(A) 3 M old Scx-Cre+; Rosa- DTRF/+ (DTR) and Scx-Cre-; Rosa-DTRF/+ (WT) mice received five hind paw injections of DT and were harvested at 3, 6, and 9 M post-depletion. (B) Quantification of total …
(A) Volcano plot and heatmap visualizing the significantly different protein abundances between DTR and WT groups at 3 M post-depletion. (B) Classification of all downregulated proteins between the …
(A) Volcano plot and (B) heatmap visualizing the significantly different protein abundances between DTR and WT groups at 9 M post-depletion. Blue indicates proteins that are decreased in DTR tendons …
(A) Volcano plot and (B) heatmap visualizing the significantly different protein abundances between 12 M old WT and 6 M old DTR groups. Blue indicates proteins that are decreased in 12 M old WT vs. …
(A) UMAP plots of Coch +tenocytes in the 6 M WT, DTR, and 21 M B6 groups. (B) Total tenocyte number of Coch + cells in each condition. (C) % of Coch +normalized by total tenocytes for each …
Timeline of DT injections and tissue harvesting (A). Quantification of CSA (B), stiffness (C), and elastic modulus (D) of WT and DTR tendons at 3, 6, and 9 months post-depletion. CSA, stiffness, and …
(A) UMAP dimensionality reduction revealed seven broad and distinct cell populations on clustering based on unbiased differential gene expression of the integrated dataset. (B) Annotation marker for …
(A) UMAP with all different clusters annotated based on (B). (B) Heatmap of top 15 DEGs for each cluster. (C) Feature plot of the epitenon marker Ccn3 being expressed by the epitenon sub-cluster. (D)…
(A) UMAP plot of the overall tendon resident macrophages as well as separated based on age (6 M WT and 21 M old B6). (B) Heatmap with the top 50 DEG of tendon resident macrophages between the young …
(A) UMAP plot of all three tenocytes subpopulations. (B) UMAP plot showing the shifts of tenocytes 1–3 with depletion and natural aging. (C–E) Quantification of % in tenocytes 1 (C), tenocytes 2 (D),…
(A) UMAP plot of tenocytes 1 in 6 M WT and DTR groups. (B) Volcano plot visualizing all the significantly different genes in tenocytes 1 between 6 M WT vs. 6 M DTR. Blue dots indicate genes that are …
(A) UMAP plot of tenocytes subpopulations in the 6 M WT and DTR groups. (B) Differential number of cell-cell interactions of tenocytes 1–3 in the 6 M WT and DTR groups (red color indicates an …
(A) UMAP plot visualizing the three tenocyte subpopulations that exist in the 6 M WT FDL tendons. (B) Circle plot visualizing the autocrine and paracrine communication strength of each tenocyte …
Both young DTR and aged WT tendons have similar decreases in tissue structure, organization, material quality, and total cell density. They also follow the same mechanism of ECM degeneration via a …
Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
---|---|---|---|---|
Genetic reagent (Mus. musculus) | Scx-Cre | Dr. Ronen Schweitzer | ||
Genetic reagent (Mus. musculus) | C57BL/6-Gt(ROSA)26S ortm1(HBEGF)Awai/J (Rosa-DTRLSL) | Jackson Laboratory | Stock #: 007900 | Referred to as DTR in manuscript RRID:IMSR_JAX:007900 |
Genetic reagent (Mus. musculus) | C57Bl/6 J | Jackson Laboratory | Stock #: 000664 | Referred to as B6 in manuscript RRID:MGI:2159769 |
Antibody | Anti-rabbit Rhodamine- Red-X (donkey polyclonal) | Jackson ImmunoResearch | Catalog #: 711-296-152 | 1:200 RRID:AB_2340614 |
Antibody | Anti-GBP2 (rabbit polyclonal) | Proteintech | Catolog #: 11854–1-AP | 1:500 RRID: AB_2109336 |
Chemical Compound, Drug | Diphtheria Toxin (DT) | Millipore Sigma | Catalog #: D0564-1MG | 20 ng DT / injection |
Software, algorithm | GraphPad Prism software | GraphPad Prism | https://graphpad.com | Version 9.5 |
Software, algorithm | OlyVIA software | Olympus | https://www.olympus-lifescience.com/en/support/downloads/ | Version 2.9 |
Software, algorithm | ImageJ software | ImageJ | http://imagej.nih.gov/ij/ | |
Software, algorithm | R studio | R Studio | https://www.rstudio.com | |
Software, algorithm | DAVID Gene Functional Classification Tool | Huang et al., 2009 | https://david.ncifcrf.gov/ | Version 6.8 |
Software, algorithm | CellChat | Jin et al., 2021 | http://www.cellchat.org | Version 1.1.3 |
Software, algorithm | Seurat R package | Stuart et al., 2019 | https://www.rdocumentation.org/packages/Seurat/versions/4.1.0 | Version 4.0 |
Software, algorithm | Discoverer software platform | Thermo Fisher | Version 2.4 | |
Software, algorithm | PANTHER classification system | Mi et al., 2021 | http://pantherdb.org/ | |
Software, algorithm | Search Tool for Retrieval of Interacting Genes/ Proteins (STRING) | Szklarczyk et al., 2019 | v11.0 | |
Software, algorithm | MatrisomeDB | Hynes and Naba, 2012. | https://web.mit.edu/hyneslab/matrisome/ | |
Software, algorithm | CellMarker software | Zhang et al., 2019 | http://bio-bigdata.hrbmu.edu.cn/CellMarker/search.jsp | |
Other | Gene Expression Omnibus (GEO) | Accession # GSE214929 | Single-cell RNA sequencing data | |
Other | ProteomeXchange Consortium | Dataset Identifier: PXD037230 | Proteomics data |