Figures and data
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(A) tSNE of the cells of Pink1P399L knock-in mutants (5 days old). Cell types are labeled with colors indicating the number of deregulated genes compared to control. EG are encircled and labeled. (B-B”) (B) SUM intensity of confocal images of fly brains (5 ± 1 days old) stained with anti-GFP (Green) and anti-Brp (Magenta), where anti-GFP marks EG and anti-Brp marks presynaptic sites of the antennal lobes. Scale bar: 20 µm (B’) SUM intensity of confocal images of control flies vs control flies 24 hours after ORNs severing. (B”) SUM intensity of confocal images of Pink1KO-WS vs Pink1KO-WS flies 24 hours after ORNs severing. (C) Quantification of GFP intensity with the glomeruli of the antennal lobe area in 5 ± 1 days old flies (as in B) relative to the control. ANOVA with Dunnet’s multiple comparison test, * is p<0.05, ** is p<0.01, *** is p<0.001. Bars: mean ± SD; points are individual animals N≥13 per genotype. (D-D”) SUM intensity of confocal images of fly brains (5 ± 1 days old) stained with anti-GFP (Green) and anti-Brp (Magenta), where anti-GFP marks EG and anti-Brp marks presynaptic sites of the antennal lobes. Scale bar: 20 µm. (D’) SUM intensity of confocal images of w1118 with Pink1 downregulation in EG. (D”) SUM intensity of confocal images of Pink1KO-WSwith Pink1 rescued in EG. (E) Quantification of GFP intensity within the glomeruli of the antennal lobe area in 5 days old flies (as in D) relative to the control. ANOVA with Tukey’s multiple comparison test, * is p<0.05, ** is p<0.01, *** is p<0.001. Bars: mean ± SD; points are individual animals N≥10 per genotype.
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(A) Representative ERG traces: ON peak is highlighted by the arrow. (B) Normalized ON peak response of flies (5 ± 1 days old). ANOVA with Tukey’s multiple comparison test, * is p<0.05, ** is p<0.01, *** is p<0.001. Bars: mean ± SD; points are individual animals N≥11 per genotype. (C-C”) (C) Maximum projection confocal image of control and Pink1KO-WS in Mushroom Bodies (MB) of aged flies (22 ± 2 days old), stained with anti-TH (cyan) and anti-DLG (magenta) antibodies, DLG is used to mark post-synaptic site of MB. The black and white image is the middle Z-plan within the region of interest of the MB(ROI, yellow), it is used to represent the thresholded TH area (white). Scale bar: 20 µm. (C’) Maximum projection confocal image of w1118 with Pink1 downregulation in EG. (C”) Maximum projection confocal image of Pink1KO-WS with Pink1 rescued in EG. (D) Quantification of dopaminergic synaptic area within MB in aged flies (22 ± 2 days old). ANOVA with Tukey’s multiple comparison test, * is p<0.05, ** is p<0.01, *** is p<0.001. Bars: mean ± SD; points are individual animals N≥12 per genotype.
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(A) Scheme of cell-type specific transcriptomics. Panel created using BioRender.com/p56u250. (B) Scaled gene expression of representative genes for EG and neurons after sorting EG or neurons using the protocol described in figure A. Figure generated using R studio (R Core Team, 2022). (C) Differentially expressed genes in EG in Pink1KO-WScompared to control flies, plotted according to their Log2 Fold change and the -Log10 of the adjusted p-value. Intercept in RED (-Log10 adjusted p-value = 4.31). *Two data points are outside the boundaries of the plot. (D) ERG ON peak value differences to Pink1KO-WS (red) flies (5 ± 1 days old) of Pink1KO-WS flies (5 ± 1 days old) with DEGs downregulated, or upregulated, specifically in EG. ON peak value are expressed as the difference to Pink1KO-WS. ANOVA with Dunnett’s test, * is p<0.05, ** is p<0.01, *** is p<0.001. Bars: mean ± SD; points are individual animals N≥3 per genotype. *One data point is outside the boundaries of the plot.
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(A-A’) (A) Representative ERG traces. (A’) Representative ERG traces of genes Pink1KO-WS flies with Vps13, mon1, and rab7 downregulated in EG (B) Normalized ON peak response of flies (5 ± 1 days old). Kruskal-Wallis with Dunn’s multiple comparison test, * is p<0.05, ** is p<0.01, *** is p<0.001. Bars: mean ± SD; points are individual animals N≥8 per genotype. (C) Maximum projection confocal image of control and Pink1KO-WS in Mushroom Bodies (MB) of aged flies (22 ± 2 days old), stained with anti-TH (cyan) and anti-DLG (magenta) antibodies, DLG is used to mark post-synaptic site of MB. The black and white image is the middle Z-plan within the region of interest of the MB(ROI, yellow), it is used to represent the thresholded TH area (white). Scale bar: 20 µm. (D) Quantification of dopaminergic synaptic area within MB in aged flies (22 ± 2 days old). ANOVA with Dunnett’s multiple comparison test, * is p<0.05, ** is p<0.01, *** is p<0.001. Bars: mean ± SD; points are individual animals N≥13 per genotype.
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