(a) Gene expression level (RSEM) of glucose transporters in TCGA-LUAD samples (n = 511). (b) Immunohistochemistry (IHC) from a next-generation tissue microarray of human LUAD and LUSC showing score …
Source files for tumor growth, grades and survival of KP and KPG1 mice.
(a) Kaplan-Meier survival analyses of glucose transporters in TCGA-LUAD (n = 448). Samples are split by median expression into high and low groups. p-values were computed with Wald test. (b) Heatmap …
(a) (upper panels) Representative examples of Glut1 staining by immunohistochemistry (IHC) in KP tumors showing weak, intermediate or strong expression. Scale bars: 100 μm. (lower panel) IHC …
Source files for Glut1 protein expression analysis by KP tumor grade.
(a) Experimental setting. (b) Representative examples of a scanning electron microscopy (SEM) images (left), NanoSIMS isotopic image (middle) and their superposition (right) obtained from a KP …
(a) (left) Tumor-derived single cell preparations were placed in a Seahorse XF analyzer and subjected to longitudinal extracellular acidification rate (ECAR) measurements. Glucose or 2-deoxyglucose …
Source files for Seahorse analysis of KP and KPG1 tumors.
(a) Freshly-isolated tumor-derived cells were placed in a Seahorse XF analyzer and subjected to longitudinal extracellular acidification rate (ECAR) measurements. Glucose or 2-deoxyglucose (2-DG) …
Source files for Seahorse analysis of KP and KPG1 tumors.
(a) (left panels) Top 20 Hallmark pathways enriched in genes induced in KPG1 versus KP in SPC-Cre (top left), CC10-Cre (middle left) and PGK-Cre (bottom left). Bar length shows the normalized …
(a) Mouse models and viral vector used for in vivo PPARαΔ13 induction in tumor cells. (b) Western blot from transfected 293T cells’ extracts validating the doxycycline-mediated PPARαΔ13 induction in …
Source files for tumor growth of KP and KPG1 mice, with or without PPARαΔ13 induction.
(a) Representative examples of H&E, Glut1 or Glut3 staining by IHC from serial sections of a KP tumor showing Glut1-3 co-localization. Scale bars: 200 μm. (b) Histogram with mean ± s.d. shows the …
Source files for tumor growth, grades and survival of KP and KPG1G3 mice.
(a) Real time PCR for Slc2a3 on KP (n = 19), KPG1 (n = 32), KL (n = 12) and KLG1 (n = 11) tumors. ns: not significant by Mann-Whitney test; ****: p < 0.0001 by Mann-Whitney test. (b) Representative …
(a) Graph with mean ± s.e.m. shows the fold changes of KP and KPG3 tumor volumes (n = 7, respectively) monitored during 56 days by μCT, starting at 16 weeks post-tumor initiation with tumor volumes …
Source files for tumor growth, Seahorse analysis, survival and grades of KP and KPG3.
(a) Graph with mean ± s.e.m. shows the fold changes of KP and KPG1G3 tumor volumes (n = 32 and 20, respectively) monitored during 28 days by X-rays micro-computed tomography (μCT), starting at 16 …
Source files for tumor growth of KP and KPG1G3 mice.
(a) Dot plots with mean ± s.d. show the relative glucose transporter mRNA expression in CD45 negative fraction from KP and KPG1G3 tumors (Slc2a1 and Slc2a3: n = 8 and 10 tumors, respectively; Slc2a2,…
(a) PCR showing that Calu-6, H460, A549, and SW 1573 were tested negative for mycoplasma. Black arrow indicates the positive band for mycoplasma detection.
(a) Mouse model of acute Glut1 deletion. Flp-frt recombinations upon Flp-recombinase induce KrasG12D activation and Tp53 deletion, driving tumor development. Intraperitoneal injection of tamoxifen …
Gene expression level (RSEM) of glucose transporters in TCGA-LUSC (n = 501) and in TCGA-LUAD samples (n = 515).
Median glucose transporter GLUT1 expression value splits down the patient tumors into low and high GLUT1 expressers. Kaplan-Meier plots show that GLUT1 expression is associated with a poor overall …
(a) Dot plot with mean ± s.d shows percent of pHH3 positive cells per KP or KPG1G3 tumors (n = 4, 6 mice and n = 115, 101 tumors, respectively) at sacrifice. ****: p < 0.0001 by Mann-Whitney test.
(a) Representative serial KPG1 tumor-bearing lung sections stained by immunohistochemistry (IHC) for (upper panel) Glut3 and (lower panel) Pparα. Tumors analyzed for this KPG1 mouse are encircled in …
Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
---|---|---|---|---|
Strain, strain background (M. musculus, male, female) | K | The Jackson Laboratory | RRID:IMSR_JAX:008179 | KrasLSL-G12D/WT Trp53Flox/Flox K and P interbred at EPFL |
Strain, strain background (M. musculus, male, female) | P | The Jackson Laboratory | RRID:IMSR_JAX:008462 | KrasLSL-G12D/WT Trp53Flox/Flox K and P interbred at EPFL |
Strain, strain background (M. musculus, male, female) | KPG1 | Interbred at EPFL | KrasLSL-G12D/WT Trp53Flox/Flox Slc2a1Flox/Flox | |
Strain, strain background (M. musculus, male, female) | KPG3 | Interbred at EPFL | KrasLSL-G12D/WT Trp53Flox/Flox Slc2a3Flox/Flox | |
Strain, strain background (M. musculus, male, female) | KPG1G3 | Interbred at EPFL | KrasLSL-G12D/WT Trp53Flox/Flox Slc2a1Flox/Flox Slc2a3Flox/Flox | |
Strain, strain background (M. musculus, male, female) | KPR | Interbred at EPFL | KrasLSL-G12D/WT Trp53Flox/Flox CCSP-rtTA | |
Strain, strain background (M. musculus, male, female) | KPRG1 | Interbred at EPFL | KrasLSL-G12D/WT Trp53Flox/Flox Slc2a1Flox/Flox CCSP-rtTA | |
Strain, strain background (M. musculus, male, female) | KL | Interbred at EPFL | KrasLSL-G12D/WT Stk11Flox/Flox | |
Strain, strain background (M. musculus, male, female) | KLG1 | Interbred at EPFL | KrasLSL-G12D/WT Stk11Flox/Flox Slc2a1Flox/Flox | |
Cell line (Homo sapiens) | A549 | ATCC | RRID:CVCL_0023 | Authentication: 100% |
Cell line (Homo sapiens) | Calu-6 | ATCC | RRID:CVCL_0236 | Authentication: 100% |
Cell line (Homo sapiens) | H460 | ATCC | RRID:CVCL_0459 | Authentication: 100% |
Cell line (Homo sapiens) | SW 1573 | ATCC | RRID:CVCL_1720 | Authentication: 93.3% |
Transfected construct (Homo sapiens and M. musculus) | siCTR | Invitrogen | Cat# 4390843 | Transfected construct |
Transfected construct (Homo sapiens) | siSLC2A1#1 | ThermoFisher Scientific | s12926 Cat# 4390824 | Transfected construct |
Transfected construct (Homo sapiens) | siSLC2A1#2 | ThermoFisher Scientific | s12927 Cat# 4390824 | Transfected construct |
Transfected construct (Homo sapiens) | siSLC2A3#1 | ThermoFisher Scientific | s12931 Cat# 4390824 | Transfected construct |
Transfected construct (Homo sapiens) | siSLC2A3#2 | ThermoFisher Scientific | s12932 Cat# 4390824 | Transfected construct |
Antibody | GLUT1 (Rabbit monoclonal) | Abcam | RRID:AB_10903230 | IHC (1:650) |
Antibody | GLUT1 (Rabbit polyclonal) | Millipore | RRID:AB_1587074 | IHC (ngTMA) (1:5000); WB (1:1000) |
Antibody | GLUT3 (Rabbit polyclonal) | Abcam | RRID:AB_732609 | IHC (1:200); WB (1:1000) |
Antibody | PPARα (Rabbit polyclonal) | ThermoFisher Scientific | RRID:AB_2165595 | WB (1:1000) |
Antibody | β-tubulin (Rabbit polyclonal) | Santa Cruz Biotechnology | RRID:AB_2241191 | WB (1:1000) |
Antibody | γ-tubulin (Mouse monoclonal) | Sigma-Aldrich | RRID:AB_477584 | WB (1:10000) |
Recombinant DNA reagent | rtTA (plasmid) | Produced at EPFL | ||
Recombinant DNA reagent | Lenti.PGK-Cre (Viral construct) | Produced at EPFL | ||
Recombinant DNA reagent | Lenti.TRE-PPARαΔ13_ PGK-Cre (Viral construct) | Produced at EPFL | Cloned from PPARαΔ13 plasmid (L. Michalik, UNIL, Lausanne) | |
Recombinant DNA reagent | Ade5.SPC-Cre (Viral construct) | University of Iowa Viral Vector Core Facility | Ade5. SPC-Cre | |
Recombinant DNA reagent | Ade5.CC10-Cre (Viral construct) | University of Iowa Viral Vector Core Facility | Ade5. CC10-Cre | |
Sequence-based reagent | Rpl30 (M. musculus) | ThermoFisher Scientific | Mm01611464_g1 Cat# 4331182 | Taqman probe (Housekeeping gene) |
Sequence-based reagent | Slc2a1 (M. musculus) | ThermoFisher Scientific | Mm00441480_m1 Cat# 4331182 | Taqman probe |
Sequence-based reagent | Slc2a2 (M. musculus) | ThermoFisher Scientific | Mm00446229_m1 Cat# 4331182 | Taqman probe |
Sequence-based reagent | Slc2a3 (M. musculus) | ThermoFisher Scientific | Mm00441483_m1 Cat# 4331182 | Taqman probe |
Sequence-based reagent | Slc2a4 (M. musculus) | ThermoFisher Scientific | Mm00436615_m1 Cat# 4331182 | Taqman probe |
Sequence-based reagent | Slc2a5 (M. musculus) | ThermoFisher Scientific | Mm00600311_m1 Cat# 4331182 | Taqman probe |
Sequence-based reagent | Slc2a6 (M. musculus) | ThermoFisher Scientific | Mm00554217_m1 Cat# 4331182 | Taqman probe |
Sequence-based reagent | Slc2a7 (M. musculus) | ThermoFisher Scientific | Mm01260610_m1 Cat# 4331182 | Taqman probe |
Sequence-based reagent | Slc2a8 (M. musculus) | ThermoFisher Scientific | Mm00444634_m1 Cat# 4331182 | Taqman probe |
Sequence-based reagent | Slc2a9 (M. musculus) | ThermoFisher Scientific | Mm00455122_m1 Cat# 4331182 | Taqman probe |
Sequence-based reagent | Slc2a10 (M. musculus) | ThermoFisher Scientific | Mm01249519_m1 Cat# 4331182 | Taqman probe |
Sequence-based reagent | Slc2a12 (M. musculus) | ThermoFisher Scientific | Mm02375931_s1 Cat# 4331182 | Taqman probe |
Sequence-based reagent | Slc2a13 (M. musculus) | ThermoFisher Scientific | Mm01306489_m1 Cat# 4331182 | Taqman probe |
Sequence-based reagent | Slc5a2 (Sglt2) (M. musculus) | ThermoFisher Scientific | Mm00453831_m1 Cat# 4331182 | Taqman probe |
Sequence-based reagent | Slc50a1 (Sweet) (M. musculus) | ThermoFisher Scientific | Mm00485707_m1 Cat# 4331182 | Taqman probe |
Commercial assay or kit | CD45 microbeads | Miltenyi Biotec | 130-052-301 | CD45 magnetic cell sorting |
Chemical compound, drug | Doxycycline diet (dox) | Kliba Nafag | 3242 diet + DOX 0.625 g kg−1 | 625 mg kg−1 |
Chemical compound, drug | Doxycycline (dox) | Sigma-Aldrich | D9891 | 2 μg ml−1 |
Software, algorithm | Analyze 12.0 | PerkinElmer | Analyze 12.0 | Tumor volume analysis |
Software, algorithm | OsiriX MD | Pixmeo | RRID:SCR_013618 | Tumor volume analysis |
Software, algorithm | QuPath | QuPath | RRID:SCR_018257 DOI: https://doi.org/10.1038/s41598-017-17204-5 |
siRNA | Mixes of | Species | Supplier | References |
---|---|---|---|---|
siCTR | siCTR | Human and Mouse | Invitrogen | Cat# 4390843 |
siSLC2A1 | siSLC2A1#1 | Human | ThermoFisher Scientific | s12926 Cat# 4390824 |
siSLC2A1#2 | Human | ThermoFisher Scientific | s12927 Cat# 4390824 | |
siCTR | Human and Mouse | Invitrogen | 4390843 | |
siSLC2A3 | siSLC2A3#1 | Human | ThermoFisher Scientific | s12931 Cat# 4390824 |
siSLC2A3#2 | Human | ThermoFisher Scientific | s12932 Cat# 4390824 | |
siCTR | Human and Mouse | Invitrogen | Cat# 4390843 | |
siSLC2A1 + siSLC2A3 | siSLC2A1#1 | Human | ThermoFisher Scientific | s12926 Cat# 4390824 |
siSLC2A1#2 | Human | ThermoFisher Scientific | s12927 Cat# 4390824 | |
siSLC2A3#1 | Human | ThermoFisher Scientific | s12931 Cat# 4390824 | |
siSLC2A3#2 | Human | ThermoFisher Scientific | s12932 Cat# 4390824 |
Sample name | Organism | Conclusion |
---|---|---|
A549 | Human | According to our analysis of the submitted sample there is no detectable contamination with human origin. The analyzed data of the submitted sample match 100% to the DNA profile of the cell line A549 (ATCC CRM-CCL-185TM) and 100% over all 15 autosomal STRs to Microsynth’s reference DNA profile of A549 (Mic_150733). |
Calu-6 | Human | According to our analysis of the submitted sample there is no detectable contamination with human origin. The analyzed data of the submitted sample match 100% to the DNA profile of the cell line Calu-6 (ATCC HTB-56TM) and 100% over all 15 autosomal STRs to the DNA profile of Calu-6 (Cellosaurus, RRID:CVCL_0236). |
H460 | Human | According to our analysis of the submitted sample there is no detectable contamination with human origin. The analyzed data of the submitted sample match 100% to the DNA profile of the cell line NCI-H460 [H460] (ATCC HTB-177TM) and 100% over all 15 autosomal STRs to the DNA profile of NCI-H460 (Cellosaurus, RRID:CVCL_0459). |
SW 1573 | Human | According to our analysis of the submitted sample there is no detectable contamination with human origin. The analyzed data of the submitted sample match 93.3% to the DNA profile of the cell line SW 1573 [SW-1573, SW1573] (ATCC CRL-2170TM) and 93.1% over all 15 autosomal STRs to the DNA profile of SW 1573 (Cellosaurus, RRID:CVCL_1720). Cell line samples matching at ≥ 80% of alleles across the eight core reference loci are said to be related. |
siRNA | Mixes of | Species | Supplier | References |
---|---|---|---|---|
siCTR | siCTR | Human and Mouse | Invitrogen | 4390843 |
siGLUT1 | siGLUT1#1 | Human | ThermoFisher Scientific | s12926 |
siGLUT1#2 | Human | ThermoFisher Scientific | s12927 | |
siCTR | Human and Mouse | Invitrogen | 4390843 | |
siGLUT3 | siGLUT3#1 | Human | ThermoFisher Scientific | s12931 |
siGLUT3#2 | Human | ThermoFisher Scientific | s12932 | |
siCTR | Human and Mouse | Invitrogen | 4390843 | |
siGLUT1 + siGLUT3 | siGLUT1#1 | Human | ThermoFisher Scientific | s12926 |
siGLUT1#2 | Human | ThermoFisher Scientific | s12927 | |
siGLUT3#1 | Human | ThermoFisher Scientific | s12931 | |
siGLUT3#2 | Human | ThermoFisher Scientific | s12932 |