Abstract
Lumen formation is a key process during the morphogenesis of tubular organs such as the vertebrate vascular network. At the cellular level, lumen formation can be achieved by cell shape changes or cell rearrangements. We have previously shown that such cell rearrangements are driven by oscillating membrane protrusions, called junction-based lamellipodia (JBL), which provide a ratchet mechanism driving convergent cell movements to connect local lumens and generate vascular patency. By performing in vivo time-lapse imaging at high spatiotemporal resolution, we have analyzed the cytoskeletal and junctional dynamics, which underlie JBL formation and function. We show that JBL formation requires the activity of the F-actin nucleation complex Arp2/3. We further show that a novel junction is formed at the distal end of the JBL from a pool of VE-cadherin originating from outside the initial JBL area.
Subsequently, proximal and distal junctions merge and fuse, a process driven by actomyosin contractility. Prior to this fusion we observe a specific recruitment Myl9 within the interjunctional space. Furthermore, inhibition of actomyosin contractility abrogates junctional merging. Taken together, our analyses demonstrate that JBL constitute a module, which by alternate generation of pushing forces (JBL formation) and pulling forces (junctional merging) provide the physical means of endothelial cells to elongate and to rearrange and thereby generate a continuous vascular lumen.
Introduction
Vascular networks are formed by an array of morphogenetic processes, such as sprout outgrowth, anastomosis and pruning, which depend on the tight coordination of dynamic endothelial cell behaviors (Betz et al., 2016; Ellertsdóttir et al., 2010; Phng, 2018; Schuermann et al., 2014). In order to transport blood, the newly formed blood vessels need to form a continuous lumen. Studies of lumen formation in mammalian and zebrafish embryos have revealed that the early blood vessels of the trunk are formed by different morphogenetic processes. The larger axial vessels, the dorsal aorta (DA) and posterior cardinal vein (PCV), form their lumens between coalescing endothelial cells, a process referred to as cord hollowing (Ellertsdóttir et al., 2010; Jin et al., 2005; Strilić et al., 2009; Zeeb et al., 2010). In vivo time-lapse analyses of the formation of the intersomitic vessels (ISV) and the dorsal longitudinal anastomotic vessels (DLAV) in zebrafish have revealed the existence of two alternative mechanisms of lumenization. In one mechanism, called transcellular lumen formation, the luminal cell membrane invaginates into the cell. This cell hollowing process is driven by blood pressure and results in so-called seamless tubes, which contain a lumen surrounded by single cells (Betz et al., 2016; Gebala et al., 2016; Herwig et al., 2011 ; Lenard et al., 2013; Phng and Belting, 2021). Alternatively, local lumens, which are formed between individual cells within a sprout can be fused by cell rearrangements (Herwig et al., 2011; Sauteur et al., 2014). Such endothelial cell rearrangements generate multicellular tubes (Betz et al., 2016; Phng and Belting, 2021). Studies examining lumenization of ISV and DLAV have shown that transcellular lumen formation requires blood pressure and that, in the absence of blood flow, endothelial cell rearrangements appear to be the default mechanism of vascular tube formation (Herwig et al., 2011; Lenard et al., 2013).
Endothelial cells are very motile - they can move within the angiogenic sprout and also in patent vessels in the presence of blood flow (Blum et al., 2008; Franco et al., 2016; Jakobsson et al., 2010). A dynamic balance between endothelial cell-cell adhesion and plasticity allows angiogenic sprouting while maintaining the endothelial seal. Previous analysis on blood vessel formation and anastomosis in zebrafish has shown that junctional remodeling is central to many aspects of morphogenetic endothelial cell-cell interactions. In particular, the adhesion molecule VE-cadherin (Cdh5) is essential for coordinated cell shape changes during multicellular tube formation, as loss of VE-cadherin was shown to inhibit cell rearrangements (Sauteur et al., 2014). Furthermore, rather than supporting a passive role of VE-cadherin, which is consistent with the maintenance of vascular integrity, an active force-generating function for VE-cadherin in this process was suggested (Sauteur et al., 2014). By performing in vivo high-resolution time-lapse imaging and genetic analyses, we have shown that endothelial cells use oriented, oscillating junction-based lamellipodia (JBL) to move over each other, which thus provide the physical means for cell rearrangements to drive multicellular tube formation (Paatero et al., 2018).
To better understand the cellular and molecular mechanisms of JBL function we have undertaken a detailed analysis of junctional and actomyosin dynamics. Taken together, our data show that JBL provide forward movement by generating pushing and pulling forces at the poles of junctional rings thereby elongating the cell and promoting cell rearrangements.
Results
Junction-based lamellipodia generate luminal connectivity
Lumenization of vascular sprouts is central to blood vessel formation. Although different morphogenetic mechanisms of vascular tube formation have been described, in vivo analysis in zebrafish embryos has established cord hollowing as the default mechanism of blood vessel formation in the absence of blood flow (Herwig et al., 2011; Lenard et al., 2013). During the cord hollowing process neighboring cells form local lumens which become interconnected via cell rearrangements (Andrew and Ewald, 2010). To visualize the relationship between JBL dynamics and endothelial cell rearrangements, we used two different transgenic reporters: EGFP-ZO1 to label EC junctions and UCHD-mRuby to label F-actin in junctions as well as in JBL protrusions (Figure 1a, b). Time-lapse analysis revealed that JBL formed in front of elongating junctions as the junctional rings move towards each other. As a consequence of these movements, the junctional rings merge and the converging cells form a new contact leading to the fusion of the previously separated luminal pockets (Figure 1c, d) (Herwig et al., 2011). In order to visualize the fusion of such luminal pockets we followed the localization GFP-Podxl, which labels the apical cell membrane, together with F-actin reporter UCHD-mRuby2, to delineate endothelial cell-cell junctions and F-actin base protrusions (Figure 1c). Time-lapse recordings revealed that fusion of apical membrane compartments occured within a few hours upon initiation of DLAV formation and was associated with junctional rearrangements between the three associated cells (Figure 1c, d and video s2). In agreement with our previous work, higher temporal resolution imaging showed that cell junctions formed transient F-actin-based protrusion (JBL) at the pole with respect to junctional ring elongation (Figure 1 c, d and video s1, and video s3) (Paatero et al., 2018).

JBL generate luminal connectivity.
a: High-resolution time-lapse video (video s1) of EGFP-ZO1 and mRuby2-UCHD during junctional rearrangements. Yellow asterisks point to JBL. Yellow doubleheaded arrows indicate the distance between the junction and the dorsal end of the DLAV. b: Plots displaying the signal intensities of EGFP-ZO1 and mRuby2-UCHD, along the white lines, at different time points, during several JBL cycle. c: still images of time-lapse video (video s2) showing EGFP-Podxl1 and mRuby2-UCHD during luminal fusion, starting at approximately 32 minutes. The leading edges of the converging junctions are indicated by white arrowhead. Yellow arrowheads point to JBL. scale bar: 10 μm. d: Graphic depiction of blood vessel lumenization by cell convergence. Top: At first, cells 1 and 3 and cell 2 and 3, respectively, are forming cell-cell interfaces (cell junctions: green), which enclose local lumens (apical membrane: purple). Middle: JBL drive convergent cell movements, which lead to the formation of a novel cell contact (cells 1 and 2) and the merging of the two lumens into one (bottom). Graphic depiction of a lumenized DLAV, displaying the multicellular architecture. e: still images of time-lapse video s3 showing the oscillatory behavior of JBL (yellow arrowhead) during DLAV formation (30hpf). The white dashed line surrounds the UCHD-labeled JBL domain. scale bar: 5μm. A schematic representation of the time-lapse video is shown in the bottom panel.
JBL form distal junctions by de novo recruitment of VE-cadherin
We have previously shown that JBL are oscillating protrusions, which drive junction elongation and thereby cell rearrangements during tube formation. A salient feature of JBL is the formation of a distal junction in front of the JBL (Paatero et al., 2018).
To gain more insight into the dynamics of distal junction formation, we compared the distribution of F-actin (Ruby-UCHD) with that of VE-cadherin (VE-cad-Venus) and ZO1 (EGFP-ZO1), respectively (Figure 2). Time-lapse experiments revealed distinct and dynamic localization of these proteins. During early phases of JBL formation VE-cadherin was diffusely distributed throughout the protrusion and accumulated in aggregates leading to a characteristic “double junction” pattern at the distal tip of the junctional ring (Figure 2a and video s4). Compared to VE-cadherin and ZO1 the early demarcation of F-actin at proximal and distal junction was less sharp (Figure 2 b, c and videos s5, s6). However, early aggregates of VE-cadherin and ZO1 were always positive for Ruby-UCHD, showing that these three proteins were present from the onset of distal junction formation. At subsequent stages, as the distal becomes more mature, ZO1 and VE-cadherin at the proximal junction were maintained, while the Ruby-UCHD signal started to fade (Figure 2 c-e).

JBL form new junctions at the distal end of the membrane protrusion.
a: A (I)Time-lapse video (video s4) of VE-cad-Venus imaged at rate of 1stack/12s during distal junction formation. New distal junctions emerge in clusters at the distal end of the JBL. Ve-cad is diffusely localized in early JBL, while it accumulates in big foci at later time points. scale bar: 2 μm. (II) Three-level thresholding of a grayscale image. The original grayscale image (I) is segmented into three intensity levels: background (white), intermediate signal (green), and strong signal (blue). (III) Tracking of VE-cad aggregates from 12s to 24s. Particle trajectories are shown as arrows from 12 s to 24 s, with arrowheads indicating the direction of movement. Dashed circles highlight dynamic aggregation of VE-cad at distal junctions. White arrowheads point distal the junction. Yellow dashed line highlights the proximal junction. b: Still-images of time-lapse video showing mRuby2-UCHD and VE-cad-Venus during JBL (0s) and distal junction formation (30s). (video s5). The dashed line encircles the protrusion. White arrow heads point distal junction foci at the distal tip of the protrusion. scale bar: 2 μm. Similar observations were made in 15 videos. c: Still images of time-lapse video showing EGFP-ZO1 and mRuby2-UCHD during the presence of proximodistal junction. After distal junction formation, F-actin gradually diminishes from proximal junction and interjunctional space, while maintaining strong localization at the distal junction. Similar observations were made in 5 videos. White arrowheads confine UCHD expression domain. scale bar: 2 μM. Yellow and white arrowheads highlight proximal and distal junction respectively. d,e: Still image of EGFP-ZO1 and mRuby2- UCHD (D), and mRuby2-UCHD and VE-cad-Venus (E) respectively, in proximodistal junction. (video s6) While junctional proteins localize more strongly at the proximal junction, respect to the new, immature distal junction, F-actin faintly localizes at the proximal junction and strongly at the distal. Similar observations were made in 10+11 videos. Yellow and white arrowheads highlight proximal and distal junction respectively scale bar: 2 μm. f: Schematic representation the spatiotemporal distribution of VE-cad, F-actin and ZO1 during formation of the distal junction in top and side view: Initially VE-cad appears diffusely dispersed throughout the membrane protrusion. Distal junction foci form at the distal side of the lamellipodia. Actin network along the distal junction. Finally, the junctional actin network along the proximal junction dissappears, as depicted by orange arrow heads.
Formation of the distal junction may occur in different ways. On one hand, it may form by a local junctional disassembly, followed by a reaggregation at the distal end of the JBL. This would essentially consist of a junctional rearrangement process. On the other hand, the distal junction may form de novo by recruitment of VE-cadherin from pools outside of the proximal junction. In order to distinguish between these scenarios, we performed color conversion experiments (Supplementary Figure 1 and video s7). Pools of photoconvertible VE-cadherin (Cdh5-mClav2) were differentially labeled by exposure to UV light within a narrow region of interest at the pole of the junctional ring (Supplementary Figure 1a), which resulted in efficient green-to-red conversion of fluorescence (Supplementary Figure 1 b). When we followed subsequent JBL dynamics over time, we noted that converted (red) VE-cad was absent from the protrusion as well as from the distal junction (Supplementary Figure 1c and video s7. representative of different 5 experiments). Instead, the distal junction contained nonconverted VE-cadherin. This indicates that the Ve-cad pool residing in the proximal junction does not substantially contribute to the JBL nor the distal junction but rather that the distal junction is formed de novo by recruitment of VE-cadherin from pools outside the proximal junction.
Arp2/3 complex dynamics spatiotemporally correlates with JBL formation
Membrane protrusions emerging from endothelial junctions are commonly seen in developing and newly formed blood vessels in the zebrafish embryo. Cell culture experiments, using human umbilical cord endothelial cells (HUVEC), have shown that such lamellipodial structures can control monolayer integrity and vascular permeability (Alves et al., 2018; Martinelli et al., 2013). In particular, so-called junction-associated intermittent lamellipodia (JAIL) are prominent in sub-confluent HUVEC, where they serve to repair junctional gaps (Taha et al., 2014). In contrast to JAIL, JBL are highly polarized relative to the vessel axis and they drive cell rearrangements rather than maintaining vascular integrity (Paatero et al., 2018). However, both lamellipodial structures are similar in their emergence from and association with endothelial cell junctions.
JAIL formation appears to be triggered by a local reduction in junctional tension and requires the activation of the ARP2/3 complex. To examine the role of the Arp2/3 complex in JBL formation, we used a reporter expressing Arpc1b-Venus fusion protein in the zebrafish vasculature. Arpc1b is an integral subunit of the active Arp2/3 complex and has previously been used as a reporter to localize Arp2/3 activity in endothelial cells (Malchow et al., 2024; Padrick et al., 2011). Time-lapse analyses showed a discrete spatiotemporal deployment of Arp2/3 at the leading edge of the forming JBL (Figure 3). Imaging JBL over several oscillation cycles revealed that Arp2/3 accumulation coincided with the initiation and the elongation of JBL, while it disappeared at the end of each JBL cycle (Figure 3a and video s8). Comparison with ZO1 showed that Arp2/3 localized distally with no overlap within the proximal junction (Figure 3a). When we imaged Arp2/3 together with mRuby2-UCHD at higher temporal resolution (30s/frame), we observed that Arp2/3 was maintained at the leading edge of the membrane protrusion (Figure 3b, c and video s9). Taken together, these data show that Arp2/3 specifically marks the distal edge of the JBL during formation and elongation (Figure 3d).

Arp2/3 localization oscillates at the distal end of JBL.
a: Time-lapse video (video s8) of Arpc1b-Venus and ZO1-tdTomato at about 30hpf, showing deposition of Arp2/3 at the distal side of the junctional ring during 2 JBL cycles. scale bars: 2 μm. b: Time-lapse video (video s9) of Arpc1b-Venus and mRuby2-UCHD during a JBL event. scale bar: 2 μm. c and c’: Plots showing the average intensity of Arpc1b-Venus and mRuby2-UCHD along rectangular ROIs drawn along the JBL at 30 and 60 seconds, respectively. scale bar: 2 μm d: Schematic model of top and side view of spatiotemporal localization of ARP2/3, F-actin and ZO1 during JBL formation and extension for 1.5 JBL cycle.
As the above findings suggest that Arp2/3 is involved in JBL formation, we interfered with Arp2/3 function by pharmacological inhibition using CK666 (Hetrick et al., 2013). We used acute treatments to avoid secondary effects and performed live-imaging on rearranging endothelial cell junctions. Application of 0.2 mM CK666 at 32 hpf completely disrupted junctional Arp2/3 localization within 30 min. (Supplementary Figure 2). Analysis of F-actin organization revealed an increase of filopodia emanating from the junction in the area, which usually was occupied by JBL (Figure 4a-c and videos s10, s11). The abundance of these filopodia prevented the localization of JBL at the junctional poles - an observation consistent with previous cell culture studies (Henson et al., 2015), which suggests that filopodia are formed instead of lamellipodia in the absence of Arp2/3 activity. To verify that filopodia formation was caused by Arp2/3 inhibition, we performed wash-out experiments. Removal of the inhibitor from the medium effectively stopped filopodia formation at endothelial cell junctions, thus reverting the CK666 induced phenotype (supplementary Figure 3 and videos s12, s13). To test consequences of the loss of Arp2/3 activity on cell rearrangements, we measured the speed of junctional elongation in control and CK666 treated embryos. By imaging ZO1 labeled junctions over 1 hour we found that the speed of junction elongation was strongly reduced from an average of 8μm/h to 3μm/h (Figure 3 d,e and videos s14, s15). Taken together, the results show that JBL formation depends on Arp2/3 function and that the absence of Arp2/3 activity leads to a strong impairment of endothelial cell rearrangements during blood vessel formation.

Arp2/3 activity is required for junctional elongation and JBL formation.
a: Still-images from time-lapse videos (videos s10, s11) of JBL labelled with EGFP-UCHD, at around 32hpf, in the presence of DMSO (1%) or 1h incubation with CK666 (200μM). Similar observations were made in 10 videos. scale bars: 5 μm. Similar observations were made in more than 12 videos. b: Quantification of number of filopodia/JBL in DMSO (1%), n=10 JBL and CK666 (200μM), n=10 JBL events. Unpaired t-test was used for statistical analysis. (p-value < 0.0001). c: Quantification JBL filopodia length in DMSO (1 %), n=15 JBL and CK666 (200 μM), n=34 JBL events. d: Still images from time-lapse videos (videos s14, s15) of a ZO1-tdTomato labeled junctional rings in the presence of DMSO (1%), CK666 (200μM). Top panels t =0 and bottom panels after 1h incubation. scale bars: 10μm. e: Quantification of the junctional elongation velocity in DMSO (1%), n=21 junctions (10) embryos) and CK666 (200 μM), n=24 (10 embryos). Dotted line indicated no movement observed, black lines are medians. Unpaired t-test was used for statistical analysis. (p-value = 0.0047).
Proximal and distal junctions resolve by junctional merging and fusion
The appearance of “double junctions” (consisting of a proximal and a distal junction) is a distinctive junctional feature observed in JBL. Their spatiotemporal dynamics suggest that they represent part of the mechanism by which JBL promote junction elongation. Live-imaging revealed a cyclic turnover between the two junctional states: single junction and double junction pattern. Time-lapse imaging of VE-cad-Venus at high temporal resolution showed that this turnover is mediated by the cyclic formation of the distal junction followed by the merging and fusion of the proximal and distal junctions (Figure 5a and video s16).

MLC is enriched at the junction poles.
a: Stills from time-lapse video (video s16) of VE-cad-Venus during junctional merging. Blue and red arrowheads point to the proximal and distal junction, respectively. The two junctions are gradually moving closer until they merge. Similar observations were made in 13 videos. scale bars 2 μm. b: Confocal image of ISV and DLAV of Myl9b-mCherry and ZO1-EGFP at around 32 hpf. Yellow arrowheads point to JBL. Dashed lines underline the distal expression domain of Myl9b-mCherry at the junctional pole. scale bars: 2 μm. c: Confocal image of DLAV and ISV immunofluorescence against GFP (green), VE-cad (magenta) and ZO1 (cyan) of an embryo expressing Myl9a-GFP at around 32hpf in a case of mosaic expression: the top cell has stronger Myl9a-GFP expression than the bottom cell (as in the schematic). c’, c’’, c’’’, c’’’’ dashed squares delimitate JBL regions of the two cells. d: quantification of Myl9-EGFP average intensity the yellow dashed squares ROIs (I) and (II) drawn on the JBL domain. The error bars indicate standard deviation between pixel intensities within the square (area of interest). e: Still images of a time-lapse video s17 showing Myl9a-GFP and mRuby2-UCHD localization during JBL formation during anastomosis of the PCeV at around 60 hpf imaged with spinning disc. White dashed lines delineate the JBL region. Yellow and white arrowheads point to the proximal and distal junction, respectively. Myl9-GFP is enriched inside the lamellipodia and localizes at the distal junction at later time points. scale bars: 2 μm.
Myosin light-chain localization correlates with junctional merging
The cyclic junctional pattern in JBL suggests that it may represent a physical ratchet mechanism, which drives junction elongation. Therefore, we wanted to explore whether junctional mergence could be driven by actomyosin contractility. Increase in tension is accompanied by a recruitment of non-muscular myosin to the actomyosin cytoskeleton (Munjal et al., 2015). By coupling fluorescent reporters the myosin regulatory light chain dynamic changes of actomyosin tension can be visualized in vivo at subcellular resolution (Fernandez-Gonzalez et al., 2009). To monitor the spatiotemporal distribution of actomyosin contractility during JBL cycle, we utilized myosin regulatory light chain (MLC) (Myl9a-GFP and Myl9b-Cherry) as reporters for non-muscular myosin II (NMII) activity (Lancino et al., 2018). Myl9 accumulated along the junctions but was strongly enriched in JBL at both ends of the junctional ring (yellow arrowheads in Figure 5b).
During cell rearrangements JBL are formed at each pole of the junctional ring in a complementary fashion: each JBL is formed by one of the interacting cells corresponding to the forward orientation with respect to cell movement (Paatero et al., 2018)(see schematic in Figure 5c). To test whether Myl9 accumulation corresponds to the forward orientation of the JBL, we analyzed rare mosaic situations in which Myl9a-GFP was expressed in only one of the partnering cells. Indeed, we observed high levels of Myl9a-GFP in JBL formed by the high-expressing cell pointing into the forward direction of the elongating junction (Figure 5c-d).
Vascular tube formation by cell rearrangements has also been described in other vascular beds. We turned to the posterior cerebral vein (PCeV), which is generated by JBL-driven cell rearrangements converting the initial tube architecture from unicellular to multicellular (Lenard et al., 2013). When we compared Myl9a-EGFP distribution to mRuby2-UCHD, we found that the former localized within the JBL adjacent to the forming distal junction of the JBL (see yellow arrowheads in Figure 5e and video s17).
In order to gain a better understanding how actomyosin contractility may drive junctional mergence, we imaged the distribution of Myl9 at high spatiotemporal resolution. We first used VE-cadherin-EGFP to label proximal and distal junctions as spatial landmarks and thus demarcate the area of interest for the quantification of Myl9b-mCherry in space and time (Figure 6a, b, Supplementary figure 4, and videos s18 - s22). We defined three areas - proximal junction, interjunctional and distal junction and quantified Myl9b-mCherry at two time-points (0” and 45”) at the onset and during junctional mergence, respectively (Figure 6b). These quantifications reveal a redistribution Myl9 from the proximal and distal junctions towards the interjunctional space (Figure 6c). This increase indicates a strong recruitment of Myl9 and a concomitant increase of actomyosin contractility within the area between the proximal and distal junctions.

Myosin light-chain dynamics correlates with junctional merging.
a: Still pictures of time-lapse video (video s18) of VE-cad-EGFP (Cdh5ΔC-EGFP) and Myl9b-mCherry (shown in “fire”-LUT) during junctional merging. Blue dashed lines confine the applied mask. Yellow and white arrowheads point to the proximal and distal junction, respectively. Blue and black arrowheads point to MLC accumulation at proximal and distal junction. Similar observations were made in six videos. Gray arrowheads point to newly recruited inter-junctional Myl9-mCherry. Similar observations were made in nine videos. b: Dashed blue lines delimitate 3 regions: proximal junction region (P), distal junction region (D) and inter-junctional space (I). c: Plot of average intensity of Myl9b-mCherry in the three regions over time. Signal intensities have been corrected for background levels, which has been evaluated as average of average intensities in five rectangles in the cytoplasm. scale bars: 2 μm.
Actomyosin contractility is required for junction elongation and junctional mergence
In order to assess the role of actomyosin contractility in junction elongation more directly, we used the Rock inhibitor Y-27632 (Uehata et al., 1997)and measured the length of junctional rings over 60 minutes. Rock inhibition strongly inhibited junction elongation compared to DMSO controls (Figure 7a, b and videos s23, s24). To test whether the lack of junction elongation under Rock inhibition may be caused by defects in JBL function, we performed acute short-term Y-27632 treatment and performed live-imaging over 30 minutes to image JBL dynamics during reduction of actomyosin contractility - with a focus on the merging of proximal and distal junctions. To this end, we imaged 20 (Y-27632) and 13 (DMSO) events of junctional merging, respectively, and tracked individual interjunctional distances over time (Figure 7c-e and videos s25, s26). Inhibition of actomyosin contractility led to a strong inhibition of junctional mergence, ranging from a reduction in speed to a complete block in junctional mergence. This blockage in junctional mergence was reflected by the overall increased occurrence of “double junctions” under Rock inhibition (20 (Y-27632) vs 13 events (DMSO-control) in 18 videos). Taken together, these results show that high levels of actomyosin contractility reside within interjunctional space and that these contractile forces are responsible for junctional mergence. Furthermore, these data suggest that JBL formation together with junctional mergence are the driving force of junctional elongation and endothelial cell rearrangements during angiogenic blood vessel formation.

Actomyosin contractility drives junctional conversion.
a: Still images from time-lapse videos (videos s23 and s24) EGFP-UCHD labelled junctional rings around 32 hpf, in the presence of DMSO (1%) or Y-27632 (45 μM). Top panels t = 0 and bottom panels 60 min incubation. scale bar: 10μm. b: Quantification of the junctional elongation velocity in DMSO (1%), n =11 junctions and Y-27632 (45 μM), n = 8. Dotted line indicated no movement observed, black lines are medians. Unpaired t-test was used for statistical analysis. p-value = 0.0081. c: Stills images from timelapse videos (videos s25 and s26) VE-cad-Venus labelled proximodistal junction, during junctional merging in the presence of DMSO (1%) or Y-27632 (75 μM). White and yellow arrowheads are pointing distal and proximal junctions respectively. scale bar: 2μm. d: Tracking of proximal-distal junction distance over time of individual junctional merging events in DMSO (1%) (green lines), and Y-27632 (75 μM) treated embryos (magenta lines). e: Quantification of the persistence of proximal and distal junction in DMSO (1%), n=13 junctional merging events and Y27632 (75 μM) n=20. Unpaired t-test was used for statistical analysis. p-value = 0.0027.
Discussion
Lumen formation is key in the formation of tubular organs such as blood vessels. Endothelial cells can use different morphogenetic pathways to generate a lumen, including membrane invagination, cord hollowing or lumen ensheathment (Eberlein et al., 2021; Phng and Belting, 2021). The dorsal longitudinal anastomotic vessel (DLAV) of the zebrafish embryo can be formed by either membrane invagination or cell rearrangements, which result in unicellular and multicellular tubes, respectively (Betz et al., 2016; Phng and Belting, 2021). Here, we have analyzed the cell rearrangements, which connect small luminal pockets within the initial endothelial rod, thereby generating a continuous lumen in a fully patent vascular tube.
The coalescence of local, extracellular lumens is commonly observed during the cord hollowing process of different biological tubes, including the notochord of Ciona intestinalis, the vertebrate dorsal aorta as well as the neural tube and intestine (Bagnat et al., 2007; Dong et al., 2009; Gladysheva et al., 2021; Jin et al., 2005; Strilić et al., 2009). In those tubular organs, in which lumen coalescence has been analyzed, it was found that it is mainly caused by lumen expansion, which in turn is driven by directed liquid transport and hydrostatic pressure (Bagnat et al., 2007; Lowery and Sive, 2005; Munson et al., 2008; Navis and Bagnat, 2015). In contrast, the lumen coalescence observed in the zebrafish ISV, DLAV and PCeV is accomplished by active cell intercalation. That is, endothelial cells actively elongate their cell-cell junctions until they form novel cell-cell contacts, which allow the connection of the two adjacent lumens.
We have previously shown that endothelial junction elongation is driven by junction-based lamellipodia (JBL) (Paatero et al., 2018). Careful analysis of junctional and cytoskeletal reporters revealed that JBL dynamics can be subdivided into 4 discrete steps: 1) JBL formation, 2) formation of a new, distal junction, 3) junction conversion and 4) junction stabilization (Paatero et al., 2018). Taken together, these studies showed that JBL provide an oscillating ratchet-like mechanism, in which endothelial cells employ F-actin-based protrusions and VE-cadherin-mediated cell-cell contacts to move over each other. JBL thus provide the physical means for cell rearrangements to drive multicellular tube formation.
In this study we have further explored the junctional and actomyosin dynamics to discern how JBL generate the motive force required for junction elongation and cell rearrangements. In essence, our data show that JBL require ARP2/3 dependent Factin polymerization for JBL formation as well as actomyosin contractility to merge the proximal and distal junctions at the end of the JBL cycle. Thus, by sequential deployment of pushing (F-actin polymerization) and pulling (junction merging) forces, JBL promote forward movement of endothelial cells (summarized in Figure 8).

Schematic representation of the molecular mechanism of junction elongation by junction-based lamellipodia (JBL).
JBL formation is initiated by Arp2/3 activation. The JBL is pushed forward by F-actin polymerization. At the distal end a new cell-cell junction is formed. MyosinII is recruited to the interjunctional space. Actomyosin contraction merges the proximal and distal junctions resulting in an overall elongation of the junctional ring. See video s27.
Oscillatory junctional protrusions of endothelial cells have also been described in cultured HUVECs (Cao et al., 2017; Taha et al., 2014). Here, so-called junction-associated intermittent lamellipodia (JAIL) form in similar intervals as JBL. However, differences in junctional dynamics suggest that JAIL and JBL represent related but distinct cellular activities. JAIL formation is thought to be triggerered by local dissolution of endothelial adherens junctions (i.e. by downregulation of VE-cadherin). Subsequently, these protrusions retract EC junctions are re-established (Cao et al., 2017; Taha et al., 2014). In this experimental paradigm, JAIL do not promote endothelial cell movement. JBL, in contrast, provide endothelial motility during blood vessel morphogenesis. Furthermore, formation of JBL is not preceded by a dissolution of EC junctions and a distal junction is formed at the leading edge of the protrusion leading to a “double junction” configuration as an intermediate state. Our studies show that these “double junctions” are an integral part of the cellular mechanism of junction elongation. We have previously shown that JBL are most prominent during multicellular tube formation and become less prevalent and smaller thereafter (Paatero et al., 2018). These salient and distinct features prompted us to adopt the term junction-based-lamellipodia (JBL), in order to differentiate them from JAIL. Although JAIL have also been implicated in endothelial cell migration (Cao and Schnittler, 2019; Cao et al., 2017; Seebach et al., 2021) neither junctional patterns nor junctional dynamics have been analyzed in this context. Thus, JAIL and JBL represent similar but different lamellipodia-like protrusions. JAIL are associated with the maintenance of endothelial integrity, as well as the control permeability and trans-endothelial cell migration, as has been suggested by several publications (Cao et al., 2017; Kipcke et al., 2025; Seebach et al., 2021; Taha and Schnittler, 2014). In contrast, JBL drive cell rearrangements, by step-wise elongation of cell junctions resulting in convergent cell movements.
Lamellipodial structures resembling JBL, displaying double junctions, have recently been described in the oak leaf-shaped endothelial cells of dermal lymphatics in the mouse (Schoofs et al., 2025). Here, the double junctions are thought to regulate endothelial shape and in particular to stabilize the interendothelial cell overlap, which is important to control the interstitial fluid transport.
Our photoconversion experiments (see Supplementary Figure 1) show that the distal junction is formed de novo from VE-cadherin pools originating from outside the existing (proximal) junction. During distal junction formation, we observe that VE-cadherin forms clusters resembling spot-junctions observed in the context of organ morphogenesis in other systems. Consistent with our observation such spot-junctions have been shown to be important in the formation of contractile F-actin fibers in these systems (Lecuit et al., 2011). While we are currently not able to monitor actin flow in our experimental in vivo system, our observation that the formation of the distal junction coincides with the formation of a distal F-actin belt is consistent with a clutch mechanism, in which transligation of VE-cadherin triggers reorganization of the cortical actin cytoskeleton similar to what has recently been described in cell culture studies (Noordstra et al., 2023). Furthermore, our previous findings from zebrafish cdh5 null mutants or embryos expressing a VE-cadherin protein (VE-cadΔCT) lacking the β-catenin binding site show that VE-cadherin mediated cell-cell interactions as well as VE-cad/F-actin interaction are important for JBL-driven junction elongation (Paatero et al., 2018; Sauteur et al., 2014).
The cell motility-promoting activity of VE-cadherin during tube formation may be quite unique, considering that in most studies cadherins have been described to stabilize epithelia, limit cell motility and to regulate contact inhibition of locomotion (Campàs et al., 2024; Maître and Heisenberg, 2013; Noordstra et al., 2023) Cadherin-based cell interactions have been shown to be essential for dynamic cell movements in several morphogenetic processes (Friedl and Mayor, 2017; Mayor and Etienne-Manneville, 2016). In the case of collective border cell migration during Drosophila oogenesis and migration of primordial germ cells in zebrafish, cadherins have been shown to provide traction for collective and single cell migration, respectively (Blaser et al., 2006; Cai et al., 2014).
A salient feature of JBL is their appearance at both ends of each rearranging cell. This bipolar activity causes the cells to elongate in both directions and rearrange rather than to migrate. Furthermore, and in contrast to lamellipodia-driven mechanisms of cell migration, the domain of actomyosin contractility is confined within the interjunctional area (between distal and proximal junctions, see Figures 6 and 8). This suggests that the restricted area of contractility is not only demarcated by the proximal and distal junctions, but that these junctions act as insulators to segregate compartments of different actomyosin tension along the cellular interface. We propose that this insulator function is essential to permit junction elongation.
In this study, we have investigated the cellular and molecular basis of force generation in JBL. Through detailed analysis of junctional, cytoskeletal, and regulatory proteins, we uncover a biphasic mechanism involving alternating protrusive and contractile forces. Notably, and in contrast to classical paradigms of cell migration, we show that actomyosin contractility is spatially restricted to a narrow zone at the junctional pole during endothelial cell movement. Together, our findings reveal a novel mechanism of cell rearrangement during vascular cord hollowing. JBL serve as localized modules that generate both protrusive and contractile forces during junctional remodeling and cell elongation. Moreover, JBL-localized junctions may act as insulators, spatially confining actomyosin tension to the junctional pole.
Material and Methods

Lead contact
Further information and request for resources and reagents should be directed and will be fulfilled by the Lead Contact; Heinz-Georg Belting (heinz-georg.belting@unibas.ch).
Materials availability
Materials and zebrafish lines generated and used in this study are available upon request to the lead contact.
Fish maintenance and stocks
Zebrafish (Danio rerio) were maintained according to FELASA guidelines (Aleström et al., 2020). All experiments were performed following institutional and ethical welfare guidelines and animal protocols in accordance with federal guidelines approved by the Kantonales Veterinäramt of Kanton Basel-Stadt (1027H, 1014HE2, 1014 G). Breeding and embryo collection were done according to standard protocols (Westerfield, 2007). Pain, distress, and discomfort were minimized as much as possible.
The following zebrafish lines were used in this study:


Sex was not considered in this study because zebrafish embryos used for the experiments were at developmental stages prior to sex differentiation. Therefore, the sex of the embryos was not determined or relevant to the outcomes.
Live imaging of zebrafish embryos
In DLAV experiments, zebrafish embryos between 30 to 32 hpf were dechorionated and anaesthetized with 0.16mg/ml (1×) tricaine methanesulfonate (Sigma). The embryos were selected for presence of fluorescence and mounted into microwell dishes within 0.55% low-melting-point agarose (ROTI) and covered with E3 buffer containing 1× tricaine. In PceV experiments, transgenic embryos selected for presence of fluorescence were anaesthetized in 1 × tricaine (0.08%) and mounted in a 35 mm glass-bottom Petri dish (0.17 mm, MatTek), using 0.7% low melting agarose (Sigma) containing 0.08% tricaine and 0.003% 1-phenyl-2-thiourea (PTU; Sigma-Aldrich). The embryos were mounted into microwell dishes within 0.55% low-melting-point agarose (ROTI) and covered with E3 buffer containing 1 × tricaine.
A Leica SP5 confocal microscope with a 40x water immersion objective was used for live-imaging experiments. High spatiotemporal resolution time-lapse images were acquired with an Olympus SpinSR spinning disc microscope using a 60X silicon oil (NA = 1.3) objective, with a z-stack step size of 0.6 μm at different frequencies depending on the experiment.
Photoconversion experiments
Photoconversion experiments were performed using a Leica SP5 confocal microscope with a 40x water immersion objective (NA = 1.1). Photoconversions were applied to manually selected regions of interest (ROIs) with a 405 nm laser for 10–20 seconds to induce conversion, monitored by simultaneous imaging at 488 nm to ensure complete conversion. All the imaging was performed at 28.5 °C.
Junction elongation assay
Junctional elongation was assessed by measuring elongation speed of isolated junctional rings during DLAV formation between 30 and 32 hpf. Inhibitor treatments CK666 (200 μM), Y-27632 (75 μM), or DMSO (1%) were applied 1h before mounting of embryos into 0.55% low-melting point agarose. The same concentrations of chemicals were applied to the low-melting-point agarose mounting medium and the E3 medium on top of it before imaging and imaging the junctions for 60–90 min on a Leica SP5 (Y-27632) Olympus SpinSR spinning disc microscope or Olympus SpinSR spinning disc (CK666) microscope.
Junctional merging tracking
Speed of junctional merge was evaluated by monitoring isolated junctional rings during DLAV formation. Inhibitor treatment Y-27632 (75 μM) or DMSO (1%) were applied 30 min before mounting. The same concentrations of chemicals were applied to the low-melting-point agarose mounting medium and the E3 medium on top of it before imaging and imaging the junctions for 10–15 min on Olympus SpinSR spinning disc microscope. Distances were measured using Fiji software. In each frame, the interjunctional distance was defined as the maximum distance between the proximal and distal junctions. A line was manually drawn between the proximal and distal junctions in Fiji, and its length was recorded. The same proximal and distal junction landmarks were used consistently across all time points.
Immunostaining
Zebrafish embryos of 30 to 32 hpf were fixed after dechorionation using Glyofixx (Thermo-Fisher Scientific) and incubated at 4°C overnight (ON) in 1.5 ml Eppendorf tubes (max. 20 embryos per tube). After fixation, embryos were washed four times for 5 minutes in 1x PBST at room temperature (RT) on a rocking platform. Embryos were then permeabilized using 0.5–1 % Triton-X100 in PBST for 30 min at RT. They were then blocked with 2% BSA and 5% goat serum in PBST overnight with continuous shaking at 4 °C. After blocking, the primary antibody solution was added. The primary antibodies were either diluted in blocking solution or Pierce Immunostain Enhancer Solution (Thermo Fisher Scientific). Primary antibody incubation was performed at 4 °C for 3 days. After incubation, the solution was removed, and the embryos were washed at least four times for 30 minutes each with PBST at 4 °C, or overnight. Subsequently, the embryos were incubated with secondary antibodies, diluted 1:2000 in blocking solution, and incubated at 4 °C.
Image preparation and analysis
Image analysis and measurements were performed using FIJI RRID:SCR_002285. Z-stacks were flattened by maximum slice intensity projections. Where needed, noise was reduced using Gaussian filtering (radius 0.7) and/or background subtracted (rolling ball radius 50) using ImageJ RRID:SCR_003070. Contrast and brightness of images were linearly adjusted. Particle Image Velocimetry (PIV) was employed to measure velocity fields in fluid flow as previously described (Yin et al., 2024). Image panels were created using the Open Microscopy Environment (OMERO). ARP2/3- Venus and mRuby2-UCHD localization were evaluated on a 4pixel-wide rectangle, and the average over length, corrected for background (evaluated as average of average intensity in 5 rectangles on the cell cytoplasm) and displayed in a graph using Graphpad Prism 10.4.1 RRID:SCR_002798. Proximal, distal, and interjunctional space domains were defined using VE-cad distribution, My9-mcherry distribution was evaluated as average intensity in the distinct domains The intensities are corrected for background (which has been evaluated as average of average intensities in 5 rectangles in the cell cytoplasm) and displayed in a graph using Graphpad Prism 10.4.1.
Statistical analysis
GraphPad Prism 10.4.1 was used to perform statistical analyses. For every experiment and analysis, sample size is specified in the figure legend. Sample sizes were not pre-determined using statistical methods, and all data meeting the quality control criteria were included in the analyses. Randomization was not applied to the experiments. Unless specified otherwise, default settings were used for all software tools in the analyses. Whenever a p-value is presented in the text or figures, the corresponding statistical test is indicated.
Supplementary Figures

The distal junction forms de novo.
a: Schematic representation of the experimental design. VE-cad-mClav2 is photoconverted at one pole of the junctional ring. Then time lapse imaging is performed on the half-converted ring. b: Time-lapse images (video s7) showing a DLAV junctional ring of an embryo expressing VE-cad-mClav2 before and right-after photoconversion. The red dashed square delimitates the photoconverted area. The white dashed square demarcates the zoomed-in area of c. c: Time-lapse of the zoomed in junctional ring pole. right-after photoconversion and 4 min later. White and yellow arrowheads point distal and proximal junction respectively. Distal junction is labeled by green, non-photoconverted VE-cad; but not by red photoconverted VE-cad. scale bars: 5μm.

CK666 disrupts Arp2/3 localization in DLAV anastomotic junctions.
Stills of Arpc1b-Venus and ZO1-td tomato before (a, c) and after 30 min treatment with DMSO 1 % (c) (n=17) and CK666 200 μM (d) (n=25). Timepoint 0 is around 30 hpf n>20. White arrow heads are pointing at junctional poles. a’, b’, c’, d’ are magnifications of the white dashed square delimited areas. scale bar: 10μm.

CK666 mediated JBL inhibition is reversible upon washout.
a: Still images from time-lapse videos (videos s12 and s13) showing F-actin dynamics at the same junctional ring, labeled with EGFP-UCHD, at around 30hpf (left) and 32hpf (right), after 30 min incubation with CK666 (200μM), and after a 90 min washout, respectively. scalebar 2μm. Similar observation were made in 11 movies. Blue and red arrowheads point to ectopic filopodia under CK666 inhibition and and reemerging lamellipodia during washout, respectively. b: Quantification of number of filopodia/JBL in CK666 (200 μM), n=11 JBL and washout n=17 JBL events. Unpaired t-test was used for statistical analysis. (P value = 0.0003). C: Quantification JBL filopodia length in CK666 (200 μM), n=11 JBL and washout n=17 JBL events. Unpaired t-test was used for statistical analysis. (p-value < 0.0001).

Myosin light-chain recruitment at the inter-junctional space during merging.
a, a’: Time-lapse of VEcad-EGFP (Cdh5ΔC-EGFP) and Myl9b-mCherry (shown in “fire” LUT) during “double junction” state (video s17). a: Still-image showing polarized accumulation of MLC during ‘‘double junction’’ state. a’: Still-images showing recruitment of MLC between proximal and distal junction. Yellow and blue arrowheads highlight the proximal and distal junction respectively b: Still-images from time-lapse video s18 of VE-cad-Venus and Myl9b-mCherry showing increase of MLC in the inter-junctional space prior to proximodistal junction mergence. Yellow and blue arrowheads highlight the proximal and distal junction. c, d: Time-lapses of VE-cad-EGFP (Cdh5ΔC-EGFP) and Myl9b-mCherry videos s19 and s20 showing recruitment of MLC between proximal and distal junction during ‘‘double junction’’ state. Yellow and blue arrowheads highlight the proximal and distal junction, respectively. scale bars: 2μm.
Data availability
The data that support the findings of this study are available in the supporting information of this article. https://www.researchsquare.com/article/rs-7065344/v2
Acknowledgements
We thank Kumuthini Kulendra and Andre Rodriguez for fish care and the Imaging Core Facility of the Biozentrum (Universität Basel) for microscopy support. We thank Anne Schmid (Institute Pasteur, Paris, France) for providing Tg(kdrl: Myl9a-GFP)p5Tg and Michel Bagnat (Duke University, USA) for providing TgKI(tjp1a-tdTomato)pd1224. We thank Sven Andreas Belting for preparing illustrations and graphic animations. This work has been supported by the Kantons Basel-Stadt and Basel-Land and by grants from the Swiss National Science Foundation (310030_200701 and 310030B_176400) to M.A..
Additional information
Author contributions
M.A. and H.-G.B. conceptualized the project. L.M., J.Y., C.W., I.P. and H.-G.B. designed the experiments. L.M., J.Y., C.W. and I.P. performed experiments and analyzed the data. J.M. and C.H. generated Tg(flia:Arpc1b-mVenus-p2A-Arpc3- mTurq2)mr25. L.M. and H.-G.B. wrote the manuscript. M.A., L.M. and H.-G.B edited the manuscript. All authors reviewed the manuscript.
Funding
Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (SNF) (310030_200701)
Markus Affolter
Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (SNF) (310030B_176400)
Markus Affolter
Additional files
Note
This reviewed preprint has been updated to correct a corresponding author's email address, and include an author as corresponding author.
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