Learning cortical representations through perturbed and adversarial dreaming

  1. Nicolas Deperrois  Is a corresponding author
  2. Mihai A Petrovici
  3. Walter Senn
  4. Jakob Jordan
  1. University of Bern, Switzerland

Abstract

Humans and other animals learn to extract general concepts from sensory experience without extensive teaching. This ability is thought to be facilitated by offline states like sleep where previous experiences are systemically replayed. However, the characteristic creative nature of dreams suggests that learning semantic representations may go beyond merely replaying previous experiences. We support this hypothesis by implementing a cortical architecture inspired by generative adversarial networks (GANs). Learning in our model is organized across three different global brain states mimicking wakefulness, NREM and REM sleep, optimizing different, but complementary objective functions. We train the model on standard datasets of natural images and evaluate the quality of the learned representations. Our results suggest that generating new, virtual sensory inputs via adversarial dreaming during REM sleep is essential for extracting semantic concepts, while replaying episodic memories via perturbed dreaming during NREM sleep improves the robustness of latent representations. The model provides a new computational perspective on sleep states, memory replay and dreams and suggests a cortical implementation of GANs.

Data availability

The current manuscript is a computational study, so no data have been generated for this manuscript. Deep learning benchmark datasets (CIFAR-10 and SVHN) were used for the simulations.We published all code necessary to repeat our experiments in the following repository: https://github.com/NicoZenith/PAD

The following data sets were generated
The following previously published data sets were used

Article and author information

Author details

  1. Nicolas Deperrois

    Department of Physiology, University of Bern, Bern, Switzerland
    For correspondence
    nicolas.deperrois@unibe.ch
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-7178-1818
  2. Mihai A Petrovici

    Department of Physiology, University of Bern, Bern, Switzerland
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-2632-0427
  3. Walter Senn

    Department of Physiology, University of Bern, Bern, Switzerland
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-3622-0497
  4. Jakob Jordan

    Department of Physiology, University of Bern, Bern, Switzerland
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-3438-5001

Funding

European Commission (604102)

  • Mihai A Petrovici
  • Walter Senn
  • Jakob Jordan

European Commission (720270)

  • Mihai A Petrovici
  • Walter Senn
  • Jakob Jordan

European Commission (785907)

  • Mihai A Petrovici
  • Walter Senn
  • Jakob Jordan

European Commission (945539)

  • Mihai A Petrovici
  • Walter Senn
  • Jakob Jordan

Universität Bern (Interfaculty Research Cooperation 'Decoding Sleep')

  • Nicolas Deperrois
  • Walter Senn

Universität Heidelberg (Manfred Stärk Foundation)

  • Mihai A Petrovici

Swiss National Science Foundation (Sinergia Grant CRSII5-180316)

  • Walter Senn

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Copyright

© 2022, Deperrois et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 3,691
    views
  • 664
    downloads
  • 13
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Nicolas Deperrois
  2. Mihai A Petrovici
  3. Walter Senn
  4. Jakob Jordan
(2022)
Learning cortical representations through perturbed and adversarial dreaming
eLife 11:e76384.
https://doi.org/10.7554/eLife.76384

Share this article

https://doi.org/10.7554/eLife.76384

Further reading

    1. Computational and Systems Biology
    2. Physics of Living Systems
    Natanael Spisak, Gabriel Athènes ... Aleksandra M Walczak
    Tools and Resources Updated

    B-cell repertoires are characterized by a diverse set of receptors of distinct specificities generated through two processes of somatic diversification: V(D)J recombination and somatic hypermutations. B-cell clonal families stem from the same V(D)J recombination event, but differ in their hypermutations. Clonal families identification is key to understanding B-cell repertoire function, evolution, and dynamics. We present HILARy (high-precision inference of lineages in antibody repertoires), an efficient, fast, and precise method to identify clonal families from single- or paired-chain repertoire sequencing datasets. HILARy combines probabilistic models that capture the receptor generation and selection statistics with adapted clustering methods to achieve consistently high inference accuracy. It automatically leverages the phylogenetic signal of shared mutations in difficult repertoire subsets. Exploiting the high sensitivity of the method, we find the statistics of evolutionary properties such as the site frequency spectrum and dN/dS ratio do not depend on the junction length. We also identify a broad range of selection pressures spanning two orders of magnitude.

    1. Computational and Systems Biology
    2. Microbiology and Infectious Disease
    Ritwik Maity, Xuepei Zhang ... Javier Sancho
    Research Article

    Antimicrobial resistance is responsible for an alarming number of deaths, estimated at 5 million per year. To combat priority pathogens, like Helicobacter pylori, the development of novel therapies is of utmost importance. Understanding the molecular alterations induced by medications is critical for the design of multi-targeting treatments capable of eradicating the infection and mitigating its pathogenicity. However, the application of bulk omics approaches for unraveling drug molecular mechanisms of action is limited by their inability to discriminate between target-specific modifications and off-target effects. This study introduces a multi-omics method to overcome the existing limitation. For the first time, the Proteome Integral Solubility Alteration (PISA) assay is utilized in bacteria in the PISA-Express format to link proteome solubility with different and potentially immediate responses to drug treatment, enabling us the resolution to understand target-specific modifications and off-target effects. This study introduces a comprehensive method for understanding drug mechanisms and optimizing the development of multi-targeting antimicrobial therapies.