advanced Cell Diagnostics | ACD:315621 | |
Commercial assay/kit- RNAscope | RNAscope Probe-Mm-Tubb3; Tubb3 | Advanced Cell Diagnostics | ACD:423391 | |
Commercial assay/kit- RNAscope | RNAscope Probe-Mm-Gal; Galanin; Gal | Advanced Cell Diagnostics | ACD:400961 | |
Commercial Assay/kit- RNAscope | RNAscope Probe-Mm-Npy; Npy | Advanced Cell Diagnostics | ACD:313321 | |
Commercial assay/kit- RNAscope | RNAscope Probe-Mm-Cckbr; Cckbr | Advanced Cell Diagnostics | ACD:439121 | |
Commercial assay/kit- RNAscope | RNAscope Probe-Mm-Ecel1; Ecel1 | Advanced Cell Diagnostics | ACD:475331 | |
Commercial assay/kit- RNAscope | RNAscope Probe-Mm-Gpr151; Gpr151 | Advanced Cell Diagnostics | ACD:317321 | |
Commercial assay/kit- RNAscope | RNAscope Probe-Mm-Nts; Nts | Advanced Cell Diagnostics | ACD:420441 | |
Commercial assay/kit- RNAscope | RNAscope Probe-Mm-Sox11; Sox11 | Advanced Cell Diagnostics | ACD:440811 | |
Commercial assay/kit- RNAscope | RNAscope Probe-Mm-Sprr1a; Sprr1a | Advanced Cell Diagnostics | ACD:426871 | |
Antibody | anti-phospho-c-Jun S63 (rabbit polyclonal) | Cell Signaling | Cell Signaling:9261; RRID:AB_2130162 | 1:500 |
Antibody | anti-NeuN (mouse monoclonal) | Millipore | Millipore:MAB377; RRID:AB_2298772 | 1:300 |
Antibody | anti-ATF3 (rabbit polyclonal) | Santa Cruz | Santa Cruz:sc-188; RRID:AB_2258513 | 1:3000 |
Antibody | anti-Iba1 (rabbit polyclonal) | Wako | Wako:019–19741; RRID:AB_2665520 | 1:200; 1:600 |
Antibody | Donkey anti-rabbit AlexaFluor 647 | ThermoFisher | ThermoFisher:A31573; RRID:AB_2536183 | 1:500 for immunostaining; 1:600 for iDisco |
Antibody | Donkey anti-rabbit AlexaFluor 594 | ThermoFisher | ThermoFisher:A21207; RRID:AB_141637 | 1:500 for immunostaining; 1:600 for iDisco |
Antibody | Donkey anti-mouse AlexaFluor 488 | ThermoFisher | ThermoFisher:A21202; RRID:AB_141607 | 1:500 for immunostaining; 1:600 for iDisco |
Strain, strain background (mus musculus) | Inbred strain C57BL/6J (mus musculus) | The Jackson Laboratory | Jax:000664; RRID:IMSR_JAX:000664 | |
Strain, strain background (mus musculus) | STOCK Tg(CAG-cre/Esr1*) 5Amc/J, C57BL/6J (mus musculus) | The Jackson Laboratory | Jax:004453; RRID:IMSR_JAX:004453 | |
Strain, strain background (mus musculus) | Map3k12 flox mouse, C57BL/6J (mus musculus) | Genentech, by MTA; PMID 24166713 | ||
Chemical compound, drug | small molecule GNE-3511 (DLK inhibitor) | Genentech, by MTA; PMID 25341110 | ||
Software, algorithm | FIJI | NIH | RRID:SCR_002285 | |
Software, algorithm | arivis Vision 4D | Arivis |