Multi-tiered actions of Legionella effectors to modulate host Rab10 dynamics
- Department of Microbiology, Graduate School of Medicine, Gifu University, Japan
- School of Life Sciences, Tokyo University of Pharmacy and Life Sciences, Japan
- Center for One Medicine Innovative Translational Research (COMIT), Gifu University, Japan
Figures
Figure 1 with 1 supplement
The SidE- and SidC-family proteins differentially contribute toward ubiquitination of Rab10.
HEK293T-FcγRII cells transiently expressing 3xFLAG-Rab10 and HA-Ub were infected with the indicated L. pneumophila strains for 1 hr at a multiplicity of infection (MOI) of 20. Rab10 was isolated …
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Figure 1—source data 1
Original files for the western blot analysis in Figure 1a (anti-FLAG and anti-HA).
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig1-data1-v1.zip
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Figure 1—source data 2
PDF containing Figure 1a and original scans of the relevant western blot analysis (anti-FLAG and anti-HA), with cropped areas.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig1-data2-v1.pdf
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Figure 1—source data 3
Original files for the western blot analysis in Figure 1b (anti-FLAG, anti-HA, and anti-Myc).
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig1-data3-v1.zip
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Figure 1—source data 4
PDF containing Figure 1b and original scans of the relevant western blot analysis (anti-FLAG, anti-HA, and anti-Myc), with cropped areas.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig1-data4-v1.pdf
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Figure 1—source data 5
Original files for the western blot analysis in Figure 1c (anti-FLAG and anti-HA).
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig1-data5-v1.zip
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Figure 1—source data 6
PDF containing Figure 1c and original scans of the relevant western blot analysis (anti-FLAG and anti-HA), with cropped areas.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig1-data6-v1.pdf
Figure 1—figure supplement 1
Mutation of Lys102, Lys136, and Lys154 on Rab10 did not eliminate ubiquitination of Rab10 upon infection.
HEK293T-FcγRII cells transiently expressing 3xFLAG-Rab10 or 3xFLAG-Rab10 K102A K136A L154A (KKK) (a) with HA-Ub were infected with the indicated L. pneumophila strains for 1 hr (a) or 7 hr (b) at an …
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Figure 1—figure supplement 1—source data 1
Original files for the western blot analysis in Figure 1—figure supplement 1a (anti-FLAG and anti-HA).
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig1-figsupp1-data1-v1.zip
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Figure 1—figure supplement 1—source data 2
PDF containing Figure 1—figure supplement 1a and original scans of the relevant western blot analysis (anti-FLAG and anti-HA), with cropped areas.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig1-figsupp1-data2-v1.pdf
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Figure 1—figure supplement 1—source data 3
Original files for the western blot analysis in Figure 1—figure supplement 1b (anti-FLAG and anti-HA).
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig1-figsupp1-data3-v1.zip
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Figure 1—figure supplement 1—source data 4
PDF containing Figure 1—figure supplement 1b and original scans of the relevant western blot analysis (anti-FLAG and anti-HA), with cropped areas.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig1-figsupp1-data4-v1.pdf
Figure 2
The SidE- and SidC-family proteins differentially contribute toward recruitment of Rab10 to the Legionella-containing vacuole (LCV).
HeLa-FcγRII cells transiently expressing RFP-Rab10 were infected with the indicated L. pneumophila strains at an MOI of 5 for 4 hr (a) and for the indicated time (b). (a) Representative images of …
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Figure 2—source data 1
Raw images of micrographs in Figure 2a.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig2-data1-v1.zip
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Figure 2—source data 2
Counting data in Figure 2b.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig2-data2-v1.zip
Figure 3
SdcB associates with the Legionella-containing vacuole (LCV) and plays a major role in Ub recruitment to the LCV at late stages of infection.
HeLa-FcγRII cells were infected with the indicated L. pneumophila strains at an MOI of 2 for 1 hr (a, b) and for 7 hr (c, d). (a, c) Representative images of infected cells. Fixed cells were stained …
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Figure 3—source data 1
Raw images of micrographs in Figure 3a.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig3-data1-v1.zip
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Figure 3—source data 2
Raw images of micrographs in Figure 3c.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig3-data2-v1.zip
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Figure 3—source data 3
Counting data in Figure 3, d.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig3-data3-v1.zip
Figure 4 with 2 supplements
The catalytic activity of SdcB enhances retention of Rab10 on the Legionella-containing vacuole (LCV).
(a) HEK293T-FcγRII cells transiently expressing 3xFLAG-Rab10 Q68L (QL) or Rab10 T23N (TN) with HA-Ub were infected with the indicated L. pneumophila strains for 1 hr at an MOI of 50. Rab10 was …
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Figure 4—source data 1
Original files for the western blot analysis in Figure 4a (anti-FLAG).
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig4-data1-v1.zip
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Figure 4—source data 2
PDF containing Figure 4a and an original scan of the relevant western blot analysis (anti-FLAG), with cropped areas.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig4-data2-v1.pdf
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Figure 4—source data 3
Original files for the western blot analysis in Figure 4c (anti-FLAG, anti-HA, and anti-Myc).
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig4-data3-v1.zip
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Figure 4—source data 4
PDF containing Figure 4c and original scans of the relevant western blot analysis (anti-FLAG, anti-HA, and anti-Myc), with cropped areas.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig4-data4-v1.pdf
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Figure 4—source data 5
Raw images of micrographs in Figure 4d.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig4-data5-v1.zip
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Figure 4—source data 6
Counting data in Figure 4b, e.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig4-data6-v1.zip
Figure 4—figure supplement 1
Active Rab10 is preferentially targeted for infection-induced ubiquitination.
HEK293T-FcγRII cells transiently expressing 3xFLAG-Rab10 Q68L (QL) or Rab10 T23N (TN) with HA-Ub were infected with the wild-type L. pneumophila strain or treated with media containing anti-Legionell…
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Figure 4—figure supplement 1—source data 1
Original files for the western blot analysis in Figure 4—figure supplement 1 (anti-FLAG and anti-HA).
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig4-figsupp1-data1-v1.zip
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Figure 4—figure supplement 1—source data 2
PDF containing Figure 4—figure supplement 1 and original scans of the relevant western blot analysis (anti-FLAG and anti-HA), with cropped areas.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig4-figsupp1-data2-v1.pdf
Figure 4—figure supplement 2
The SidE- and SidC-family proteins contribute toward retaining active Rab10 to the Legionella-containing vacuole (LCV).
HeLa-FcγRII cells transiently expressing RFP-Rab10QL were infected with the indicated L. pneumophila strains at an MOI of 10 for 1 hr. Cells were fixed and stained with anti-Legionella antiserum …
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Figure 4—figure supplement 2—source data 1
Raw images of in micrographs in Figure 4—figure supplement 2.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig4-figsupp2-data1-v1.zip
Figure 5 with 2 supplements
The transglutaminase activity of MavC can mediate a unique Ub conjugation to SdcB.
(a) 3xFLAG-SdcB, HA-Ub, and GFP-MavC were coexpressed in HEK293T-FcγRII cells. SdcB was isolated from cell lysates by immunoprecipitation using anti-FLAG magnetic beads and was probed with the …
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Figure 5—source data 1
Original files for the western blot analysis in Figure 5a (anti-FLAG, anti-HA, and anti-GFP).
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig5-data1-v1.zip
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Figure 5—source data 2
PDF containing Figure 5a and original scans of the relevant western blot analysis (anti-FLAG, anti-HA, and anti-GFP), with cropped areas.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig5-data2-v1.pdf
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Figure 5—source data 3
Original files for the western blot analysis in Figure 5b (anti-FLAG, anti-FK2, and anti-GFP).
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig5-data3-v1.zip
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Figure 5—source data 4
PDF containing Figure 5b and original scans of the relevant western blot analysis (anti-FLAG, anti-FK2, and anti-GFP), with cropped areas.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig5-data4-v1.pdf
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Figure 5—source data 5
Original files for the silver stained gel and western blot analysis in Figure 5c (anti-FK2 and anti-His).
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig5-data5-v1.zip
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Figure 5—source data 6
PDF containing Figure 5c and original scans of the relevant silver stained gel and western blot analysis (anti-FK2 and anti-His), with cropped areas.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig5-data6-v1.pdf
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Figure 5—source data 7
Original files for the western blot analysis in Figure 5d (anti-FLAG, anti-HA, and anti-GFP).
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig5-data7-v1.zip
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Figure 5—source data 8
PDF containing Figure 5d and original scans of the relevant western blot analysis (anti-FLAG, anti-HA, and anti-GFP), with cropped areas.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig5-data8-v1.pdf
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Figure 5—source data 9
Original files for the western blot analysis in Figure 5e (anti-FLAG, anti-HA, and anti-GFP).
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig5-data9-v1.zip
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Figure 5—source data 10
PDF containing Figure 5e and original scans of the relevant western blot analysis (anti-FLAG, anti-HA, and anti-GFP), with cropped areas.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig5-data10-v1.pdf
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Figure 5—source data 11
Original files for the western blot analysis in Figure 5f (anti-FLAG, anti-HA, anti-P4D1, and anti-GFP).
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig5-data11-v1.zip
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Figure 5—source data 12
PDF containing Figure 5f and original scans of the relevant western blot analysis (anti-FLAG, anti-HA, anti-P4D1, and anti-GFP), with cropped areas.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig5-data12-v1.pdf
Figure 5—figure supplement 1
SdcB has a catalytic activity of self-ubiquitination with preference of various E2 enzymes.
Ub, E1 enzyme, indicated E2 enzymes, and purified His-SdcB or His-SidC were mixed in the reaction buffer in the presence of ATP and incubated at 30°C for 120 min. The samples were analyzed by sodium …
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Figure 5—figure supplement 1—source data 1
Original files for the silver staining and the western blot analysis in Figure 5—figure supplement 1 (silver staining and anti-FK2).
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig5-figsupp1-data1-v1.zip
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Figure 5—figure supplement 1—source data 2
PDF containing original scans of the silver stained gel and the western blot analysis in Figure 5—figure supplement 1 (anti-FK2) with cropped areas.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig5-figsupp1-data2-v1.pdf
Figure 5—figure supplement 2
The catalytic activity of MavC negatively impacts on auto-ubiquitination of SdcB.
(a) 3xFLAG-SdcB, HA-Ub and GFP-MavC were coexpressed in HEK293T-FcγRII cells. After 24 hr transfection, cell media was replaced with media containing 10 μM of MG132 or equivalent amount of …
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Figure 5—figure supplement 2—source data 1
Original files for the western blot analysis in Figure 5—figure supplement 2a (anti-FLAG, anti-GFP and anti-GAPDH).
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig5-figsupp2-data1-v1.zip
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Figure 5—figure supplement 2—source data 2
PDF containing Figure 5—figure supplement 2a and original scans of the relevant western blot analysis (anti-FLAG, anti-GFP, and anti-GAPDH), with cropped areas.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig5-figsupp2-data2-v1.pdf
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Figure 5—figure supplement 2—source data 3
Original files for the western blot analysis in Figure 5—figure supplement 2b (anti-FK2).
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig5-figsupp2-data3-v1.zip
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Figure 5—figure supplement 2—source data 4
PDF containing Figure 5—figure supplement 2b and original scans of the relevant western blot analysis (anti-FK2), with cropped areas.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig5-figsupp2-data4-v1.pdf
Figure 6 with 2 supplements
Identification of residues on Ub and SdcB between which MavC can crosslink.
(a) MavC catalyzes the formation of an isopeptide bond between the Gln41 of Ub and the Lys518 of SdcB. The indicated proteins were expressed in HEK293T-FcγRII cells and SdcB was isolated from cell …
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Figure 6—source data 1
Original files for the CBB stained gel and western blot analysis in Figure 6a (anti-HA).
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig6-data1-v1.zip
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Figure 6—source data 2
PDF containing Figure 6a and original scans of the relevant CBB stained gel and western blot analysis (anti-HA), with cropped areas.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig6-data2-v1.pdf
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Figure 6—source data 3
Original files for the western blot analysis in Figure 6b (anti-FLAG, anti-HA, and anti-GFP).
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig6-data3-v1.zip
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Figure 6—source data 4
PDF containing Figure 6b and original scans of the relevant western blot analysis (anti-FLAG, anti-HA, and anti-GFP), with cropped areas.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig6-data4-v1.pdf
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Figure 6—source data 5
Original files for the western blot analysis in Figure 6c (anti-FLAG, anti-HA, and anti-GFP).
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig6-data5-v1.zip
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Figure 6—source data 6
PDF containing Figure 6c and original scans of the relevant western blot analysis (anti-FLAG, anti-HA, and anti-GFP), with cropped areas.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig6-data6-v1.pdf
Figure 6—figure supplement 1
Mass spectrometry analysis identified additional residues forming a covalent linkage between Ub and SdcB.
Product ion spectrum was shown for Ub peptide – IQDKEGIPPDQQR crosslinked with SdcB peptide – GYVGVFFSGKENIK.
Figure 6—figure supplement 2
Mutations on Lys518 and Lys891 of SdcB did not affect ubiquitination of Rab10.
HEK293T-FcγRII cells transiently expressing 3xFLAG-Rab10QL and HA-Ub were infected with the L. pneumophila ΔsidCΔsdcAΔsdcB strain expressing Myc-tagged SdcB, its catalytic mutant (SdcB C57A) or SdcB …
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Figure 6—figure supplement 2—source data 1
Original files for the western blot analysis in Figure 6—figure supplement 2 (anti-FLAG, anti-HA, and anti-Myc).
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig6-figsupp2-data1-v1.zip
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Figure 6—figure supplement 2—source data 2
PDF containing Figure 6—figure supplement 2 and original scans of the relevant western blot analysis (anti-FLAG, anti-HA, and anti-Myc), with cropped areas.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig6-figsupp2-data2-v1.pdf
Figure 7 with 2 supplements
Catalytic activity of MavC negatively regulates the Rab10 localization to the Legionella-containing vacuole (LCV).
(a, b) HeLa-FcγRII cells transiently expressing RFP-Rab10 and HA-MavC or its catalytic mutant were infected with the Lp01 ΔsidCΔsdcAΔsdcB strain complemented with the plasmid expressing 3xFLAG-SdcB …
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Figure 7—source data 1
Raw images of micrographs in Figure 7a.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig7-data1-v1.zip
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Figure 7—source data 2
Counting data in Figure 7b, c.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig7-data2-v1.zip
Figure 7—figure supplement 1
Bacterially delivered MavC mediates elimination of Rab10 from the Legionella-containing vacuole (LCV).
Representative images of cells infected with the indicated Lp01 strains at an MOI of 2 for 9 hr (Rab10-positive LCVs (%) were quantified in Figure 7c). Fixed cells were stained for L. pneumophila …
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Figure 7—figure supplement 1—source data 1
Raw images of in micrographs in Figure 7—figure supplement 1.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig7-figsupp1-data1-v1.zip
Figure 7—figure supplement 2
Ectopic expression of SdcB does not proceed Rab10 polyubiquitination even in the presence of SdeA.
Indicated proteins were coexpressed in HEK293T-FcγRII cells. Rab10 was isolated from cell lysates by immunoprecipitation using anti-RFP magnetic beads and was probed with the indicated antibodies. …
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Figure 7—figure supplement 2—source data 1
Original files for the western blot analysis in Figure 7—figure supplement 2 (anti-GFP, anti-RFP, and anti-HA).
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig7-figsupp2-data1-v1.zip
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Figure 7—figure supplement 2—source data 2
PDF containing Figure 7—figure supplement 2 and original scans of the relevant western blot analysis (anti-GFP, anti-RFP, and anti-HA), with cropped areas.
- https://cdn.elifesciences.org/articles/89002/elife-89002-fig7-figsupp2-data2-v1.pdf
Tables
Key resources table
| Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
|---|---|---|---|---|
| Strain, strain background (Legionella pneumophila) | Philadelphia-1 (Lp01) | Berger and Isberg, 1993 | NC_002942.5 | |
| Strain, strain background (Legionella pneumophila) | Lp01ΔicmV ΔdotA (ΔdotA) | Zuckman et al., 1999 | N/A | |
| Strain, strain background (Legionella pneumophila) | Lp01 ΔsidCΔsdcA | This study | N/A | Constructed in Nagai lab |
| Strain, strain background (Legionella pneumophila) | Lp01 ΔsidCΔsdcAΔsdcB | This study | N/A | Constructed in Nagai lab |
| Strain, strain background (Legionella pneumophila) | Lp01 ΔsidEΔsdeAΔsdeBΔsdeC (ΔsidEs) | This study | N/A | Constructed in Nagai lab |
| Strain, strain background (Legionella pneumophila) | Lp01 ΔdupAΔdupB | This study | N/A | Constructed in Nagai lab |
| Strain, strain background (Legionella pneumophila) | Lp01 ΔdupAΔsidJΔdupBΔsdjA | This study | N/A | Constructed in Nagai lab |
| Strain, strain background (Legionella pneumophila) | Lp01 Δlpg2149 | This study | N/A | Constructed in Nagai lab |
| Strain, strain background (Legionella pneumophila) | Lp01 ΔmavCΔmvcA | This study | N/A | Constructed in Nagai lab |
| Strain, strain background (Escherichia coli) | DH5α | TOYOBO | Cat# DNA-903 | Competent cells |
| Strain, strain background (Escherichia coli) | DH5αλpir | Zuckman et al., 1999 | N/A | Competent cells |
| Strain, strain background (Escherichia coli) | BL21(DE3) | NOVAGEN-MERK | Cat# 69450 | Competent cells |
| Cell line (Homo sapiens) | HeLa‐FcγRII | Arasaki et al., 2017 | Established from ATCC CCL-2 | |
| Cell line (Homo sapiens) | HEK293T‐FcγRII | Arasaki and Roy, 2010 | Established from ATCC CRL-3216 | |
| Antibody | anti-FLAG (M2) (Mouse monoclonal) | Sigma | Cat# F1804 | WB (1:1000) |
| Antibody | anti-HA (Mouse monoclonal) | MBL | Cat# M132-3 | WB (1:1000) |
| Antibody | anti-HA (Rabbit monoclonal) | MBL | Cat# 561 | WB (1:1000) |
| Antibody | anti-Ub (FK2) (Mouse monoclonal) | Enzo | Cat# BML-PW8810 | WB (1:1000) |
| Antibody | anti-Ub (P4D1) (Mouse monoclonal) | Santa Cruz | Cat# sc-8017 | WB (1:200) |
| Antibody | anti-GFP (Rabbit polyclonal) | MBL | Cat# 598 | WB (1:2000) |
| Antibody | anti-His (Mouse monoclonal) | Novagen | Cat# 70796-3 | WB (1:1000) |
| Antibody | anti-Myc (Mouse monoclonal) | Roche | Cat# 11 667 203 001 | WB (1:1000) |
| Antibody | anti-RFP (Rabbit polyclonal) | MBL | Cat# PM005 | WB (1:1000) |
| Antibody | Anti-GAPDH (Mouse monoclonal) | Proteintec | Cat# 60004-1-Ig | WB (1:5000) |
| Antibody | anti-Legionella pneumophila (Rabbit polyclonal) | BioAcademia | Cat# 64-100 | IF (1:5000) Opsonization (1:3000) |
| Antibody | Goat anti-mouse IgG (H+L) secondary, HRP | Thermo Fisher | Cat# 62-6520 | WB (1:10,000) |
| Antibody | Goat anti-rabbit IgG (H+L) secondary, HRP | Thermo Fisher | Cat# 65-6120 | WB (1:10,000) |
| Antibody | Alexa Fluor 488 goat anti-mouse | Thermo Fisher | Cat#A-11029 | IF (1:500) |
| Antibody | Alexa Fluor 488 goat anti-rabbit | Thermo Fisher | Cat#A-11034 | IF (1:500) |
| Antibody | Rhodamine RedX goat anti-rabbit | Thermo Fisher | Cat# R6349 | IF (1:1000) |
| Peptide, recombinant protein | Ubiquitin, human recombinant | Boston Biochem | Cat# U-100H | |
| Peptide, recombinant protein | Ubiquitin K63R, human recombinant | Boston Biochem | Cat# UM-K63R | |
| Peptide, recombinant protein | Ubiquitin mutant with K63 only, human recombinant | Boston Biochem | Cat# UM-K630 | |
| Peptide, recombinant protein | UBE1, human recombinant | Boston Biochem | Cat# E-305 | |
| Peptide, recombinant protein | Ubc (E2) Enzyme Kit | Boston Biochem | Cat# K-980B | |
| Chemical compound, drug | N-(2-Acetamido)-2-aminoethanesulfonic acid (ACES) | Sigma | Cat# 7365-82-4 | |
| Chemical compound, drug | N-Ethylmaleimide (NEM) | Sigma | Cat# E3876 | |
| Chemical compound, drug | cOmplete protease inhibitor Cocktail (EDTA free) | Roche (Merk) | Cat# 11873580001 | |
| Chemical compound, drug | SigmaFast Protease Inhibitor Cocktail | Sigma | Cat# S8830 | |
| Chemical compound, drug | Phenylmethylsulfonyl fluoride (PMSF) | Nacarai | Cat# 27327-94 | |
| Chemical compound, drug | MG132 | Calbiochem | Cat# 474791 | |
| Commercial assay kit | Silver Stain MS Kit | FUJIFILM Wako | Cat# 299-58901 | |
| Commercial assay kit | QuickChange II site-directed mutagenesis kit | Agilent | Cat# 200523 | |
| Commercial assay kit | Gibson assembly kit | New England Biolabs | Cat# E2611 | |
| Commercial assay kit | EndoFree Plasmid MAXI prep kits | QIAGEN | Cat# 12362 | |
| Other | 4,6-Diamidino-2-phenylindole (DAPI) | DOJINDO | Cat# GW094 | 1:10,000 |
| Other | Lipofectamine 2000 | Invitrogen | Cat# 11668-019 | Transfection reagent |
| Other | Polyethylenimine (PEI) | Polysciences | Cat# 24765-2 | Transfection reagent |
| Other | Poly-L-lysine | Sigma | Cat# P4707 | 0.01% |
| Other | Paraformaldehyde (PFA) | Sigma | Cat# 441244 | 4% |
| Other | ProLongTM Diamond Antifade Mountant | Thermo Fisher | Cat# P36961 | Antifade moutant |
| Other | Ni-nitrilotriacetic acid (NTA) agarose | QIAGEN | Cat# 30210 | Affinity matrix |
| Other | FLAG M2 magnetic beads | Sigma | Cat# M8823 | Affinity beads |
| Other | Myc-Trap magnetic beads | chromotek | Cat# ytma | Affinity beads |
| Other | RFP-Trap magnetic beads | chromotek | Cat# rtma | Affinity beads |
| Other | Minimum essential medium α (MEMα) | Gibco | Cat# 12571-063 | Medium |
| Other | Dulbecco’s modified Eagle medium (DMEM) | Gibco | Cat# 11885-084 | Medium |
| Other | Fetal bovine serum (FBS) | Sigma | Cat# 172012 | Heat inactivated, 10% |
| Other | Goat serum | Gibco | Cat# 16210-064 | 2% |
Additional files
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Supplementary file 1
Plasmids used in this study are listed.
- https://cdn.elifesciences.org/articles/89002/elife-89002-supp1-v1.docx
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Supplementary file 2
Primers used in this study are listed.
- https://cdn.elifesciences.org/articles/89002/elife-89002-supp2-v1.docx
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MDAR checklist
- https://cdn.elifesciences.org/articles/89002/elife-89002-mdarchecklist1-v1.pdf
