Conditional blastocyst complementation of a defective Foxa2 lineage efficiently promotes the generation of the whole lung

  1. Akihiro Miura
  2. Hemanta Sarmah
  3. Junichi Tanaka
  4. Youngmin Hwang
  5. Anri Sawada
  6. Yuko Shimamura
  7. Takehiro Otoshi
  8. Yuri Kondo
  9. Yinshan Fang
  10. Dai Shimizu
  11. Zurab Ninish
  12. Jake Le Suer
  13. Nicole C Dubois
  14. Jennifer Davis
  15. Shinichi Toyooka
  16. Jun Wu
  17. Jianwen Que
  18. Finn J Hawkins
  19. Chyuan-Sheng Lin
  20. Munemasa Mori  Is a corresponding author
  1. Columbia University Medical Center, United States
  2. Boston University, United States
  3. Icahn School of Medicine at Mount Sinai, United States
  4. University of Washington, United States
  5. Okayama University, Japan
  6. The University of Texas Southwestern Medical Center, United States
  7. Columbia University, United States

Abstract

Millions suffer from incurable lung diseases, and the donor lung shortage hampers organ transplants. Generating the whole organ in conjunction with the thymus is a significant milestone for organ transplantation because the thymus is the central organ to educate immune cells. Using lineage-tracing mice and human pluripotent stem cell (PSC)-derived lung-directed differentiation, we revealed that gastrulating Foxa2 lineage contributed to both lung mesenchyme and epithelium formation. Interestingly, Foxa2 lineage-derived cells in the lung mesenchyme progressively increased and occupied more than half of the mesenchyme niche, including endothelial cells, during lung development. Foxa2 promoter-driven, conditional Fgfr2 gene depletion caused the lung and thymus agenesis phenotype in mice. Wild-type donor mouse PSCs injected into their blastocysts rescued this phenotype by complementing the Fgfr2-defective niche in the lung epithelium and mesenchyme and thymic epithelium. Donor cell is shown to replace the entire lung epithelial and robust mesenchymal niche during lung development, efficiently complementing the nearly entire lung niche. Importantly, those mice survived until adulthood with normal lung function. These results suggest that our Foxa2 lineage-based model is unique for the progressive mobilization of donor cells into both epithelial and mesenchymal lung niches and thymus generation, which can provide critical insights into studying lung transplantation post-transplantation shortly.

Data availability

scRNA-seq data for mouse gastrulation and early organogenesis described in the manuscript have been analyzed from the deposited database athttps://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/. The authors declare that all data supporting the results of this study are available within the paper and the Supplementary

Article and author information

Author details

  1. Akihiro Miura

    Department of Medicine, Columbia University Medical Center, New York, United States
    Competing interests
    The authors declare that no competing interests exist.
  2. Hemanta Sarmah

    Department of Medicine, Columbia University Medical Center, New York, United States
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-9374-9269
  3. Junichi Tanaka

    Department of Medicine, Columbia University Medical Center, New York, United States
    Competing interests
    The authors declare that no competing interests exist.
  4. Youngmin Hwang

    Department of Medicine, Columbia University Medical Center, New York, United States
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-5190-6062
  5. Anri Sawada

    Department of Medicine, Columbia University Medical Center, New York, United States
    Competing interests
    The authors declare that no competing interests exist.
  6. Yuko Shimamura

    Department of Medicine, Columbia University Medical Center, New York, United States
    Competing interests
    The authors declare that no competing interests exist.
  7. Takehiro Otoshi

    Department of Medicine, Columbia University Medical Center, New York, United States
    Competing interests
    The authors declare that no competing interests exist.
  8. Yuri Kondo

    Department of Medicine, Columbia University Medical Center, New York, United States
    Competing interests
    The authors declare that no competing interests exist.
  9. Yinshan Fang

    Department of Medicine, Columbia University Medical Center, New York, United States
    Competing interests
    The authors declare that no competing interests exist.
  10. Dai Shimizu

    Department of Medicine, Columbia University Medical Center, New York, United States
    Competing interests
    The authors declare that no competing interests exist.
  11. Zurab Ninish

    Department of Medicine, Columbia University Medical Center, New York, United States
    Competing interests
    The authors declare that no competing interests exist.
  12. Jake Le Suer

    Department of Medicine, Boston University, Boston, United States
    Competing interests
    The authors declare that no competing interests exist.
  13. Nicole C Dubois

    Department of Cell, Developmental and Regenerative Biology, Icahn School of Medicine at Mount Sinai, New York, United States
    Competing interests
    The authors declare that no competing interests exist.
  14. Jennifer Davis

    Department of Pathology, University of Washington, Seattle, United States
    Competing interests
    The authors declare that no competing interests exist.
  15. Shinichi Toyooka

    Department of Thoracic, Breast and Endocrinological Surgery, Okayama University, Okayama, Japan
    Competing interests
    The authors declare that no competing interests exist.
  16. Jun Wu

    Department of Molecular Biology, The University of Texas Southwestern Medical Center, Dallas, United States
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-9863-1668
  17. Jianwen Que

    Department of Medicine, Columbia University Medical Center, New York, United States
    Competing interests
    The authors declare that no competing interests exist.
  18. Finn J Hawkins

    Department of Medicine, Boston University, Boston, United States
    Competing interests
    The authors declare that no competing interests exist.
  19. Chyuan-Sheng Lin

    Department of Pathology and Cell Biology, Columbia University, New York, United States
    Competing interests
    The authors declare that no competing interests exist.
  20. Munemasa Mori

    Department of Medicine, Columbia University Medical Center, New York, United States
    For correspondence
    mm4452@cumc.columbia.edu
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-7283-7198

Funding

NHLBI Division of Intramural Research (1R01 HL148223-01)

  • Munemasa Mori

U.S. Department of Defense (PR190557)

  • Munemasa Mori

U.S. Department of Defense (PR191133)

  • Munemasa Mori

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Ethics

Animal experimentation: All animal experiments were approved by Columbia University Institutional Animal Care and Use Committee protocols (AABF8554) in accordance with US National Institutes of Health guidelines.

Human subjects: All works using human iPSC lines are derived from deidentified materials here were conducted under the approval of the ethical committee meeting at Columbia University Medical Canter without the requirement of IRB.

Copyright

© 2023, Miura et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 821
    views
  • 167
    downloads
  • 9
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Akihiro Miura
  2. Hemanta Sarmah
  3. Junichi Tanaka
  4. Youngmin Hwang
  5. Anri Sawada
  6. Yuko Shimamura
  7. Takehiro Otoshi
  8. Yuri Kondo
  9. Yinshan Fang
  10. Dai Shimizu
  11. Zurab Ninish
  12. Jake Le Suer
  13. Nicole C Dubois
  14. Jennifer Davis
  15. Shinichi Toyooka
  16. Jun Wu
  17. Jianwen Que
  18. Finn J Hawkins
  19. Chyuan-Sheng Lin
  20. Munemasa Mori
(2023)
Conditional blastocyst complementation of a defective Foxa2 lineage efficiently promotes the generation of the whole lung
eLife 12:e86105.
https://doi.org/10.7554/eLife.86105

Share this article

https://doi.org/10.7554/eLife.86105

Further reading

    1. Developmental Biology
    2. Evolutionary Biology
    Hope M Healey, Hayden B Penn ... William A Cresko
    Research Article

    Seahorses, pipefishes, and seadragons are fishes from the family Syngnathidae that have evolved extraordinary traits including male pregnancy, elongated snouts, loss of teeth, and dermal bony armor. The developmental genetic and cellular changes that led to the evolution of these traits are largely unknown. Recent syngnathid genome assemblies revealed suggestive gene content differences and provided the opportunity for detailed genetic analyses. We created a single-cell RNA sequencing atlas of Gulf pipefish embryos to understand the developmental basis of four traits: derived head shape, toothlessness, dermal armor, and male pregnancy. We completed marker gene analyses, built genetic networks, and examined the spatial expression of select genes. We identified osteochondrogenic mesenchymal cells in the elongating face that express regulatory genes bmp4, sfrp1a, and prdm16. We found no evidence for tooth primordia cells, and we observed re-deployment of osteoblast genetic networks in developing dermal armor. Finally, we found that epidermal cells expressed nutrient processing and environmental sensing genes, potentially relevant for the brooding environment. The examined pipefish evolutionary innovations are composed of recognizable cell types, suggesting that derived features originate from changes within existing gene networks. Future work addressing syngnathid gene networks across multiple stages and species is essential for understanding how the novelties of these fish evolved.

    1. Developmental Biology
    2. Genetics and Genomics
    Mehul Vora, Jonathan Dietz ... Cathy Savage-Dunn
    Research Article

    Smads and their transcription factor partners mediate the transcriptional responses of target cells to secreted ligands of the transforming growth factor-β (TGF-β) family, including those of the conserved bone morphogenetic protein (BMP) family, yet only a small number of direct target genes have been well characterized. In C. elegans, the BMP2/4 ortholog DBL-1 regulates multiple biological functions, including body size, via a canonical receptor-Smad signaling cascade. Here, we identify functional binding sites for SMA-3/Smad and its transcriptional partner SMA-9/Schnurri based on ChIP-seq peaks (identified by modEncode) and expression differences of nearby genes identified from RNA-seq analysis of corresponding mutants. We found that SMA-3 and SMA-9 have both overlapping and unique target genes. At a genome-wide scale, SMA-3/Smad acts as a transcriptional activator, whereas SMA-9/Schnurri direct targets include both activated and repressed genes. Mutations in sma-9 partially suppress the small body size phenotype of sma-3, suggesting some level of antagonism between these factors and challenging the prevailing model for Schnurri function. Functional analysis of target genes revealed a novel role in body size for genes involved in one-carbon metabolism and in the endoplasmic reticulum (ER) secretory pathway, including the disulfide reductase dpy-11. Our findings indicate that Smads and SMA-9/Schnurri have previously unappreciated complex genetic and genomic regulatory interactions that in turn regulate the secretion of extracellular components like collagen into the cuticle to mediate body size regulation.