Profiling of myristoylation in Toxoplasma gondii reveals an N-myristoylated protein important for host cell penetration

Abstract

N-myristoylation is a ubiquitous class of protein lipidation across eukaryotes and N-myristoyl transferase (NMT) has been proposed as an attractive drug target in several pathogens. Myristoylation often primes for subsequent palmitoylation and stable membrane attachment, however, growing evidence suggests additional regulatory roles for myristoylation on proteins. Here we describe the myristoylated proteome of Toxoplasma gondii using chemoproteomic methods and show that a small-molecule NMT inhibitor developed against related Plasmodium spp. is also functional in Toxoplasma. We identify myristoylation on a transmembrane protein, the microneme protein 7 (MIC7), which enters the secretory pathway in an unconventional fashion with the myristoylated N-terminus facing the lumen of the micronemes. MIC7 and its myristoylation play a crucial role in the initial steps of invasion, likely during the interaction with and penetration of the host cell. Myristoylation of secreted eukaryotic proteins represents a substantial expansion of the functional repertoire of this co-translational modification.

Data availability

All data generated or analyzed during this study are included in the manuscript and supporting files. Source data files have been provided for Figures 5, 6 and 7. Source data for mass spectrometry proteomics results can be found in Supplementary files 1-4. The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE (Perez-Riverol et al., 2019) partner repository with the dataset identifier PXD019677.

The following data sets were generated
The following previously published data sets were used

Article and author information

Author details

  1. Malgorzata Broncel

    Signalling in Apicomplexan Parasites Lab, The Francis Crick Institute, London, United Kingdom
    Competing interests
    No competing interests declared.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-2991-3500
  2. Caia Dominicus

    Signalling in Apicomplexan Parasites Lab, The Francis Crick Institute, London, United Kingdom
    Competing interests
    No competing interests declared.
  3. Luis Vigetti

    Institute for Advanced Biosciences, Université Grenoble Alpes, Grenoble, France
    Competing interests
    No competing interests declared.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-9733-2770
  4. Stephanie D Nofal

    Signalling in Apicomplexan Parasites Laboratory, The Francis Crick Institute, London, United Kingdom
    Competing interests
    No competing interests declared.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-1415-3369
  5. Edward J Bartlett

    Department of Chemistry, Imperial College London, London, United Kingdom
    Competing interests
    No competing interests declared.
  6. Bastien Touquet

    Team Membrane and Cell Dynamics of Host Parasite Interactions, Université Grenoble Alpes, Grenoble, France
    Competing interests
    No competing interests declared.
  7. Alex Hunt

    Signalling in Apicomplexan Parasites Laboratory, The Francis Crick Institute, London, United Kingdom
    Competing interests
    No competing interests declared.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-7431-7156
  8. Bethan Alexandra Wallbank

    Signalling in Apicomplexan Parasites Lab, The Francis Crick Institute, London, United Kingdom
    Competing interests
    No competing interests declared.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-6432-2135
  9. Stefania Federico

    Peptide Synthesis STP, The Francis Crick Institute, London, United Kingdom
    Competing interests
    No competing interests declared.
  10. Stephen Matthews

    Department of Life Sciences, Imperial College London, London, United Kingdom
    Competing interests
    No competing interests declared.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-0676-0927
  11. Joanna Claire Young

    Signalling in Apicomplexan Parasites Lab, The Francis Crick Institute, London, United Kingdom
    Competing interests
    No competing interests declared.
  12. Edward W Tate

    Department of Chemistry, Imperial College London, London, United Kingdom
    Competing interests
    Edward W Tate, EWT is a founder, shareholder and Director of Myricx Pharma Ltd.
  13. Isabelle Tardieux

    Team Membrane and Cell Dynamics of Host Parasite Interactions, Université Grenoble Alpes, Grenoble, France
    Competing interests
    No competing interests declared.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-5677-7463
  14. Moritz Treeck

    Signalling in Apicomplexan Parasites Laboratory, The Francis Crick Institute, London, United Kingdom
    For correspondence
    moritz.treeck@crick.ac.uk
    Competing interests
    No competing interests declared.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-9727-6657

Funding

Francis Crick Institute (FC001189)

  • Malgorzata Broncel
  • Caia Dominicus
  • Stephanie D Nofal
  • Alex Hunt
  • Bethan Alexandra Wallbank
  • Joanna Claire Young
  • Moritz Treeck

NIH Office of the Director (R01AI123457)

  • Malgorzata Broncel
  • Caia Dominicus
  • Moritz Treeck

Leverhulme Trust (RPG-2018-107)

  • Stephen Matthews

Cancer Research UK (C29637/A20183)

  • Edward J Bartlett
  • Edward W Tate

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Copyright

© 2020, Broncel et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 2,407
    views
  • 319
    downloads
  • 24
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Malgorzata Broncel
  2. Caia Dominicus
  3. Luis Vigetti
  4. Stephanie D Nofal
  5. Edward J Bartlett
  6. Bastien Touquet
  7. Alex Hunt
  8. Bethan Alexandra Wallbank
  9. Stefania Federico
  10. Stephen Matthews
  11. Joanna Claire Young
  12. Edward W Tate
  13. Isabelle Tardieux
  14. Moritz Treeck
(2020)
Profiling of myristoylation in Toxoplasma gondii reveals an N-myristoylated protein important for host cell penetration
eLife 9:e57861.
https://doi.org/10.7554/eLife.57861

Share this article

https://doi.org/10.7554/eLife.57861

Further reading

    1. Cell Biology
    2. Microbiology and Infectious Disease
    Clément Mazeaud, Stefan Pfister ... Laurent Chatel-Chaix
    Research Article

    Zika virus (ZIKV) infection causes significant human disease that, with no approved treatment or vaccine, constitutes a major public health concern. Its life cycle entirely relies on the cytoplasmic fate of the viral RNA genome (vRNA) through a fine-tuned equilibrium between vRNA translation, replication, and packaging into new virions, all within virus-induced replication organelles (vROs). In this study, with an RNA interference (RNAi) mini-screening and subsequent functional characterization, we have identified insulin-like growth factor 2 mRNA-binding protein 2 (IGF2BP2) as a new host dependency factor that regulates vRNA synthesis. In infected cells, IGF2BP2 associates with viral NS5 polymerase and redistributes to the perinuclear viral replication compartment. Combined fluorescence in situ hybridization-based confocal imaging, in vitro binding assays, and immunoprecipitation coupled to RT-qPCR showed that IGF2BP2 directly interacts with ZIKV vRNA 3’ nontranslated region. Using ZIKV sub-genomic replicons and a replication-independent vRO induction system, we demonstrated that IGF2BP2 knockdown impairs de novo vRO biogenesis and, consistently, vRNA synthesis. Finally, the analysis of immunopurified IGF2BP2 complex using quantitative mass spectrometry and RT-qPCR revealed that ZIKV infection alters the protein and RNA interactomes of IGF2BP2. Altogether, our data support that ZIKV hijacks and remodels the IGF2BP2 ribonucleoprotein complex to regulate vRO biogenesis and vRNA neosynthesis.

    1. Microbiology and Infectious Disease
    Linkang Wang, Haiyan Wang ... Ping Qian
    Research Article

    Bacillus velezensis is a species of Bacillus that has been widely investigated because of its broad-spectrum antimicrobial activity. However, most studies on B. velezensis have focused on the biocontrol of plant diseases, with few reports on antagonizing Salmonella Typhimurium infections. In this investigation, it was discovered that B. velezensis HBXN2020, which was isolated from healthy black pigs, possessed strong anti-stress and broad-spectrum antibacterial activity. Importantly, B. velezensis HBXN2020 did not cause any adverse side effects in mice when administered at various doses (1×107, 1×108, and 1×109 CFU) for 14 days. Supplementing B. velezensis HBXN2020 spores, either as a curative or preventive measure, dramatically reduced the levels of S. Typhimurium ATCC14028 in the mice’s feces, ileum, cecum, and colon, as well as the disease activity index (DAI), in a model of infection caused by this pathogen in mice. Additionally, supplementing B. velezensis HBXN2020 spores significantly regulated cytokine levels (Tnfa, Il1b, Il6, and Il10) and maintained the expression of tight junction proteins and mucin protein. Most importantly, adding B. velezensis HBXN2020 spores to the colonic microbiota improved its stability and increased the amount of beneficial bacteria (Lactobacillus and Akkermansia). All together, B. velezensis HBXN2020 can improve intestinal microbiota stability and barrier integrity and reduce inflammation to help treat infection by S. Typhimurium.