@Among 385 laboratory-confirmed dengue patients in study A, 31 individuals were later included in study B upon hospitalization. Of these, nine had viremia measurements available in both studies and …
The dots represent the measured viremia levels and are connected by lines for each individual patient. The dashed lines indicate the detection limits, which are 300 copies/ml for DENV-1 and DENV-3, …
The colored lines represent the estimated mean viremia levels, and the colored shaded regions represent the corresponding 95% credible intervals. The horizontal lines represent the detection limits …
The colored lines or dots represent the estimated mean platelet counts. The colored shaded regions and whiskers indicate the corresponding 95% confidence intervals. Each row represents the effect of …
The colored lines or dots represent the probability of the endpoints. The colored shaded regions and whiskers indicate the corresponding 95% confidence intervals. Each column represents the effect …
The colored lines represent the probability of the endpoints. The colored shaded regions indicate the corresponding 95% confidence intervals.
t: illness day t (from days 1 to 7). t + i: after day t (i ≥ 1). Outcome can be platelet count or clinical outcomes (severe dengue or plasma leakage)
The figures show the empirical cumulative distribution function of the observed viremia levels (represented by the black curve), along with the empirical cumulative distribution function derived …
The figure shows the empirical cumulative distribution function of the observed platelet counts (represented by the black curve), along with the empirical cumulative distribution function derived …
Values below the detection limit are set as 1/2 of the detection limit in each corresponding transformation scale.
The distribution of platelet count is shown with all measurements (A) and by illness day (B). In (B), the line inside each box represents the median, the upper and lower margins of each box indicate …
The red dots represent values that are higher than the first value. The red and black numbers indicate the number of measurements that are higher and lower than the first value, respectively. The …
The estimated mean viremia levels are represented by colored lines. The 95% credible intervals are shown as colored shaded regions. The horizontal lines indicate the detection limits. Dashed lines …
The estimated mean viremia levels are represented by colored lines. The 95% confidence intervals are shown as colored shaded regions. The horizontal lines indicate the detection limits. Dashed lines …
The colored lines or dots represent the estimated mean platelet counts. The colored shaded regions and whiskers indicate the corresponding 95% confidence intervals. The figures show the effect of …
Relationship between viremia and outcome. A logistic regression model with covariates viremia level (with linear trend) and the binary variable describing whether the viremia value was undetectable …
The colored lines or dots represent the probability of the endpoints. The colored shaded regions and whiskers indicate the corresponding 95% confidence intervals. Each column represents the effect …
The colored lines or dots represent the probability of the endpoints. The colored shaded regions and whiskers indicate the corresponding 95% confidence intervals. Each column represents the effect …
The lines and dots represent the probability of the endpoints. The shaded regions and whiskers indicate the corresponding 95% confidence intervals. Note that the probability of severe dengue in the …
N* | All patients (N = 2340) | Study A (N = 363) | Study B (N = 622) | Study C (N = 1355) | |
---|---|---|---|---|---|
Age, years | 2340 | 13 (10; 18) | 12 (9; 14) | 12 (10; 13) | 16 (10; 25) |
Sex male | 2340 | 1403 (60) | 195 (54) | 412 (66) | 796 (59) |
Illness day at enrolment | 2340 | ||||
1 | 310 (13) | 59 (16) | 7 (1) | 244 (18) | |
2 | 848 (36) | 150 (41) | 155 (25) | 543 (40) | |
3 | 1137 (49) | 114 (31) | 455 (73) | 568 (42) | |
4 | 45 (2) | 40 (11) | 5 (1) | 0 (0) | |
Serotype | 2340 | ||||
DENV-1 | 1264 (54) | 233 (64) | 410 (66) | 621 (46) | |
DENV-2 | 373 (16) | 48 (13) | 130 (21) | 195 (14) | |
DENV-3 | 252 (11) | 80 (22) | 82 (13) | 90 (7) | |
DENV-4 | 451 (19) | 2 (1) | 0 (0) | 449 (33) | |
Immune status | 2340 | ||||
Probable primary | 474 (20) | 134 (37) | 124 (20) | 216 (16) | |
Probable secondary | 1619 (69) | 219 (60) | 464 (75) | 936 (69) | |
Indeterminate | 247 (11) | 10 (3) | 34 (5) | 203 (15) | |
Plasma leakage | 2288 | 353 (15) | 43 (13) | 177 (29) | 133 (10) |
Missing | 52 | 39 | 13 | 0 | |
Illness day of plasma leakage | 327 | ||||
3 | 2 (1) | 0 (0) | 0 (0) | 2 (2) | |
4 | 71 (22) | 12 (30) | 35 (23) | 24 (18) | |
5 | 107 (33) | 12 (30) | 50 (32) | 45 (34) | |
6 | 105 (32) | 12 (30) | 49 (32) | 44 (33) | |
7 | 42 (13) | 4 (10) | 20 (13) | 18 (14) | |
Missing | 26 | 3 | 23 | 0 | |
Severe dengue | 2340 | 65 (3) | 6 (2) | 40 (6) | 19 (1) |
Illness day of severe dengue | 65 | ||||
3 | 2 (3) | 0 (0) | 2 (5) | 0 (0) | |
4 | 13 (20) | 0 (0) | 12 (30) | 1 (5) | |
5 | 24 (37) | 2 (33) | 16 (40) | 6 (32) | |
6 | 20 (31) | 4 (67) | 7 (18) | 9 (47) | |
7 | 6 (9) | 0 (0) | 3 (8) | 3 (16) |
Summary statistics are number of patients (%) or median (25th; 75th percentiles).
DENV: dengue virus.
N represents the number of patients with available data (i.e., without missing data).
Model | Degrees of freedom | Log-likelihood | AIC | BIC |
---|---|---|---|---|
Viremia on the same day | 55 | −502.0 | 1114.1 | 1384.3 |
Viremia 1 day earlier | 55 | −488.2 | 1086.3 | 1356.6 |
Viremia 2 days earlier | 55 | −479.0 | 1068.0 | 1338.3 |
Viremia 3 days earlier | 55 | −452.4 | 1014.9 | 1285.1 |
Viremia 4 days earlier | 55 | −469.6 | 1049.3 | 1319.5 |
Viremia 5 days earlier* | 54 | −478.4 | 1064.8 | 1330.1 |
The model for viremia 5 days earlier had fewer degrees of freedom due to the absence of a binary variable indicating detectable or undetectable viremia values (as all patients had detectable viremia values 5 days earlier).
Model | Day 2 | Day 3 | Day 4 | Day 5 | Day 6 | Day 7 | Day 8 |
---|---|---|---|---|---|---|---|
Same day | 2.0 (24) | –58.7 (145) | –95.9 (220) | –99.7 (227) | –84.9 (198) | –252.6 (533) | –210.5 (449) |
1 day earlier | 0.9 (24) | –53.1 (134) | –95.2 (218) | –98.0 (224) | –80.1 (188) | –243.4 (515) | –208.7 (443) |
2 days earlier | –56.0 (138) | –88.8 (206) | –94.0 (216) | –80.9 (190) | –232.8 (494) | –205.2 (438) | |
3 days earlier | –91.8 (210) | –89.8 (208) | –76.2 (180) | –229.3 (487) | –189.6 (407) | ||
4 days earlier | –92.9 (212) | –78.7 (185) | –241.3 (511) | –189.6 (407) | |||
5 days earlier | –83.0 (192) | –245.4 (517) | –196.5 (419) |
Statistics are log-likelihood (AIC). The highest log-likelihood values (along with the lowest AIC) per column are highlighted in bold. Note that all analyses per each column use the same sample size.
Severe dengue* | Plasma leakage* | ||||||
---|---|---|---|---|---|---|---|
N†† | No(n = 2275) | Yes(n = 65) | No(n = 1935) | Yes(n = 353) | Indeterminate(n = 52) | ||
DENV-1 | 1264 | 1224 (96.8) | 40 (3.2) | 1028 (81.3) | 200 (15.8) | 36 (2.8) | |
Probable primary | 356 (28.2) | 355 (99.7) | 1 (0.3) | 307 (86.2) | 35 (9.8) | 14 (3.9) | |
Probable secondary | 774 (61.2) | 737 (95.2) | 37 (4.8) | 603 (77.9) | 151 (19.5) | 20 (2.6) | |
Indeterminate | 134 (10.6) | 132 (98.5) | 2 (1.5) | 118 (88.1) | 14 (10.4) | 2 (1.5) | |
DENV-2 | 373 | 358 (96.0) | 15 (4.0) | 292 (78.3) | 75 (20.1) | 6 (1.6) | |
Probable primary | 37 (9.9) | 37 (100.0) | 0 (0.0) | 29 (78.4) | 7 (18.9) | 1 (2.7) | |
Probable secondary | 299 (80.2) | 286 (95.7) | 13 (4.3) | 232 (77.6) | 63 (21.1) | 4 (1.3) | |
Indeterminate | 37 (9.9) | 35 (94.6) | 2 (5.4) | 31 (83.8) | 5 (13.5) | 1 (2.7) | |
DENV-3 | 252 | 250 (99.2) | 2 (0.8) | 208 (82.5) | 34 (13.5) | 10 (4.0) | |
Probable primary | 68 (27.0) | 68 (100.0) | 0 (0.0) | 58 (85.3) | 8 (11.8) | 2 (2.9) | |
Probable secondary | 165 (65.5) | 163 (98.8) | 2 (1.2) | 132 (80.0) | 25 (15.2) | 8 (4.8) | |
Indeterminate | 19 (7.5) | 19 (100.0) | 0 (0.0) | 18 (94.7) | 1 (5.3) | 0 (0.0) | |
DENV-4 | 451 | 443 (98.2) | 8 (1.8) | 407 (90.2) | 44 (9.8) | 0 (0.0) | |
Probable primary | 13 (2.9) | 13 (100.0) | 0 (0.0) | 13 (100.0) | 0 (0.0) | 0 (0.0) | |
Probable secondary | 381 (84.5) | 373 (97.9) | 8 (2.1) | 337 (88.5) | 44 (11.5) | 0 (0.0) | |
Indeterminate | 57 (12.6) | 57 (100.0) | 0 (0.0) | 57 (100.0) | 0 (0.0) | 0 (0.0) |
Summary statistics are n (%).
DENV: dengue virus.
The percentages are computed by the total sample size per row.
The percentages of immune status are computed by the total sample size within each DENV serotype.
Parameter | p value |
---|---|
Age (overall effect) | <0.0001 |
- All interactions of Age | 0.0015 |
- Nonlinear effect of Age | <0.0001 |
Sex (overall effect) | 0.0008 |
- All interactions of Sex | 0.0011 |
Serotype (overall effect) | <0.0001 |
- All interactions of Serotype | <0.0001 |
Immune status (overall effect) | <0.0001 |
- All interactions of Immune status | <0.0001 |
PCR method (overall effect) | <0.0001 |
- All interactions of PCR method | <0.0001 |
Day (overall effect) | <0.0001 |
- All interactions of Day | <0.0001 |
- Nonlinear effect of Day | <0.0001 |
Serotype * Immune status | 0.0066 |
Age * Day | 0.0015 |
Sex * Day | 0.0011 |
Serotype * Day | <0.0001 |
Immune status * Day | <0.0001 |
PCR * Day | <0.0001 |
p values are calculated using the Wald test from the R package ‘aod’. This test computes the Wald chi-squared test for 1 or more coefficients given their variance–covariance matrix from the model.
A * B is the interaction between A and B.
PCR: polymerase chain reaction.
Parameter | p value | Parameter | p value |
---|---|---|---|
Age (overall effect) | <0.0001 | Age * Day | <0.0001 |
- All interactions of Age | <0.0001 | Sex * Day | <0.0001 |
- Nonlinear effect of Age | <0.0001 | Serotype * Day | <0.0001 |
Sex (overall effect) | <0.0001 | Immune status * Day | <0.0001 |
- All interactions of Sex | <0.0001 | PCR * Day | <0.0001 |
Serotype (overall effect) | <0.0001 | Landmark * Day | <0.0001 |
- All interactions of Serotype | <0.0001 | Viremia * Day | <0.0001 |
Immune status (overall effect) | <0.0001 | Viremia * Serotype | <0.0001 |
- All interactions of Immune status | <0.0001 | Viremia * Immune status | 0.0017 |
PCR method (overall effect) | <0.0001 | Viremia * PCR | <0.0001 |
- All interactions of PCR method | <0.0001 | Viremia * Landmark | <0.0001 |
Day (overall effect) | <0.0001 | Serotype * Landmark | 0.0403 |
- All interactions of Day | <0.0001 | PCR * Landmark | <0.0001 |
- Nonlinear effect of Day | <0.0001 | Serotype * PCR | <0.0001 |
Landmark (overall effect) | <0.0001 | Serotype * Immune status | <0.0001 |
- All interactions of Landmark | <0.0001 | Viremia * Serotype * PCR | 0.2465 |
- Nonlinear effect of Landmark | <0.0001 | Viremia * Serotype * Day | <0.0001 |
Viremia (overall effect) | <0.0001 | Viremia * PCR * Day | <0.0001 |
- All interactions of Viremia | <0.0001 | Viremia * Serotype * Landmark | 0.2601 |
- Nonlinear effect of Viremia | <0.0001 | Viremia * PCR * Landmark | 0.0846 |
- Undetectable Viremia | 0.1632 | Viremia * Serotype * Immune status | 0.0589 |
Serotype * PCR * Day | <0.0001 | ||
Serotype * PCR * Landmark | 0.1347 | ||
Viremia * Serotype * PCR * Day | 0.4683 | ||
Viremia * Serotype * PCR * Landmark | 0.3646 |
p values are calculated using the Wald test from the R package ‘aod’. This test computes the Wald chi-squared test for 1 or more coefficients given their variance–covariance matrix from the model. Note that the overall effect of viremia includes the binary variable describing detectable or undetectable viremia, and the term ‘Viremia’ in all interactions also consists of that binary variable.
A * B is the interaction between A and B.
PCR: polymerase chain reaction.
Severe dengue | Plasma leakage | |||
---|---|---|---|---|
OR (95% CI) | p | OR (95% CI) | p | |
Viremia level (log-10 copies/ml)* | <0.001 | <0.001 | ||
- 7 vs 6 (on day 1) | 2.98 (1.46; 6.10) | 1.94 (1.50; 2.51) | ||
- 8 vs 7 (on day 1) | 2.27 (1.20; 4.31) | 1.83 (1.44; 2.32) | ||
- 7 vs 6 (on day 2) | 2.10 (1.32; 3.36) | 1.62 (1.36; 1.94) | ||
- 8 vs 7 (on day 2) | 1.60 (1.05; 2.44) | 1.53 (1.29; 1.82) | ||
- 7 vs 6 (on day 3) | 1.51 (1.13; 2.00) | 1.38 (1.20; 1.57) | ||
- 8 vs 7 (on day 3) | 1.15 (0.84; 1.57) | 1.30 (1.11; 1.52) | ||
- 7 vs 6 (on day 4) | 1.18 (0.91; 1.54) | 1.26 (1.10; 1.45) | ||
- 8 vs 7 (on day 4) | 0.90 (0.61; 1.32) | 1.19 (0.98; 1.44) | ||
- 7 vs 6 (on day 5) | 1.08 (0.75; 1.54) | 1.31 (1.10; 1.57) | ||
- 8 vs 7 (on day 5) | 0.82 (0.49; 1.37) | 1.24 (0.96; 1.59) | ||
Undetectable viremia (Yes vs 3 log-10 copies/ml) | 0.48 (0.20; 1.16) | 0.102 | 1.84 (0.51; 6.65) | 0.247 |
Age (years)* | 0.182 | 0.105 | ||
- 15 vs 10 | 0.77 (0.50; 1.18) | 1.07 (0.88; 1.31) | ||
- 20 vs 15 | 0.67 (0.44; 1.04) | 0.95 (0.85; 1.06) | ||
Sex (Male vs Female) | 1.43 (0.79; 2.61) | 0.011 | 1.10 (0.84; 1.45) | 0.711 |
Serotype | <0.001 | <0.001 | ||
- DENV-1 | Ref | Ref | ||
- DENV-2 | 0.95 (0.44; 2.07) | 1.22 (0.84; 1.77) | ||
- DENV-3 | 0.35 (0.08; 1.51) | 0.92 (0.54; 1.56) | ||
- DENV-4 | 2.41 (0.83; 6.98) | 1.19 (0.76; 1.86) | ||
Immune status | <0.001 | <0.001 | ||
- Probable primary | 0.02 (0.00; 0.15) | 0.41 (0.27; 0.63) | ||
- Probable secondary | Ref | Ref | ||
- Indeterminate | 0.32 (0.04; 2.32) | 0.57 (0.30; 1.11) | ||
Study | 0.010 | <0.001 | ||
- Study C | Ref | Ref | ||
- Study A | 1.36 (0.43; 4.28) | 1.24 (0.80; 1.93) | ||
- Study B | 2.86 (1.21; 6.80) | 2.68 (1.92; 3.75) | ||
Landmark (illness day)* | <0.001 | <0.001 | ||
- 5 vs 3 | 1.38 (0.74; 2.57) | 1.37 (1.06; 1.78) | ||
- 7 vs 5 | 0.58 (0.17; 2.05) | 1.34 (0.77; 2.35) | ||
Interaction of viremia† | ||||
- With age | 0.237 | 0.044 | ||
- With sex | 0.004 | 0.590 | ||
- With landmark (illness day) | <0.001 | <0.001 | ||
- With study | 0.030 | 0.261 | ||
- With serotype | <0.001 | <0.001 | ||
- With immune status | <0.001 | 0.001 | ||
- With serotype * immune status | <0.001 | 0.012 | ||
- With serotype * landmark | <0.001 | <0.001 | ||
- With immune status * landmark | <0.001 | 0.014 | ||
- With serotype * immune status * landmark | <0.001 | 0.005 | ||
Interaction of serotype and immune status | <0.001 | <0.001 | ||
Nonlinear trend | ||||
- Viremia level | 0.031 | 0.272 | ||
- Age | 0.349 | 0.017 | ||
- Landmark (illness day) | <0.001 | <0.001 |
* The model incorporates nonlinear effects of log-10 viremia level, age, and illness day on the endpoints. To facilitate the interpretation of the results, ORs and their corresponding 95% CIs are provided for two selected contrasts of viremia level, age, and landmark illness day.
† In the model for plasma leakage, the interactions of viremia include the binary variable describing detectable or undetectable viremia.
Given the complexity of the models involving multiple interactions, ORs and 95% CIs are estimated for specific values of the interacting variables: log-10 viremia of 7, age of 10years, male sex, landmark illness day of 3, serotype DENV-1, and probable secondary infection. CI, confidence interval; DENV, dengue virus; OR, odds ratio; Ref, reference.
Severe dengue | Plasma leakage | |||
---|---|---|---|---|
OR (95% CI) | p | OR (95% CI) | p | |
Rate of decline in viremia (per 0.5 log-10 copies/ml increase) | 0.14 (0.06; 0.33) | <0.001 | <0.001 | |
- DENV-1 – probable primary | 0.23 (0.09; 0.56) | |||
- DENV-1 – probable secondary | 0.12 (0.05; 0.28) | |||
- DENV-2 – probable primary | 0.30 (0.11; 0.80) | |||
- DENV-2 – probable secondary | 0.16 (0.06; 0.38) | |||
- DENV-3 – probable primary | 0.18 (0.06; 0.54) | |||
- DENV-3 – probable secondary | 0.09 (0.03; 0.27) | |||
- DENV-4 – probable primary | 0.78 (0.24; 2.50) | |||
- DENV-4 – probable secondary | 0.40 (0.16; 1.04) | |||
Serotype | 0.001 | 0.006 | ||
- DENV-1 | Ref | Ref | ||
- DENV-2 | 0.74 (0.39; 1.39) | 1.04 (0.75; 1.45) | ||
- DENV-3 | 0.21 (0.05; 0.88) | 0.81 (0.54; 1.22) | ||
- DENV-4 | 8.59 (2.38; 31.03) | 4.84 (2.07; 11.32) | ||
Immune status | <0.001 | <0.001 | ||
- Probable primary | Ref | Ref | ||
- Probable secondary | 63.23 (8.15; 490.31) | 2.77 (1.78; 4.33) | ||
- Indeterminate | 16.29 (1.77; 150.25) | 1.39 (0.68; 2.82) | ||
PCR method | <0.001 | <0.001 | ||
- One-step | Ref | Ref | ||
- Two-step | 33.32 (10.92; 101.66) | 14.62 (6.98; 30.60) | ||
Interaction of rate of decline in viremia | ||||
- With serotype | 0.182 | |||
- With immune status | 0.017 | |||
- With PCR | 0.006 |
The model for severe dengue does not include any interaction term.
In the model of plasma leakage, interactions between the rate of decline in viremia and serotype, immune status, and PCR are included. ORs and 95% CIs of the rate of decline in viremia are estimated for the one-step PCR in each subgroup of serotype and probable primary/secondary infection. ORs and 95% CIs of serotype, immune status, and PCR are estimated for the rate of decline in viremia of 1.4 log-10 copies/ml.
CI, confidence interval; DENV, dengue virus; OR, odds ratio; PCR, polymerase chain reaction; Ref, reference.