(A) Schematics of the assay system. The recording tank was back-lighted by an infrared (IR) LED array with a white paper diffuser. The IR camera was set at the top of the tank, and fish movement was …
(A) Top view of the recording arena. Half of the area was IR illuminated from the bottom, and the other half was not illuminated. The areas of these two regions were exactly the same. (B) No …
Number of fish found in the infrared-lighted or shaded area within a 5 min period.
(A, B) Measurements of nearest neighbour distance (NND) (A) and interindividual distance (IID) (B). Surface fish are shown as black lines, and cavefish are shown as orange lines (N = 18 groups of …
Surface fish’s and cavefish’s inter-individual distance (cm) in every 0.05 s.
Surface fish’s and cavefish’s inter-individual distance (cm) in every 0.05 s.
Event numbers counted under the cut-off distances between pairs of fish in the actual and simulated surface fish data.
Nearby event numbers shorter than 5 cm distance counted more than cut-off duration between pairs of fish in the actual and simulated surface fish data.
Speed (cm/s) during the nearby interaction events and other periods, and the detected nearby interaction duration (s) comparing between the actual and simulated random data.
(A, B and D) An example of nearby-interaction profiles in surface fish (a four-fish group). (A) A histogram of inter-individual distance (IID; left) and raster plot for the nearby-interaction events …
The X-Y coordinates (cm) and distances of each pair (cm) of a four-surface fish group in the dark.
The X-Y coordinates (cm) and distances of each pair (cm) of a four-cavefish group in the dark.
(A) Vector set and their angles for classifying interactions between a fish pair. F1t and F1t-1 are the positions of fish one at times t and t-1, respectively. Similarly, the positions of fish two …
(A) An example frame of recorded surface fish video. Coloured lines represent trajectories of each individual fish detected by idTracker software. Trajectories for 1 s (20 frames) are shown. (B) A …
The X-Y coordinates (cm) and distances of each pair (cm) of a four-surface fish group under the light.
Fish were bath-treated with 0.002% gentamicin for approximately 16 hours before the behavioral assay in an unfamiliar environment. The bath treatment was performed in home trays (15.6 × 15.6 × 5.7 …
Nearby interaction duration (s) under the gentamicin treatment.
(A) Schematics of experimental procedure. Fish were acclimated in the home tray for more than 4 days and were transferred to the recording tank in this unfamiliar environment. After the recording, …
Position-indices in the recording arena under the familiar or unfamiliar environment.
The swimming distances, absolute values of the turning indices, nearby interaction durations, nearby interaction event numbers, and swimming speeds under the familiar or unfamiliar environment.
(A) Diagram showing the calculation formula for the turning bias index. The changes in travelling directions were calculated every five frames (every 0.25 s) across all trajectories and were …
The turning indices of surface fish and cavefish.
(A) Each cavefish was first subjected to the turning assay in the individual recording arena to track their ID. After the initial recording, each cavefish was tattooed with visible implant elastomer …
Repeated measurement of turning indices.
(A, B) In the familiar environment, the logarithmic transformed turning bias index and aspects of nearby interactions were significantly negatively correlated, F1,34 = 9.6, adjusted R2 = 0.198, p = …
The turning bias indices and nearby interaction under the familiar or unfamiliar environment.
The pre-treatment behaviors were recorded for more than four days before the aripiprazole treatment. Aripiprazole and the control DMSO were administered for ~16 hr before the post-treatment …
The swimming distances, absolute values of the turning indices, nearby interaction durations, nearby interaction event numbers, and swimming speeds under the aripiprazole treatment.
The plot of the actual data is shown in black and white, and the simulated data are shown in light blue (N = 16 for both actual and simulated surface fish; N = 20 for both actual and simulated …
The swimming speed and nearby interaction duration in cavefish and surface fish.
Swimming speeds and nearby-interaction durations before (A) and after (B) treatment with aripiprazole (N = 32 from eight groups: F1,18 = 2.1, p = 0.1622; and F1,18 = 0.1, p = 0.8081, respectively) …
Nearby-interaction durations were significantly longer in the actual fish than in the simulated random data in the aripiprazole treatment.
Then, to simplify the calculation, suppose that the two fish swim with the average velocity, , the average of the relative velocity between two fish is given by and (see above).
The arena was illuminated with infrared light. Fish did not respond to the visual stimulus—a moving object (unfamiliar environment).
Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
---|---|---|---|---|
Strain, strain background (Astyanax mexicanus) | Surface (epigean) population | Yoshizawa lab descendant of William R Jeffery lab at Univ Maryland College Park US | SFe; SFg | DOI:10.1126/science.289.5479.631 |
Strain, strain background (Astyanax mexicanus) | Cave (hypogean) population | Yoshizawa lab descendant of Richard Borowsky lab at New York Univ. US | PAby | DOI:10.1101/pdb.prot5093 |
Chemical compound, drug | Aripiprazole | Sellek Chemicals | S1975 | |
Chemical compound, drug | Gentamicin | MilliporeSigma | G1914 | |
Software, algorithm | MATLAB | MathWorks | R2020a | |
Software, algorithm | Python | Python | Python 3.7.4 | |
Software, algorithm | idTracker | Pérez-Escudero et al., 2014 | idTracker-beta | https://github.com/idTracker/idTracker/tree/Beta |
Chemical compound, drug | 4-Di-2-Asp | MilliporeSigma | D3418 |
Detailed statistical scores for Figures 2, 3 and 6 and their figure supplements.