Ribonucleotide reductase, a novel drug target for gonorrhea

  1. Jana Narasimhan  Is a corresponding author
  2. Suzanne Letinski
  3. Stephen P Jung
  4. Aleksey Gerasyuto
  5. Jiashi Wang
  6. Michael Arnold
  7. Guangming Chen
  8. Jean Hedrick
  9. Melissa Dumble
  10. Kanchana Ravichandran
  11. Talya Levitz
  12. Cui Chang
  13. Catherine L Drennan
  14. JoAnne Stubbe  Is a corresponding author
  15. Gary Karp
  16. Arthur Branstrom  Is a corresponding author
  1. PTC Therapeutics, Inc., United States
  2. Bristol Myers Squibb, United States
  3. Schrödinger, Inc., United States
  4. PMV Pharmaceuticals, United States
  5. Massachusetts Institute of Technology, United States
  6. Howard Hughes Medical Institute, Massachusetts Institute of Technology, United States
  7. PTC Therapeutics Inc, United States

Abstract

Antibiotic resistant Neisseria gonorrhoeae (Ng) are an emerging public health threat due to increasing numbers of multidrug resistant (MDR) organisms. We identified two novel orally active inhibitors, PTC-847 and PTC-672, that exhibit a narrow spectrum of activity against Ng including MDR isolates. By selecting organisms resistant to the novel inhibitors and sequencing their genomes, we identified a new therapeutic target, the class Ia ribonucleotide reductase (RNR). Resistance mutations in Ng map to the N-terminal cone domain of the α subunit, which we show here is involved in forming an inhibited a4b4 state in the presence of the b subunit and allosteric effector dATP. Enzyme assays confirm that PTC-847 and PTC-672 inhibit Ng RNR and reveal that allosteric effector dATP potentiates the inhibitory effect. Oral administration of PTC-672 reduces Ng infection in a mouse model and may have therapeutic potential for treatment of Ng that is resistant to current drugs.

Data availability

All data generated or analyzed during this study are included in the manuscript and supplemental section.

Article and author information

Author details

  1. Jana Narasimhan

    Pharmacology and Biomarkers, PTC Therapeutics, Inc., South Plainfield, United States
    For correspondence
    jnarasimhan@ptcbio.com
    Competing interests
    Jana Narasimhan, was employed by PTC Therapeutics when the work was performed and received salary and compensation during their tenure..
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-5621-8592
  2. Suzanne Letinski

    Analytical Development and Attribute Sciences, Bristol Myers Squibb, New Brunswick, United States
    Competing interests
    Suzanne Letinski, was employed by PTC Therapeutics when the work was performed and received salary and compensation during their tenure..
  3. Stephen P Jung

    Pharmacology and Biomarkers, PTC Therapeutics, Inc., South Plainfield, United States
    Competing interests
    Stephen P Jung, was employed by PTC Therapeutics when the work was performed and received salary and compensation during their tenure..
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-9276-175X
  4. Aleksey Gerasyuto

    Medicinal Chemistry, Schrödinger, Inc., New York, United States
    Competing interests
    Aleksey Gerasyuto, was employed by PTC Therapeutics when the work was performed and received salary and compensation during their tenure..
  5. Jiashi Wang

    Medicinal Chemistry, Schrödinger, Inc., New York, United States
    Competing interests
    Jiashi Wang, was employed by PTC Therapeutics when the work was performed and received salary and compensation during their tenure..
  6. Michael Arnold

    Chemistry, PTC Therapeutics, Inc., South Plainfield, United States
    Competing interests
    Michael Arnold, Arnold,were employed by PTC Therapeutics when the work wasperformed and received salary and compensation during their tenure.
  7. Guangming Chen

    Chemistry, PTC Therapeutics, Inc., South Plainfield, United States
    Competing interests
    Guangming Chen, was employed by PTC Therapeutics when the work was performed and received salary and compensation during their tenure..
  8. Jean Hedrick

    Pharmacology and Biomarkers, PTC Therapeutics, Inc., South Plainfield, United States
    Competing interests
    Jean Hedrick, was employed by PTC Therapeutics when the work was performed and received salary and compensation during their tenure..
  9. Melissa Dumble

    Preclinical Development and Translational Science, PMV Pharmaceuticals, Cranbury, United States
    Competing interests
    Melissa Dumble, was employed by PTC Therapeutics when the work was performed and received salary and compensation during their tenure..
  10. Kanchana Ravichandran

    Department of Chemistry, Massachusetts Institute of Technology, Cambridge, United States
    Competing interests
    No competing interests declared.
  11. Talya Levitz

    Department of Biology, Massachusetts Institute of Technology, Cambridge, United States
    Competing interests
    No competing interests declared.
  12. Cui Chang

    Department of Biology, Massachusetts Institute of Technology, Cambridge, United States
    Competing interests
    No competing interests declared.
  13. Catherine L Drennan

    Department of Biology, Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, United States
    Competing interests
    No competing interests declared.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-5486-2755
  14. JoAnne Stubbe

    Department of Chemistry, Massachusetts Institute of Technology, Cambridge, United States
    For correspondence
    stubbe@mit.edu
    Competing interests
    No competing interests declared.
  15. Gary Karp

    Chemistry, PTC Therapeutics, Inc., South Plainfield, United States
    Competing interests
    Gary Karp, was employed by PTC Therapeutics when the work was performed and received salary and compensation during their tenure..
  16. Arthur Branstrom

    Biology, PTC Therapeutics Inc, South Plainfield, United States
    For correspondence
    abranstrom@ptcbio.com
    Competing interests
    Arthur Branstrom, was employed by PTC Therapeutics when the work was performed and received salary and compensation during their tenure.

Funding

Wellcome Trust (097753)

  • Arthur Branstrom

National Institutes of Health (GM126982)

  • Catherine L Drennan

National Institutes of Health (GM007287)

  • Talya Levitz

National Science Foundation (2017246757)

  • Talya Levitz

National Institutes of Health (GM29595)

  • JoAnne Stubbe

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Ethics

Animal experimentation: Animal studies were done according to procedures reviewed and approved by the Rutgers Institutional Animal Care and Use Committee (IACUC). The IACUC protocol ID used was I12-075-12

Copyright

© 2022, Narasimhan et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 1,426
    views
  • 235
    downloads
  • 10
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Jana Narasimhan
  2. Suzanne Letinski
  3. Stephen P Jung
  4. Aleksey Gerasyuto
  5. Jiashi Wang
  6. Michael Arnold
  7. Guangming Chen
  8. Jean Hedrick
  9. Melissa Dumble
  10. Kanchana Ravichandran
  11. Talya Levitz
  12. Cui Chang
  13. Catherine L Drennan
  14. JoAnne Stubbe
  15. Gary Karp
  16. Arthur Branstrom
(2022)
Ribonucleotide reductase, a novel drug target for gonorrhea
eLife 11:e67447.
https://doi.org/10.7554/eLife.67447

Share this article

https://doi.org/10.7554/eLife.67447

Further reading

    1. Genetics and Genomics
    2. Microbiology and Infectious Disease
    Dániel Molnár, Éva Viola Surányi ... Judit Toth
    Research Article

    The sustained success of Mycobacterium tuberculosis as a pathogen arises from its ability to persist within macrophages for extended periods and its limited responsiveness to antibiotics. Furthermore, the high incidence of resistance to the few available antituberculosis drugs is a significant concern, especially since the driving forces of the emergence of drug resistance are not clear. Drug-resistant strains of Mycobacterium tuberculosis can emerge through de novo mutations, however, mycobacterial mutation rates are low. To unravel the effects of antibiotic pressure on genome stability, we determined the genetic variability, phenotypic tolerance, DNA repair system activation, and dNTP pool upon treatment with current antibiotics using Mycobacterium smegmatis. Whole-genome sequencing revealed no significant increase in mutation rates after prolonged exposure to first-line antibiotics. However, the phenotypic fluctuation assay indicated rapid adaptation to antibiotics mediated by non-genetic factors. The upregulation of DNA repair genes, measured using qPCR, suggests that genomic integrity may be maintained through the activation of specific DNA repair pathways. Our results, indicating that antibiotic exposure does not result in de novo adaptive mutagenesis under laboratory conditions, do not lend support to the model suggesting antibiotic resistance development through drug pressure-induced microevolution.

    1. Microbiology and Infectious Disease
    Linkang Wang, Haiyan Wang ... Ping Qian
    Research Article

    Bacillus velezensis is a species of Bacillus that has been widely investigated because of its broad-spectrum antimicrobial activity. However, most studies on B. velezensis have focused on the biocontrol of plant diseases, with few reports on antagonizing Salmonella Typhimurium infections. In this investigation, it was discovered that B. velezensis HBXN2020, which was isolated from healthy black pigs, possessed strong anti-stress and broad-spectrum antibacterial activity. Importantly, B. velezensis HBXN2020 did not cause any adverse side effects in mice when administered at various doses (1×107, 1×108, and 1×109 CFU) for 14 days. Supplementing B. velezensis HBXN2020 spores, either as a curative or preventive measure, dramatically reduced the levels of S. Typhimurium ATCC14028 in the mice’s feces, ileum, cecum, and colon, as well as the disease activity index (DAI), in a model of infection caused by this pathogen in mice. Additionally, supplementing B. velezensis HBXN2020 spores significantly regulated cytokine levels (Tnfa, Il1b, Il6, and Il10) and maintained the expression of tight junction proteins and mucin protein. Most importantly, adding B. velezensis HBXN2020 spores to the colonic microbiota improved its stability and increased the amount of beneficial bacteria (Lactobacillus and Akkermansia). All together, B. velezensis HBXN2020 can improve intestinal microbiota stability and barrier integrity and reduce inflammation to help treat infection by S. Typhimurium.