Abstract
A central feature of mechanotransduction is the ability of mechanosensitive channels to respond to mechanical stimuli from the surrounding lipid bilayer. Accordingly, the mechanical properties of membranes should play an important role in modulating force transmission to embedded channels, yet the nature of this relationship remains unclear for a wide class of mechanosensitive channels across prokaryotic and eukaryotic systems. Here, we use a synthetic amphiphile to modulate the membrane mechanical properties of cell-derived vesicles and probe channel activation. Using precise membrane mechanical characterization approaches that have rarely been used in conjunction with electrophysiology techniques, we directly characterize three membrane properties and the activation threshold of the E. coli mechanosensitive channel of large conductance (MscL). Our study reveals that decreases in the membrane area expansion modulus, KA, and bending rigidity, kc, correlate with increases in the pressure required to activate MscL and that this effect is reproducible with the mammalian channel, TREK-1. MD simulations demonstrate that polymer-mediated changes in interfacial tension is the best mechanism to describe these experimental results. Together, our results bolster the force-from-lipids mechanism by demonstrating the generality of the relationship between changes in specific membrane mechanical properties and the gating pressure of MscL and TREK-1. In addition, our results reveal the mechanical mechanism by which membrane amphiphiles alter the activity and sensitivity of mechanosensitive channels through changes in long-range force transmission.
Introduction
Mechanosensitive channels are a class of membrane proteins which are found in all domains of life and play important roles ranging from cellular volume regulation to touch and hearing sensation (Brohawn et al., 2019; Cahalan et al., 2015; Cox et al., 2019; Dave et al., 2021; del Mármol et al., 2018; Procko et al., 2021; Sun et al., 2019; Vásquez et al., 2014; Y. Wang et al., 2021). Many mechanosensitive channels are thought to transduce mechanical forces into biochemical signals by opening or closing in response to tension in the lipid bilayer, referred to as the force-from-lipids mechanism (Guo and MacKinnon, 2017; Martinac et al., 2020; Reddy et al., 2019; Ridone et al., 2018; Teng et al., 2015). Through this mechanism, mechanosensitive channels are proposed to be affected by long-range mechanical forces in the membrane that affect the bilayer lateral pressure profile (Anishkin et al., 2014; Bruno et al., 2007; Cordero-Morales and Vásquez, 2018; Pliotas and Naismith, 2017). As membrane tension can propagate distances of tens of microns within seconds in motile cells and axons (Houk et al., 2012; Shi et al., 2022), and the diffusion of tension relies directly on membrane properties (Cohen and Shi, 2020), lipid components that alter membrane mechanical properties should alter force transmission within a membrane and impact the activation of embedded mechanosensitive channels (Johnson, 2015). Toward this idea, others have demonstrated the relationship between membrane composition and mechanosensitive channel function and have shown that changes in membrane composition may modulate force propagation to embedded channels (Brohawn et al., 2014; Caires et al., 2017; Nakayama et al., 2018; Nomura et al., 2012; Ridone et al., 2018). Yet, because different amphiphiles have different effects on mechanosensitive channel activity, the mechanism of their action and the role of membrane mechanical properties on channel activity remains unclear.
To date, it has been difficult to directly resolve the role of membrane mechanical properties in mechanosensitive channel activation for two key reasons. The first is that certain membrane mechanical properties are difficult to experimentally measure. The second is that it can be difficult to significantly change specific membrane properties using lipids alone to isolate or probe their impact on channel activation. Toward the former, a variety of studies have reported that the alteration of membrane properties, through changes in membrane composition, affects mechanosensitive function (Anishkin et al., 2014; Balleza, 2012; Bruno et al., 2007; Caires et al., 2017; Lundbæk et al., 2010, 2004; Ridone et al., 2020, 2018; Romero et al., 2019; Xue et al., 2020). Through these studies, the impact of various membrane properties such as area expansion modulus (KA), the extent to which the membrane stretches in response to tension, bending stiffness (kc), the energy required to bend and smooth thermal fluctuations in a membrane, fluidity, a measure of viscosity or the lateral diffusion of lipids in a membrane, and hydrophobic thickness, the length of the hydrophobic core of the membrane, have been proposed to play a role in mechanosensitive channel behavior (Caires et al., 2017; Nakayama et al., 2018; Ridone et al., 2018; Romero et al., 2019). However, an important knowledge gap is that most of these studies have relied on published estimates of membrane properties or used methods which measure the bulk property of cell membranes, which includes contributions from cytoskeletal mechanics. To better understand how membrane properties affect mechanosensitive channel activation, it would be useful to experimentally probe channel activity in plasma membranes devoid of a cytoskeleton, for example, by using cell-derived, giant plasma membrane vesicles (GPMVs) as a model system. Toward the second reason, the direct role of certain membrane mechanical properties on mechanosensitive channel behavior has been difficult to discern in the presence of purely natural lipids. For example, phospholipids, which are the most abundant class of lipids in living systems, impart only small changes to the area expansion modulus of membranes (Rawicz et al., 2000)— a physical property which is expected to play a significant role in the activation of channels regulated by a force-from-lipids mechanism (Wiggins and Phillips, 2005). The effect of such small changes on mechanosensitive channel behavior is often difficult to detect or distinguish from changes in other membrane properties. However, non-natural amphiphiles, such as the plastics family referred to as poloxamers, can often alter membrane properties to a greater extent than natural lipids (Bermudez et al., 2002; Jacobs et al., 2019; Rawicz et al., 2000). By using GPMVs and incorporating membrane amphiphiles that change the membrane properties in unique and amplified ways, we hypothesized that we could better distinguish the impact of specific properties on protein function.
Here, we experimentally reveal a membrane property that exerts significant influence on the gating of a mechanosensitive channel: interfacial tension. By studying the relationship between membrane properties associated with interfacial tension (e.g., membrane elasticity, and bending rigidity) and the pressure required to activate mechanosensitive channels expressed in mammalian U2OS cells, we validate a hypothesized but not yet confirmed role of interfacial tension in mechanosensitive channel activation. We first establish this relationship for E. coli MscL by using U2OS-derived GPMVs, poloxamer analogues, voltage-clamp electrophysiology studies, and a series of mechanical characterization techniques, and we subsequently extend these findings to the mammalian mechanosensitive channel TREK-1. Further, we performed MD simulations to probe the impact of poloxamers on bilayer properties and found that polymer-mediated modulation of interfacial tension is a likely mechanism driving changes in channel activity. Our results highlight a critical role of membrane amphiphiles in indirectly regulating channel activity via changes in the bulk biophysical properties of membranes, with important implications in defining a mechanism of force-sensing in various living systems from bacterial to neuronal mechanotransduction. As poloxamers are a class of nanoplastic, we comment on the potential impact of nanoplastics on cellular health through interaction with cellular membranes.
Results
Toward the goal of understanding the relationship between membrane amphiphiles and membrane force-transmission to embedded proteins, we prepared channel-containing GPMVs which allow for both assessment of mechanosensitive ion channel activity and membrane mechanical properties (Steinkühler et al., 2021, 2019). GPMVs not only incorporate membrane proteins of interest, but also maintain biological membrane composition and have an overall larger size (>5 µm) required for mechanical characterization via micropipette aspiration, while excluding organelles and cytoskeletal structures that might interfere with measurements of membrane mechanical properties, as in live cells (Figure 1A) (Keller et al., 2009; Levental et al., 2016; Steinkühler et al., 2019). We chose to first focus on the activity of the well-studied Mechanosensitive Channel of Large Conductance (MscL) in GPMVs. This channel opens when the membrane is stretched to permit molecules to flow across the membrane; channel activity can therefore be measured using electrophysiology (Chang et al., 1998; Wang et al., 2014). Specifically, we used a gain of function MscL missense mutation, G22S, as opposed to MscL wild-type (WT), due to the lower activation threshold of the former which increased the number of GPMVs with pressure-gated MscL currents (Figure 1-figure supplement 1A) (Heureaux et al., 2014). We created U2OS cell lines stably expressing an MscL-green fluorescent protein (GFP) fusion protein (Figure 1-figure supplement 2), and induced GPMV formation by adding a vesiculation agent (Figure 1-figure supplement 3). We elected to use N-ethlymaleimide (NEM) rather than the more commonly used paraformaldehyde/dithiothreitol (PFA/DTT) formulation as the latter results in crosslinking of membrane components (Sezgin et al., 2012) and may prevent mechanosensitive channel activation (Figure 1-figure supplement 4). This method also enables the incorporation of membrane additives to modulate membrane mechanical properties (Figure 1-figure supplement 5). The addition of this agent resulted in GPMVs containing MscL visualized by GFP fluorescence and that were an appropriate size for micropipette aspiration measurements (Figure 1A).
We next characterized our MscL-containing, GPMV system to confirm it retained key features of MscL function. We first validated the presence of MscLG22S in GPMVs via fluorescence microscopy using a C-terminal GFP tag, which was observable in our GPMV membranes (Figure 1B). Following this confirmation, we assessed MscLG22S activation sensitivity using patch-clamp electrophysiology techniques with an integrated pressure controller and quantified MscLG22S sensitivity using the pressure at first channel opening (Figure 1-figure supplement 6) (Nomura et al., 2012). We applied a pressure ramp that reached suction pressures above 160 mmHg and observed pressure-induced channel activation in our GPMVs that contained MscLG22S, while no currents were observed in our control GPMVs which lacked MscLG22S (Figure 1C, Figure 1-figure supplement 7). We measured channel conductance by quantifying the current through individual MscLG22S channels under different voltages (Figure 1D). We found the conductance of E. coli MscLG22S and MscLWT to be ∼1 nS in GPMVs (Figure 1E, Figure 1-figure supplement 1B), which is similar to published values of MscL conductance in mammalian cells [∼2 nS] (Doerner et al., 2012) and bacterial membranes [∼ 3 nS] (Sukharev et al., 1999, 1994). In addition, we confirmed that MscLG22S was sensitive to membrane composition in our GPMV platform through the addition of a small inverted cone shaped amphiphile, lysophosphatidylcholine (LPC) as described previously (Figure 1-figure supplement 8) (Nomura et al., 2012). These observations confirmed that the stochastic channel currents we observed were due to pressure-induced MscLG22S activation and that MscLG22S is sensitive to membrane composition in GPMVs, similar to other membrane platforms. This is also, to the best of our knowledge, the first demonstration that MscL activity can be recapitulated in GPMVs, further supporting a bilayer-mediated gating of the channel as originally shown in liposomes (Sukharev et al., 1994).
Poloxamer P124 reduces the pressure-sensitivity of MscL
After characterizing the behavior of MscLG22S in unmodified GPMVs, we next set out to modify the membrane composition to determine the effect of various membrane mechanical properties on MscLG22S activation sensitivity. To modulate membrane properties, we used a poloxamer, which is an amphiphilic triblock copolymer that can integrate into bilayer membranes (Figure 2A) (Großkopf et al., 2021). We included increasing amounts of poloxamer 124 (P124) in the buffer during GPMV formation (Figure 1A) and measured MscLG22S activation pressure in the vesicles using patch-clamp electrophysiology. To confirm that poloxamers can integrate into the membrane, we used MALDI-MS and observed that two types of selected poloxamers, P124 and P188, integrate into membranes (Figure 2-figure supplement 1). Using microscopy, we found that poloxamer addition in certain cases increases GPMV diameter and surface area (Figure 2-figure supplement 2). In addition, we found that P124 increases GPMV stability as determined by resistance to rupture, consistent with previous studies (Figure 2-figure supplement 3) (Calori et al., 2022). Together, these results suggest that poloxamer readily integrates into GPMV membranes.
We found that MscLG22S required higher pressures to activate when GPMVs contained P124 and this response was monotonic with increasing poloxamer concentration, indicating that P124 decreased the sensitivity of MscLG22S (Figure 2B). To further evaluate MscLG22S sensitivity in the presence of P124, we quantified the percent of GPMVs that contained MscLG22S currents out of all recorded GPMVs which exhibited GFP fluorescence. In this quantification, we only monitored currents up to a maximum pressure above -80 mmHg, under which we would normally expect MscLG22S activation in a poloxamer-free membrane. We found in GPMVs with the highest buffer concentration of P124 (0.1% wt/vol), only ∼20% of GPMV recordings contained active MscLG22S currents, indicating that MscLG22S was not activating in ∼80% of GPMVs prepared in high concentrations of P124 (Figure 2-figure supplement 4). Together, these results suggest that the pressure sensitivity of MscLG22S is reduced in the presence of P124 and increases in P124 content eventually leads to a large fraction of channels failing to productively open.
We then investigated how P124 altered GPMV mechanical properties. Using micropipette aspiration techniques, we measured the area expansion modulus (KA) (Jacobs et al., 2021) and bending rigidity (kc) (Rawicz et al., 2000) of GPMVs treated with P124 for greater than 4 hours (Figure 2C, D; Figure 2-figure supplement 5). We found that membrane KA and kc decreased with increasing P124 concentration in the buffer (Figure 2E, F). We then measured P124 fluidity using fluorescence anisotropy techniques and did not observe a significant change in membrane fluidity in the presence of P124 (Figure 2-figure supplement 6).
We wondered how these changes in mechanical properties induced by P124 may affect mechanosensitive channel behavior. To assess this relationship, we plotted MscLG22S activation pressure as a function of each of these membrane mechanical property measurements and found that decreases in membrane KA and kc correlate with commensurate increases in MscLG22S activation pressure, r = -0.89 and -0.99, respectively (Figure 2-figure supplement 7). These results suggest that the reduced sensitivity of MscLG22S to pressure in the presence of P124 may be related to the alteration of specific membrane mechanical properties.
Various poloxamers and a detergent reveal a correlation between KA, kc and MscL activation sensitivity
To further explore the generality of the relationship between membrane mechanical properties and MscLG22S activation sensitivity, we used a chemically distinct detergent and an expanded set of poloxamers. We selected the detergent C12E8, which is known to decrease membrane KA (Jacobs et al., 2019; Otten et al., 2000), and measured the effect of this molecule on MscLG22S activation sensitivity. Similar to our results in the presence of P124, C12E8 increased the pressure required to activate MscLG22S (Figure 3-figure supplement 1A) although C12E8 did not depress the percent of active channels to the same extent as P124 (Figure 3-figure supplement 1B). We then measured the mechanical properties of GPMVs treated with C12E8 and confirmed that this molecule has a softening effect on membranes, reducing the KA and kc (Figure 3-figure supplement 1C, D, E). We then measured the effect of other poloxamers with similar chemical structures but differing molecular weights on MscLG22S pressure sensitivity and membrane mechanical properties (Figure 1-figure supplement 5, Figure 3-figure supplement 2, 3). We plotted the activation pressure of MscLG22S as a function of KA, kc, and fluidity for each of the amphiphiles in which we measured both MscLG22S activation and membrane properties and found similar trends as when we evaluated these relationships for each amphiphile individually (Figure 3, Figure 3-figure supplement 4, Figure 2-figure supplement 7). We found that membrane KA (r = -0.71) (Figure 3A) and kc (r = -0.81) (Figure 3B) correlated with MscLG22S activation pressure, however, as we observed in the GPMVs containing P124, fluidity did not correlate well with MscLG22S activation pressure (r = 0.15) (Figure 3C). Taken together, these results confirm that MscLG22S behavior is sensitive to changes in membrane composition and properties where conditions with reduced KA and kc generally correlate with a reduction in the pressure sensitivity of MscLG22S (Figure 3D).
P124 does not alter MscL activity through pore occlusion or changes in membrane thickness but may function through reduction in interfacial tension
We sought to understand the mechanism behind amphiphile-induced changes in MscLG22S activation sensitivity, and we elected to rule out the possibility that P124 modulates MscLG22S through a mechanism other than altering membrane mechanical properties. We first hypothesized that P124 could modulate MscLG22S through pore occlusion (Figure 4A). As MscLG22S conductance depends directly on pore size when measured in identical buffer conditions, a decrease in conductance would be expected if P124 resides within the MscLG22S pore (Banerjee et al., 2013; Rokitskaya et al., 2017). We measured the conductance of MscLG22S in the presence of increasing amounts of P124 and found that MscLG22S conductance was not affected by P124 (Figure 4B, C). We included C12E8 as a control which is chemically distinct from poloxamer and would therefore not be expected to interact with MscLG22S in the same way and found that C12E8 also did not affect MscLG22S conductance. Together, these observations suggest that P124 and C12E8 do not reside within the MscLG22S pore while in the active conformation.
To further address the possibility that P124 alters MscL activation through pore occlusion, we measured the propensity of P124 to alter activation of a chemically-inducible mutant of MscL that is insensitive to pressure. A mutation within the pore of MscL serves as a hydrophobic gate (G22C) which can be activated by the addition of [2-(trimethylammonium)ethyl] methanethiosulfonate bromide (MTSET), a chemical which forcibly hydrates the pore by introducing charge (Yoshimura et al., 2001). We hypothesized that if P124 occluded the MscL pore, MTSET would be unable to open the MscLG22C channel. To assess MscLG22C opening in GPMVs upon MTSET binding, we monitored Ca2+ influx via a fluorescent Ca2+ indicator, Fluo4. We first validated this assay by ensuring that internal vesicle fluorescence, indicating Ca2+ influx, increased only in the presence of the chemically activatable mutant of MscL G22C, and not the pressure sensitive mutant G22S, when MTSET was present (Figure 4D, Figure 4-figure supplement 1). We also confirmed MscLG22C’s lack of pressure sensitivity (Figure 4-figure supplement 2) (Levin and Blount, 2004). We then determined if MscLG22C chemical activation was altered by P124 addition by quantifying the internal fluorescence of GPMVs containing P124 in the presence of MTSET. This assay showed that P124 did not inhibit MscLG22C activation relative to the no P124 control (Figure 4E) and all conditions resulted in small but detectable increases in Ca2+-induced fluorescence relative to the MTSET-insensitive control. Taken together, these results suggest that P124 does not occlude the MscL pore.
Another potential mechanism by which MscLG22S activation could be altered in the presence of P124 is through increased membrane thickness (Figure 4F). MscL is known to be sensitive to membrane thickness where thinner membranes reduce the gating threshold of MscL (Ridone et al., 2018) and thicker membranes desensitize MscL (Nomura et al., 2012; Ridone et al., 2018). We do not expect membrane thickness to be increased in the presence of poloxamer based on our bending rigidity measurements, because the reduced kc values suggest a decreased membrane thickness (Figure 3B). To further investigate this hypothesis, we performed molecular dynamics simulations to measure changes in membrane thickness, surface area, and KA after P124 incubation (Figure 4G). Our simulations demonstrated that P124 inserts into the bilayer and this integration increases surface area (Figure 4H) and reduces membrane KA (Figure 4-figure supplement 3) but does not alter membrane thickness significantly (Figure 4I).
To better understand how polymers affect the mechanical properties of our membranes, we simulated the effect of mechanical tension on P124-containing lipid membranes (Figure 4J, 4K).
At zero tension, the polyoxyethylene (PEO) hydrophilic groups of the polymer protrude deeply into the water phase, resulting in an extended, “PEGylated” lipid bilayer. The conformation of the polymer changes with applied tension. Specifically, we observed that PEO obtains a more compact conformation “focused” at the lipid-water interface under tension. The behavior reflects the fact that PEO has partially amphiphilic character (Israelachvili 1997), and the lipid bilayer prefers to adsorb PEO to minimize exposure to water molecules that might otherwise penetrate the hydrophobic region of the membrane exposed under tension. Spontaneous adsorption of PEO groups (i.e., a thermodynamically-favored process) implies that the water-bilayer interfacial tension is reduced by P124 when under increased mechanical tension. Since interfacial tension is a known driver of MscL activity (Melo et al., 2017; Ollila et al., 2011), these data suggest a potential mechanism for how P124 increases MscL’s opening pressure despite decreasing membrane elastic properties KA and kc.
TREK-1 activation sensitivity also correlates with KA and kc and supports the force-from-lipids gating of mechanosensitive channels
Finally, we sought to explore the generality of our findings with another mechanosensitive channel. We chose to measure the effect of P124 on the mouse potassium channel, TWIK-related K+ channel 1 (TREK-1), a mechanosensitive channel found in neurons that can be activated by force-from-lipids and is sensitive to changes in membrane composition (Brohawn et al., 2014). Using a similar expression scheme as for MscL, we created stable cell lines of TREK-1 tagged with mEGFP (Figure 5-figure supplement 1), which was retained in the membrane after GPMV formation (Figure 5-figure supplement 2). We observed TREK-1 single-channel currents in response to a pressure gradient using an integrated pressure controller. Similar currents were not observed in non-transfected cells, lacking the channel, and exposed to the same experimental conditions (Figure 5A, Figure 5-figure supplement 3). We measured TREK-1 conductance using voltage-clamp electrophysiology measuring the respective current through a single channel and observed an outward conductance of 140 pS, similar to the conductance of TREK-1 in cellular systems (Figure 5B) (Heurteaux et al., 2004; Xian Tao Li et al., 2006). The inward conductance was undetectable below +50 mV, suggesting a primarily outward rectifying channel, consistent with previous observations (Xian Tao Li et al., 2006). We next determined if TREK-1 activation pressure was altered by P124. We treated TREK-1-containing GPMVs with P124 and observed an increase in the pressure required to activate the first TREK-1 channel (Figure 5C). Again, the chemically distinct C12E8 amphiphile also increased the channel activation pressure (Figure 5C), similar to our results with MscL (Figure 2B, Figure 3-figure supplement 1A). Finally, we wondered if TREK-1 activation could be predicted by membrane properties. We plotted KA, kc, and fluidity as a function of TREK-1 activation pressure. Similar to MscL, we observed a strong correlation between TREK-1 activation pressure and KA (r = -0.99) and kc (r = -0.97) (Figure 5D, E). As we observed for MscL, there was not a strong correlation between membrane fluidity and TREK-1 activation pressure (r = -0.50) (Figure 5F). These results suggest that, as for MscL, a correlative relationship exists between membrane elastic properties, KA, and kc, and TREK-1 activation sensitivity. Taken together, our observations suggest that inclusion of non-natural amphiphiles can drive changes in membrane mechanical properties that are sufficient to alter mechanosensitive channel activation.
Discussion
Through a series of micropipette aspiration and patch-clamp electrophysiology studies, we have determined the effect of various poloxamers and a chemically distinct detergent on membrane properties and mechanosensitive channel behavior. By measuring these membrane properties directly, we found that membrane KA and kc inversely correlate with activation sensitivity of a mechanosensitive MscL variant, while membrane fluidity does not to the same extent. We found that the amphiphiles we used did not appear to significantly change membrane thickness or occlude MscL pores, factors that would be expected to impact channel activity. Instead, polymer-mediated changes in MscL activation threshold are likely due to differences in bilayer mechanical properties. Finally, we determined that KA and kc also correlate to the behavior of more complex mechanosensitive channels in higher organisms by assessing the behavior of TREK-1 in response to changes in membrane properties. Our findings, together with molecular dynamics simulations, point to a specific mechanical property that influences pressure sensitivity of the studied channels: interfacial tension. By decreasing interfacial tension in the membrane, a greater force is required to activate MscL and TREK-1. To our knowledge, our study is the first to directly measure multiple membrane properties using GPMVs in conjunction with electrophysiology assessments to directly implicate interfacial tension, KA, and kc in MscL and TREK-1 activation sensitivity.
Mechanosensitive channel activation sensitivity is an important feature of all mechanosensitive channels. Overactive mechanosensitive channels may lead to deleterious effects ranging from a loss in cell volume in bacteria or red blood cells (Cahalan et al., 2015; Levin and Blount, 2004) to persistent itch disease in higher organisms (LaMotte, 2016). Membrane composition has been increasingly shown to modulate the force-from-lipids activation of mechanosensitive channels and this effect is hypothesized to be due to changes in global membrane properties (Bruno et al., 2007). We recently showed that membrane amphiphiles can impact membrane properties in unpredictable ways (Jacobs et al., 2021) underlying the importance of directly measuring membrane properties when drawing conclusions about their role in a physiological outcome. While a number of studies discuss the effects of membrane properties on mechanosensitive channel activation (Nomura et al., 2012; Ridone et al., 2018; Xue et al., 2020), and there is increasing appreciation of the need to measure channel activity in response to applied membrane tension (Lewis and Grandl, 2015; Lüchtefeld et al., 2024), few have directly measured membrane properties (Caires et al., 2017; Nakayama et al., 2018; Romero et al., 2019) to determine their impact on channel function. Moreover, to the best of our knowledge no studies to date have used the classical micropipette aspiration technique (Kwok and Evans, 1981) in conjunction with patch-clamp electrophysiology to directly determine the relationship between membrane properties and mechanosensitive channel function. Accordingly, the body of research to date has left an unexplored gap between membrane mechanical properties and mechanosensitive channel behavior that we have sought to address. In the present study, we demonstrated that specific membrane properties modulate the force-from-lipids activation of two mechanosensitive channels.
How do our findings compare with the existing models of mechanosensitive channel activity? We start with a classic thermodynamical model of MscL opening, where the free energy difference, ΔG, between the open and closed states of MscL can be divided into three contributions (Ollila et al. 2011; Phillips et al. 2009; Wiggins and Phillips 2005). Here, ΔG refers to the free energy of opening the channel:
The term ΔGmembranerefers to the energetic costs incurred from the elastic deformations of the lipid bilayer that are required to accommodate MscL, ΔGproteinrefers to the energy difference of the open and closed state of MscL (to include any changes in lipid-protein interactions), and −γΔA describes the impetus for channel activation which is the product of the protein surface area gained (ΔA) by opening the channel with applied tension (γ). We define ΔΔGexp as the free energy difference of channel opening between a lipid-only membrane and a modified membrane. We reason that most contributors to the ΔGmembrane and Gprotein terms are unlikely to contribute to ΔΔGexp (Supplementary Note 1). In the following sections, we discuss how the γΔA term, specifically the interfacial tension in the membrane, and certain contributors to the ΔGmembrane term, specifically changes in KA and kc, may explain our data in the context of existing models.
The term −γΔA describes the gain in energy from opening the channel, increasing the protein’s membrane area by ΔA with tension γ, and this is the core contribution to the force-from-lipids hypothesis; we assert this term best explains how the presence of polymer increases the channel activation pressure threshold. The applied tension acts against the lateral pressure profile induced by the membrane that surrounds MscL (Ollila et al., 2011). Therefore, lowering the water-bilayer interfacial tension leads to higher activation pressures (Melo et al., 2017). Mechanistically, MscL’s gating is driven by its tension-sensitive N-terminal helix which resides along the bilayer-water interface (Bavi et al., 2016), supporting our interpretation. Prior MD simulations suggest that MscL opening is most sensitive to changes in the head-group surface water-bilayer interfacial tension, leading to the approximation ΔΔG = −ΔγintΔA (Melo et al., 2017; Ollila et al., 2011). Our simulations provide direct evidence for a lower interfacial tension in the membrane with applied tension due to recruitment of the PEO chains of the poloxamer polymers to the membrane-water interface (Figure 4K). However, simulations do not provide the magnitude of the reduction of interfacial tension. We can, however, benchmark the expected magnitude of the effect from air-lipid monolayers studies and compare these values to estimates derived from our measurements. Jordanova et al studied membranes containing the lipid DPPE with poloxamer P188 and found a change of interfacial tension of the lipid monolayer of about Δγint ≈ −12 mN/m with adsorption of saturating polymer concentrations (Jordanova, Tenchov, and Lalchev 2011). We extract ΔΔGexp from the experimentally-measured changes in opening pressure ΔP for P124 at 0.1 % (Figure 2B) as , where R is the radius of the membrane patch in the pipette (R = 2.5 – 4 µm is a typical range in our experimental setup) (Wiggins and Phillips 2005). Assuming a ΔA of 20 nm2 (Chiang et al., 2004; Phillips et al., 2009), we find that ΔΔGexp and ΔΔG are similar at 298K (2-3.2 x 10-19 Nm or 50-79 KbT and 2.3 x 10-19 Nm or 57 KbT, respectively). This concordance supports our proposed mechanism whereby P124-containing membranes increases MscL activation pressure thresholds primarily by reducing interfacial tension.
We next consider the key ΔGmembrane contribution between different membrane compositions (ΔΔGmembrane) in our study: the membrane-based, elastic costs of MscL opening. These elastic costs are proportional to the area expansion modulus KA and bending rigidity kc of the membrane (Wiggins and Phillips, 2005). We discuss other, likely insubstantial, contributions to ΔΔGmembrane in Supplementary Note 1 (membrane asymmetry and hydrophobic mismatch). With respect to elastic membrane costs, Figures 2E, F show that the addition of P124 decreases KA and kc, and following from published thermodynamic models, it appears that this should reduce the energetic cost of MscL opening and the activation pressure threshold of MscL (ΔPopen) because the membrane should require less energy to deform to accommodate MscL’s open state (Nomura et al., 2012; Wiggins and Phillips, 2005). This is not the effect observed in Figure 2B and Figure 2-figure supplement 7A. To explain this apparent incongruity, we hypothesize that the addition of P124 to lipid membranes drives several, related elastic property changes which oppose one another. While polymer-containing membranes have lower KA and kc than lipid-only membranes (reducing the relative cost of opening a channel via ΔΔGmembrane), the polymer also lowers interfacial tension during membrane stretching (Figure 4K; reducing the thermodynamic driver of MscL opening, γΔA). To explain our results, we reason that the magnitude of ΔΔGmembrane is smaller than the differences in γΔA between membrane compositions (50-79 KbT). This is consistent with order of magnitude estimates of ΔGmembrane contributors, the scaling of these contributors with KA and kc, and our results from Figure 2E,F (Supplementary Note 1). Together, this suggests that although membrane elastic properties are important for MscL opening, and these properties correlate strongly with ΔPopen, polymer-mediated effects on interfacial tension are likely the dominant mechanism driving MscL behavior in our study. When we focus on interfacial tension as the dominant property driving mechanosensitive channel activation, the relationships between KA and kc with activation pressure make sense. Because these properties are proportional to interfacial tension with KA ∝ 4γint and kc ∝ KAd2, where d is the hydrophobic core thickness, changes in interfacial tension should proportionally alter these two membrane properties (Lipowsky and Sackmann, 1995), which is what we observed experimentally. In summary, we have compared our experimental results to available models for MscL gating and found that the polymer-induced changes of interfacial tension fit quantitatively to the force-from-lipid hypothesis. This property, which in turn alters the KA and kc values of membranes, is likely the dominant mechanism to explain the relationship between membrane properties measured here, membrane composition, and MscL gating.
Although most poloxamers we studied exhibited a monotonic effect on membrane properties and channel activation as a function of poloxamer concentration, we observed a non-monotonic effect of P184 concentration on MscLG22S activation and kc. While most poloxamers generally decreased KA and kc as a function of concentration (Figure 2, Figure 2-figure supplement 7, Figure 3-figure supplement 3), P184 induced a slight decrease in KA at all concentrations while kc decreased at low concentrations then returned to baseline levels at higher concentrations (Figure 3-figure supplement 3). Interestingly, we observed a similar effect between membrane kc and MscLG22S activation pressure in the presence of P184 (Figure 3-figure supplement 2). We are unsure of the mechanism of this non-monotonic effect of P184 on kc but attribute it to the large number of hydrophobic blocks relative to the small number of hydrophilic blocks in the polymer which likely leads to the polymer residing in a different location in the membrane relative to the other polymers explored (Rabbel et al., 2015). For example, P184 may increase membrane stiffness at higher concentrations through interdigitation (Battaglia and Ryan, 2005) or through changing the depth of P184 insertion in the membrane at high concentrations which is known to alter membrane properties (Grage et al., 2022; Zaki and Carbone, 2017). We speculate that these changes in polymer identity and integration at high concentration may also modulate polymer-mediated reduction in interfacial tension (as observed in Figure 4K for P124), for example by changing how the hydrophilic blocks adsorb to the bilayer under tension. In general, our results suggest that the effect membrane amphiphiles have on membrane properties can vary as a function of not only amphiphile identity, but also concentration, and may affect membrane mechanical properties in unexpected, nonmonotonic ways, further underscoring the importance of directly measuring membrane properties to determine the impact of membrane-associating biochemicals on physiological responses.
Finally, our observations of poloxamers interacting with membranes and altering mechanical properties and mechanosensitive channel activity highlight a potential unwanted effect of membrane amphiphiles on cellular membranes. Poloxamers represent a widely used class of nanoplastics. The concentrations of poloxamer we chose to assess in the present study are commonly used in laboratory cell culture applications to prevent cell sticking and improve cell integrity and are also found at these concentrations in household products (Guzniczak et al., 2018). Our findings suggest that poloxamers used at these concentrations may alter the behavior of membrane-embedded ion channels which in turn may affect environmental and human health or may affect biophysical studies in unexplored ways. In addition, these findings propose one potential mechanism for the alteration of biological function in response to nanoplastic pollution which has remained elusive (Fleury and Baulin, 2021)—modulation of global membrane mechanical properties. Our results suggest that nanoplastics which have been increasingly shown to interact with cellular membranes (Fleury and Baulin, 2021; Goodman et al., 2021; Hollóczki and Gehrke, 2019), may alter biological function by modulating membrane physical properties and the subsequent behavior of membrane-embedded proteins (Huang et al., 2022; Ohashi et al., 2020).
Conclusion
In conclusion, we observed that various membrane-associating amphiphiles that decrease two membrane mechanical properties—membrane KA and kc—increase the force required to activate mechanosensitive channels. Our results support a mechanism in which membrane interfacial tension, a modulator of both KA and kc, regulates force transmission to mechanosensitive channels. Our study is the first to our knowledge to measure mechanosensitive channel activation as a function of membrane mechanical properties. By harnessing the unique features of polymeric amphiphiles, we could systematically alter several membrane properties by varying the amount of polymer present in the membrane. Our findings demonstrate that while KA and kc may be important for mechanosensitive channel function in some systems, they are not the dominating properties governing channel activation in our system containing non-natural amphiphiles. Rather, the relationships we observed between KA, kc, and channel activation pressure appeared to be a byproduct of alterations in a more dominant property, interfacial tension. These observations, using two distinct mechanosensitive channels, highlight a connection between the membrane physical environment and mechanosensitive channel function to show that bilayer properties, such as interfacial tension, are important mediators of mechanical force to channel proteins. Our results, accordingly, support the force-from-lipids mechanism of mechanosensitive channel activation by demonstrating that membrane composition and the associated bilayer mechanical properties can modulate mechanosensitive function through long-range, indirect interactions.
Material and Methods
Materials
Gibco G418 (geneticin), McCoy’s 5A medium, Opti-MEM transfection medium, Fetal Bovine Serum (FBS), CaCl2, MES sodium salt, BAPTA NA4, Poloxamer 188, 124, 407, and 184, Tris, B-casein, Fluo-4, MTSET, diphenylhexatriene, 12:0 LPC, molecular biology buffers and enzymes, and polyethylenimine 25K were obtained from Thermo Fisher Scientific. HEPES, NaCl, N-ethylmaleimide, and EGTA was purchased from Millipore Sigma. Human Osteosarcoma U-2 OS HTB-96 cell line was purchased from ATCC.
Methods
Mammalian expression plasmid cloning
The E.Coli MscL-mEGFP fusion gene, EcMscLGFP, was amplified using polymerase chain reaction (PCR) and inserted into a mammalian pcDNA3.0 vector (Invitrogen) using restriction digest. A G22C mutation was introduced in the mscl gene using primers with a point mutation and the entire plasmid was amplified using PCR. The cloned plasmids were transformed into Top10 electrocompetent cells, midiprepped (PureLink Plasmid Midiprep Kit, Thermo Fisher), and plasmid inserts were confirmed using Sanger sequencing. TREK-1 was amplified using PCR and cloned into the pcDNA3.0 vector as a fusion to GFP by removal of EcMscL using restriction enzymes. Insertion and GFP fusion of TREK-1 was confirmed using Sanger sequencing. MscL and TREK-1 mutants were tagged with mEGFP on their C-terminus; see plasmid maps in Supplementary File 2. The MscL sequence was derived from pET19b:EcMscLGFP which was used previously as an in vitro membrane protein folding reporter (Addgene plasmid # 165097) (Jacobs et al., 2019). The TREK-1 sequence was from pGEMHE:mTREK-1(K271Q), which was a gift from Dan Minor (Addgene plasmid # 133270) (Lolicato et al., 2017).
Stable cell line transfection and selection
U2OS cells were plated in a 24-well plate and grown to 70% confluency on the day of transfection. Mammalian expression vectors containing EcMscLGFP or TREK-1GFP were transfected into U2OS cells using polyethylenimine (PEI). 500 ng DNA was mixed with 100 μL Opti-MEM transfection media and 2.5 μg PEI. This solution was incubated for 15 minutes at room temperature (20-25°C) then added dropwise to U2OS cells in 1 mL McCoy’s 5A media with 10% FBS. The transfection media was replaced with fresh McCoy’s 5A with 10% FBS and 300 μg/mL geneticin after overnight incubation. Transfected cells were selected using 300 μg/mL geneticin in McCoy’s 5A media with 10% FBS for 1 month or until the cells reached confluency in a T-75 75 cm2 flask. Cells were further propagated in McCoy’s 5A with 10% FBS and 100 μg/mL geneticin. Selection efficiency was confirmed using GFP fluorescence which was expressed as a fusion protein to the protein of interest.
GPMV formation and treatment with poloxamer
GPMV formation was performed using established techniques (Sezgin et al., 2012). Briefly, U2OS cells were plated at least one day prior to GPMV formation and grown to 70% confluency in a 6 well plate at the time of GPMV formation. GPMV buffer was used for all GPMV preparations and consisted of 10 mM HEPES, pH 7.4, 150 mM NaCl, and 2 mM CaCl2. N-ethylmaleimide (NEM) was prepared at 0.25 M in sterile water and stored in 300 μL aliquots. 30 μL NEM was added to 1 mL of GPMV buffer containing the indicated concentration of pre-dissolved poloxamer or detergent and mixed by vortexing. Cells were washed twice with GPMV buffer. The NEM-GPMV buffer solution was then added gently to the U2OS cells and incubated at 37 °C for 1 hour. GPMVs were observed and subsequently removed from adherent cells by gentle aspiration and were incubated for at least 3 additional hours at 4 °C prior to experiments to ensure poloxamer equilibration.
Fluorescence and phase-contrast microscopy
Cells and GPMVs were imaged using epifluorescence and phase-contrast microscopy to confirm transfection and protein transfer to GPMV membranes. Glass bottom, 96-well plates were passivated by incubating β-casein solution at 5 mg/mL in 10 mM Tris, pH 7.4 in each well for 30 minutes at room temperature. This solution was replaced with GPMV buffer at pH 7.4 and GPMVs were diluted to a concentration suitable to observe single GPMVs. GPMVs were imaged using differential interference contrast (DIC) and transfection efficiency and membrane protein integration were confirmed using epifluorescence with a GFP filter. All images being compared were brightness and contrast adjusted with identical settings and imaged at 20% light with identical exposure times. Images were taken on a Nikon Eclipse Ti2 Inverted Microscope, and analysis was performed using NIS software, ImageJ (Schindelin et al., 2012), and GraphPad Prism 9.
Micropipette aspiration
GPMV membrane area expansion modulus (KA) and bending rigidity (kc) were measured using micropipette aspiration techniques (Evans et al., 1976). Micropipettes were constructed from borosilicate glass capillaries (World Precision Instruments) pulled using a P-1000 micropipette puller (Sutter instruments). The end was blunted and polished to an inner diameter of 5–8 μm using a microforge. The micropipette and sample chamber surfaces were passivated using 5 mg/mL β-casein for 1 hour and were filled with GPMV buffer, pH 7.4. 10 μL GPMVs prepared in the presence of poloxamer, detergent, or no additive were diluted in a 1 mL glass chamber in GPMV buffer, pH 7.4 (10 mM HEPES, 150 mM NaCl, 2 mM CaCl2). Imaging was performed on a Nikon inverted microscope connected to a Validyne pressure sensor and digital manometer (model DP 15-32; Validyne Engineering, Northridge, CA). A Narishige micromanipulator was used to control the micropipette (model WR-6; Narishige). GPMVs free of visible defects were aspirated and the membrane areal response to a change in pressure was measured using a series of DIC images with pressure recordings. Membrane Kapp is calculated from the slope of the percent area dilation within the pipette (ΔA/Ao) and membrane tension (τ),
where ΔA is the change in area of GPMV membrane within the micropipette and Ao is the initial area of the aspirated GPMV within the pipette. Compared to previous studies Kapp was measured at elevated tensions that recruit any membrane area reservoirs and thus probe the elastic response of the membrane (Steinkühler et al., 2021). Bending elastic modulus, kc is calculated from the same aspiration measurements through the following equation in the low-tension regime (<0.5 mN/m),
where kB is the Boltzmann constant, and T is temperature. Membrane KA is calculated through correction of Kapp with kc by subtraction for relaxation of thermal undulations measured by kc (Rawicz et al., 2000; Zhou and Raphael, 2005). For each stress/strain measurement in the area expansion regime, the contributions of thermal undulations (Δα(i)) was subtracted from the areal strain (ΔA/Ao),
where τ(1) is the initial tension. The corrected areal change was then plotted against τ and the slope of this plot was used to calculate KA.
Patch Clamp electrophysiology of stretch-activated ion channels
Channel activity measurements were performed in identical conditions as micropipette aspiration. GPMVs containing EcMscL and TREK-1 prepared under indicated poloxamer conditions were added to an open-air bath on an Olympus IX73 phase-contrast microscope. Electrophysiology pipettes were pulled using a Sutter P-1000 micropipette puller and fire polished using a microforge to 5-8 MΩ resistance. Voltage-clamp measurements were recorded on a Molecular Devices Axon Instruments system including an amplifier and digitizer Low-Noise Data Acquisition System plus Hum silencer along with an ALA Scientific Instruments High Speed Pressure Clamp pressure controller which was used to apply a pressure ramp during electrophysiology recordings. All signals were integrated using Clampex software and pressure and current values were recorded temporally. A pressure ramp from 0 mmHg to -160 mmHg was applied at a constant rate for all recordings. EcMscL and TREK-1 recordings were performed at -10 mV and -40 mV, respectively unless channel conductance calculations were being measured. Pressure and current were recorded through these experiments and were used to calculate pressure sensitivity and channel conductance, respectively. Each pressure sensitivity recording was performed on an independent GPMV and pressure ramps were never repeated as a decrease in pressure sensitivity is observed after repeat pressure ramps because of an increase in membrane tension when the membrane patch diffuses up the pipette (Nomura et al., 2012). All electrophysiology recordings were performed at 25 °C. Bath solution was composed of 10 mM HEPES, pH 7.4, 150 mM NaCl, 2 mM CaCl2 for MscL and 10 mM HEPES, pH 7.4, 150 mM KCl, 2 mM CaCl2 for TREK-1. The pipette solution was composed of 10 mM HEPES, pH 7.4, 100 mM NaMES, 10 mM BAPTA Na4, 10 mM NaCl, 10 mM EGTA. All recordings were performed in the cell-attached or excised-patch configuration. A seal > 8 GΩ was used as criteria for analysis of single-channel observations.
Electrophysiology data analysis
Electrophysiology experiments were quantified using Clampfit software which displayed the current and pressure during the voltage-clamp recording. EcMscL and TREK-1 channel activation sensitivities were quantified using the pressure at first channel opening which has been described previously (Nomura et al., 2012). Many recordings only contained one channel, and this first channel was clearly distinguished from electrical noise. However, some recordings contained many channels which could not be distinguished from membrane unsealing, making maximum current an unreliable measurement. Membrane rupture pressure was calculated by the pressure at which a very large current change occurred, indicating complete membrane rupture. Single channel conductance was measured by calculating the current through single channels at various voltages and was independent from pipette pressure. Each current and voltage measurement was recorded from an independent GPMV, and this measurement was not repeated by any single GPMV to mimic pressure sensitivity measurement conditions. The slope of many of these I/V relationships was used to calculate channel conductance. TREK-1 was observed to behave similarly to previous studies and had a short dwell time and was potassium selective with a much smaller conductance than MscL (Xian Tao Li et al., 2006).
Mass Spectrometry
Mass spectrometry (MS) was used to characterize the integration of poloxamer into the GPMVs. Samples were prepared as described for GPMV formation and free poloxamer was removed by centrifugation at 12,000 x g for 30 minutes. Pelleted GPMVs were stored at -80 °C until analysis. Matrix-assisted laser desorption/ionization time of flight (MALDI-TOF) MS was carried out using an Autoflex® speed MALDI-TOF (Bruker Daltonik GmbH,Bremen Germany). A 10 mg/mL matrix solution of α-cyano-4-hydroxycinnamic acid (CHCA) in 70% ACN in water with 0.1% trifluoroacetic acid (TFA) was prepared. Using the dried drop (DD) method, aqueous solutions of P124-only, P188-only standards and P124-GPMV, P188-GPMV integrated samples were mixed with the matrix at a ratio of 1:1 (vol/vol). For each sample, 5000 shots were fired using the “random walk” function. Positive ion data was collected in both the linear and reflectron modes with external calibration. The acquisition mass ranges were m/z 1000–4000 and m/z 4000–12500 for P124 samples and P188 samples, respectively. For the poloxamer(P)-GPMV samples, mass range for the P-GPMV lipids was m/z 500–1000.
Anisotropy
Fluorescence anisotropy measurements were used to determine relative membrane fluidity as described previously (Jacobs et al., 2021). 1 mL stock GPMVs were prepared and unbound poloxamer micelles were removed from solution through centrifugation at 10,000 x g for 1 minute, removing supernatant solution, and resuspension of GPMVs in 1 mL GPMV buffer. A diphenylhexatriene (DPH) stock solution was prepared by adding dry DPH to GPMV buffer at 100 μM. This solution was mixed 1:1 with purified GPMVs and anisotropy was measured using an Agilent Technologies Cary Eclipse Fluorescence Spectrophotometer with an Automated Polarization Accessory. Fluorescence anisotropy was assessed at excitation 360 nm and emission 435 nm and was calculated by software provided with the instrument,
where Ivv and Ivh are the intensities of the vertically and horizontally polarized light, respectively, after excitation with vertically polarized light. G = Ihv/Ihh which is a grating correction factor for the optical system.
Chemical activation of MscL and calcium imaging
Fluo4, a calcium indicator which has been used previously to sense mechanosensitive channel behavior (Cahalan et al., 2015), was used to determine if P124 inhibits MscL activation through inhibition of pore hydration. Briefly, Fluo4 was mixed with GPMV buffer to a 1x dye concentration. GPMV formation solution was prepared by adding 30 μL of 0.25 M NEM to 1 mL of diluted Fluo4 solution in GPMV buffer. Cells were washed twice with GPMV buffer and incubated in GPMV formation solution for 1 hour at 37 °C. Free-floating GPMVs were isolated by transferring formation solution to an Eppendorf tube and incubated for 3 additional hours. A glass-bottom 96-well plate was passivated by incubating with a β-casein solution in 10 mM Tris, pH 7.4 for 30 min at room temperature. The wells were rinsed 3 times with GPMV buffer and 100 μL GPMV buffer with 5 mM CaCl2 was added to each desired well. 10 μL GPMVs were added to the bottom of each well. 5 μL of 21 mM MTSET was added to each well and GPMVs were incubated for 30 min at room temperature. Ca2+ influx through MscL opening was quantified from raw images by a fluorescence increase in the GFP channel for each GPMV visible in the DIC channel of a Nikon Ti2 Inverted Microscope.
Molecular Dynamics Simulations
P124 polymer was assembled using CHARMM-GUI Polymer Builder from PEO and PPO groups from the CHARMM36 forcefield (Choi et al., 2021; Jo et al., 2008). Based on previous work (Rabbel et al., 2015) we assumed that P124 inserts as a harpin into the membrane. We further assumed that the incubation time is sufficient for P124 to flip-flop in the membrane and assume a symmetric configuration. The polymer chains were pre-equilibrated in water and a harpin-like conformation was selected by hand. Varying number of polymer chain copies were then inserted to a pre-equilibrated DOPC membrane (300 lipids in total) as indicated by the mol fraction reported in Figure 4H,I and Figure 4-figure supplement 3. The parallel periodic membrane images were separated by a 4 nm water layer. Simulations were run using GROMACS (2020) with a timestep of 2 fs, Verlet cutoff-scheme, electrostatics and LJ interactions cutoff at 1.2 nm and PME long-range electrostatics. Simulations were run NPT ensemble, using a Nose-Hoover thermostat and semi-isotropic Parrinello-Rahman pressure coupling for a (laterally) tensionless membrane. Temperature coupling was done with the Nose-Hoover algorithm. The membrane elastic modulus KA was estimated from the thermal bilayer lateral area fluctuations from a (fully equilibrated) 500 ns long trajectory (Feller and Pastor, 1999). Membrane thickness was calculated from the lipid headgroup phosphate distances between the two leaflets using MDAnalysis version 0.20.1 (Michaud-Agrawal et al., 2011). Statistical uncertainties in the membrane elastic modulus and thickness were estimated using blocking analysis (Flyvbjerg and Petersen, 1989) implemented in pyblock (James Spencer, http://github.com/jsspencer/pyblock) with block sizes chosen to remove temporal correlation from the data set (Wolff, 2004). To induce, membrane tension in the experiment for Figure 4K, the simulation box size was fixed to induce a positive area strain. Specifically, we considered the simulation of a single P124 harpin per membrane leaflet that in the membrane plane had an average area of 10.2 x 10.2 nm2 at zero membrane tension. Fixing this area to 10.8 x 10.8 nm2 induced an area strain of about 12% and included a mechanical tension of 17 mN/m (calculated using gmx energy, GROMACS).
Supplemental Figures
Supplementary Notes
Supplementary Note 1
The following is a continuation of the thermodynamic model of MscL opening presented in the Discussion. Remember that ΔG refers to the free energy cost of opening the channel per the below equation.
Recall that the term ΔGmembrane refers to the energetic costs incurred from the elastic deformations of the lipid bilayer that are required to accommodate MscL, ΔGprotein refers to the energy difference of the open and closed state of MscL, and −γΔA describes the impetus for channel activation which is the product of the protein surface area gained (ΔA) by opening the channel with applied tension (γ). The primary focus of the Discussion was the −γΔA term and the ΔGmembrane term; here, we explain key assumptions and further rationale for assuming ΔGmembrane and ΔGprotein are not substantial contributors when explaining the different behaviors of MscL opening in membranes with and without poloxamer 124.
Beginning with important assumptions, we note that we experimentally investigated how MscL opening pressure varies with membrane composition (e.g., Figures 2B, 3) using a patch-clamp setup with an integrated pressure transducer. At constant micropipette and GPMV geometry in such an experiment, one can assume that the applied channel-opening pressure (Popen) is proportional to the opening free energy of MscL (ΔG) (Wiggins and Phillips, 2005). We will further assume that changes in opening pressure for MscL in different membrane compositions (ΔPopen) is proportional to changes in free energy of MscL opening in those compositions (ΔΔGexp, i.e., the free energy change from a lipid-only membrane to a polymer-containing membrane).
In line with other work, we assume that ΔGprotein remains constant in experiments where we modified membrane compositions using the same MscL variants to observe ΔΔGexp (Melo et al., 2017; Wiggins and Phillips, 2005). Indeed, it has been shown that MscL opening via delipidation of the transmembrane pocket and via applied tension results in the same channel structures for very different pore-opening forces (B. Wang et al., 2021). This supports our use of a constant ΔGprotein in our experiments for tension-mediated pore opening for a given MscL variant. We also assume the lipid-protein interaction energy between the open and closed states for membranes with and without P124 are similar. This assumption is consistent with other reports using alcohols to modify membranes (Melo et al., 2017) and is supported by the observations in Figure 4A-E that P124 does not impact conductance and therefore likely does not occlude the channel pore. Therefore, although we cannot rule out the possibly that protein-membrane interactions may change slightly with the incorporation of P124 into membranes, our assumption that ΔGprotein remains constant is supported by our observations and other reports.
The contribution ΔGmembranecan be further dissected into several terms that, in the typically used continuum mechanical membrane model, depend on the membrane elastic parameters of bending rigidity, area expansion modulus and membrane spontaneous curvature (Phillips et al., 2009). To date, hydrophobic thickness and local curvature strain have emerged as the predominant such modulators of MscL activation. In general, thinner membranes reduce the activation pressure of MscL as a result of hydrophobic mismatch (Katsuta et al., 2019; Ridone et al., 2018) and high local curvature favors the channel open state (Bavi et al., 2014; Doerner et al., 2012; Nomura et al., 2012; Wang et al., 2014). In the following two paragraphs, we are considering differences in membrane properties resulting from the addition of polymer to membranes.
At a high level, we expect ΔGmembrane to penalize the open MscL configuration in part because a typical membrane hydrophobic thickness is larger than the hydrophobic region of the open, “thinned”, MscL configuration—this difference can induce a large hydrophobic mismatch between membrane thickness and channel thickness that is thermodynamically unfavorable (Perozo et al., 2002; Phillips et al., 2009; Ursell et al., 2007; Wiggins and Phillips, 2005). From simulations (Figure 4I), we found only very small changes in membrane thickness with polymer P124, suggesting that the ΔGmembrane cost due to hydrophobic mismatch is highly similar for membranes with and without P124.
With respect to ΔGmembrane, it is important to consider membrane spontaneous curvature which results from membrane asymmetry (Perozo et al., 2002). This effect is highlighted in experiments where LPC was added to the GPMVs from the outside—here, we expect asymmetry to initially exist. As a result, the ΔGmembrane energetic cost of channel opening is lowered because asymmetric LPC incorporation drives membrane curvature changes that favor opening of the MscL pore (Perozo et al., 2002; Yoo and Cui, 2009). Over longer timescales, we expect LPC to be equilibrated between leaflets, and the LPC-mediated reduction of activation sensitivity vanishes (Figure 2-figure supplement 7B). Similarly, we exclude the contribution from spontaneous curvature when considering experiments with C12E8 and polymer compared to lipid-only membranes because the additive’s distribution is likely equilibrated between bilayer leaflets during the patch clamp experiments. Equilibration is facilitated by the hour-long incubation times and perhaps by enhanced permeability of GPMVs (Skinkle, Levental, and Levental 2020). Such equilibration is also consistent with fast equilibration times of poloxamer observed using supported lipid bilayers (Kim et al. 2020). We conclude that membrane asymmetry is not a substantial factor for ΔGmembrane differences between membranes with and without polymer.
In the Discussion, we reason that the magnitude of ΔΔGmembrane arising from changes in KA and Kc is smaller than the differences in γΔA between membrane compositions (∼50-79 KbT). Here we provide order of magnitude estimates for ΔΔGmembrane from literature and our results. The cost of a midplane bilayer deformation due to channel opening is small (< 1 KbT) and scales with Kc1/2, and the cost to deform the bilayer thickness is moderate (∼10 KbT) and scales with Kc1/4 * KA3/4 (Ollila et al., 2011; Wiggins and Phillips, 2005). The former term is small enough to omit from this analysis. From Figure 2E,F, KA and Kc decreased by ∼3.8x and ∼2.3x, respectively, in the presence of high concentrations of P124; we approximate the ΔΔGmembrane term is reduced ∼3.4x to ∼3 KbT, much smaller than our 50-79 KbT estimate for ΔΔGexp.
Acknowledgements
This study was supported by the Air Force Office of Scientific Research YIP (FA9550-19-1-0039 P00001 to NPK) and the National Science Foundation (DMR-2145050 to NPK). This work was funded in part by the Chicago Biomedical Consortium with support from the Searle Funds at The Chicago Community Trust (to NPK and SMC). The authors acknowledge partial support from NIA/NINDS, National Institutes of Health (R01NS114413 to SMC), the Army Research Office (W911NF-22-2-0246), and the Department of Chemistry, College of Liberal Arts and Sciences, University of Illinois Chicago. MLJ was supported by Grant No. T32GM008382 from the National Institute of General Medical Sciences and the American Heart Association Predoctoral Fellowship under Grant No. 20PRE35180215. MJL was supported by NU’s Molecular Biophysics Training Program through NIH NIGMS (5T32 GM008382). PGD was supported by NIH NIDDK (1R56DK119709-01, 1R01DK123463-01). This work was supported by the Northwestern University Sanger Sequencing Facility. This research was supported in part through the computational resources and staff contributions provided for the Quest high performance computing facility at Northwestern University which is jointly supported by the Office of the Provost, the Office for Research, and Northwestern University Information Technology.
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