Additional detailed experimental notes, data, and analysis are available on OSF (RRID:SCR_003238) (https://osf.io/y4tvd/; Eaton et al., 2018). This includes the R Markdown file (https://osf.io/ektn3/) that was used to compose this manuscript, which is a reproducible document linking the results in the article directly to the data and code that produced them (Hartgerink, 2017). The Whole Genome sequencing data generated during this study has been deposited at NCBI SRA under the Bioproject accession PRJNA481682. The genome assemblies has been deposited at Genbank under the accession QVAD00000000 and QVAE00000000.
Replication Study: Intestinal inflammation targets cancer-inducing activity of the microbiotaPublicly available at NCBI BioProject (accession no. PRJNA481682).
Escherichia coli strain NC101-PKS, whole genome shotgun sequencing projectPublicly available at NCBI Nucleotide (accession no. QVAD00000000).
Escherichia coli strain NC101-WT, whole genome shotgun sequencing projectPublicly available at NCBI Nucleotide (accession no. QVAE00000000).
Study 41: Replication of Arthur et al., 2012 (Science).Available at OSF under a CC Attribution 4.0 International Public License.