Computational and Systems Biology

Latest articles

1. 1. Computational and Systems Biology
   2. Immunology and Inflammation

   Transformer-based spatial-temporal detection of apoptotic cell death in live-cell imaging

   Alain Pulfer, Diego Ulisse Pizzagalli ... Santiago Fernandez Gonzalez
2. 1. Computational and Systems Biology
   2. Neuroscience

   Supercomputer framework for reverse engineering firing patterns of neuron populations to identify their synaptic inputs

   Matthieu K. Chardon, Y. Curtis Wang ... Charles J. Heckman
3. 1. Computational and Systems Biology
   2. Neuroscience

   Dynamic organization of cerebellar climbing fiber response and synchrony in multiple functional components reduces dimensions for reinforcement learning

   Huu Hoang, Shinichiro Tsutsumi ... Keisuke Toyama

   Dimensions for reinforcement learning reduced by dynamic organization of cerebellar climbing fiber response and synchrony in multiple functional components.
4. 1. Computational and Systems Biology
   2. Developmental Biology

   A Logic-incorporated Gene Regulatory Network Deciphers Principles in Cell Fate Decisions

   Gang Xue, Xiaoyi Zhang ... Zhiyuan Li
5. 1. Cancer Biology
   2. Computational and Systems Biology

   High-content microscopy reveals a morphological signature of bortezomib resistance

   Megan E Kelley, Adi Y Berman ... Gregory P Way
6. 1. Computational and Systems Biology

   A transfer-learning approach to predict antigen immunogenicity and T-cell receptor specificity

   Barbara Bravi, Andrea Di Gioacchino ... Rémi Monasson

   An interpretable machine learning approach can recapitulate the molecular features associated to immune protein-protein binding and leverage them for the prediction of immune response specificity.
7. 1. Computational and Systems Biology

   Bactabolize: A tool for high-throughput generation of bacterial strain-specific metabolic models

   Ben Vezina, Stephen C. Watts ... Kelly L. Wyres
8. 1. Computational and Systems Biology
   2. Structural Biology and Molecular Biophysics

   MDverse: Shedding Light on the Dark Matter of Molecular Dynamics Simulations

   Johanna K. S. Tiemann, Magdalena Szczuka ... Pierre Poulain
9. 1. Computational and Systems Biology
   2. Ecology

   Gut Health: The value of connections

   Vanessa Rossetto Marcelino

   High proportions of gut bacteria that produce their own food can be an indicator for poor gut health.
10. 1. Computational and Systems Biology
    2. Genetics and Genomics

    Systems level identification of a matrisome-associated macrophage polarization state in multi-organ fibrosis

    John F Ouyang, Kunal Mishra ... Jacques Behmoaras