Abstract
Subcortical brain structures such as the basal ganglia or the thalamus are involved in regulating motor and cognitive behavior. However, their contribution to perceptual consciousness is still unclear, due to the inherent difficulties of recording subcortical neuronal activity in humans. Here, we asked neurological patients undergoing surgery for deep brain stimulation to detect weak vibrotactile stimuli applied on their hand while recording single neuron activity from the tip of a microelectrode. We isolated putative single neurons in the subthalamic nucleus and thalamus. A significant proportion of neurons modulated their activity while participants were expecting a stimulus. We isolated a subset of neurons for which we had sufficiently good behavior to contrast neuronal activity between detected and undetected stimuli. We found that the firing rate of 23% of these neurons differed between detected and undetected stimuli. Our results provide direct neurophysiological evidence of the involvement of subcortical structures in for the detection of vibrotactile stimuli, thereby calling for a less cortico-centric view of the neural correlates of consciousness.
Introduction
Current methods to investigate the neural correlates of consciousness aim at contrasting the neural activity associated with different percepts under constant sensory stimulation to identify the minimal set of neuronal events sufficient for a specific conscious percept to occur (Koch et al., 2016; Seth et al., 2022). Typically, this involves asking participants to report whether a stimulus with an intensity around detection threshold is present or not. Taking advantage of the wealth of invasive electrophysiology recordings available, researchers have documented such correlates with detection tasks in rodents (e.g., Schmack et al., 2021), birds (Nieder et al., 2020) and non-human primates (e.g., Leopold & Logothetis 1996; de Lafuente & Romo, 2005). However, the use of animal models to study consciousness raises specific ethical concerns (e.g., Mazor et al., 2023), and requires interpreting behavioral responses with caution (Birch et al., 2022). Research into the neural correlates of consciousness in human volunteers is enriched by the analysis of fine-grained subjective reports to rule out various confounds (e.g attention, memory, report), but suffers from less spatially and temporally resolved physiological measurements. Indeed, only very few studies have found such correlates at the single neuron level (Fried et al., 1997; Quiroga et al., 2008; Reber et al., 2017; Gelbard-Sagiv et al., 2018; Pereira et al., 2021) and only in cortical regions. The role of subcortical structures for perceptual consciousness is theoretically relevant (Seth et al., 2022; Dehaene & Changeux, 2011; Ward, 2013; Schiff et al., 2008; Aru et al., 2020) with some empirical support from detection studies in non-human primates (Vazquez et al., 2012, 2013; Hagens et al., 2014; Tauste Campo et al., 2019), as well as functional imaging or local field potentials in humans (Levinson et al., 2021; Kronemer et al., 2022). Nonetheless, it remains unknown how the firing rate of subcortical neurons changes when a stimulus is consciously perceived. Here, we recorded individual neurons from the subthalamic nucleus (STN) and thalamus of human participants during 36 deep brain stimulation surgeries. Participants detected vibrotactile stimuli provided at the perceptual threshold and we tested how neurons in both subcortical structures were modulated by the task, the onset of the stimulus or the detection or not of the stimulus.
Results
Task and behavior
Deep brain stimulation surgeries provide a unique opportunity to record the activity of single neurons in subcortical structures of the human brain. Microelectrode recordings are performed routinely after patients are awakened from anesthesia, to allow electrophysiologists and neurosurgeons to identify the target brain structure along the planned trajectory (Figures 1B, S1). During this procedure, we attached a vibrotactile stimulator to the palm of the hand contralateral to the microelectrode recordings and estimated the stimulus intensity corresponding to participants’ individual tactile detection threshold. Once stable neuronal activity could be recorded in the target brain region (STN or thalamus), we proceeded to the main experiment, which comprised one or two sessions of 71 trials (total: 48 sessions). Each trial started with an audio “go” cue, followed by a vibrotactile stimulus applied at any time between 0.5 s and 2.5 s after the end of the cue (i.e. stimulation window), except for 20% of catch trials in which no stimulus was applied (Figure 1A). After a random delay ranging from 0.5 to 1 s, a “respond” cue was played, prompting participants to verbally report whether they felt a vibration or not. Therefore, none of the reported analyses are confounded by motor responses. Using a staircase procedure, the stimulus intensity was kept around the detection threshold over the whole experiment. When possible, participants were trained to perform the task prior to the surgery.
When analyzing tactile perception, we ensured that our results were not contaminated with spurious behavior (e.g. fluctuation of attention and arousal due to the surgical procedure). We excluded specific series of trials from analyses based on objective criteria and focused on trials where hits and misses occurred in commensurate proportions (see methods). This procedure led us to keep 36 sessions out of 48 with a mean of 24.0 [95% confidence interval = 22.0, 25.9] hit trials and 22.7 [20.8, 24.5] miss trials. Permutation tests at the single-participant level indicated that detected and missed stimuli were of similar intensity except in 5 sessions for which the intensity of detected stimuli was higher on average. Likewise, detected and missed stimuli had similar onsets, except in 1 session for whom stimuli with late onsets were predominantly missed, and in 2 sessions for whom stimuli with early onsets were predominantly missed. The hit rate was comparable between participants with Parkinson’s disease (0.51 [0.49, 0.53]) and essential tremor (0.52 [0.51, 0.53], Wilcoxon rank sum test: W = 114.5, p = 0.45). Catch trials were separated into 9.1 [8.1 10.1] correct rejections and 2.1 [1.7, 2.6] false alarms, with an equivalent false alarm rate between participants with Parkinson’s disease (0.24 [0.19, 0.28]) and essential tremor (0.24 [0.18, 0.30], Wilcoxon rank sum test: W = 145, p = 0.76). Intraoperative behavior was similar to the behavior observed during the training session and similar to what we found recently in a cohort of healthy participants using the same task (Pereira et al., 2021).
Neuronal firing was modulated by the task
We performed a total of 48 (STN: 25, Thal: 23) successful microelectrode recording sessions during 36 surgeries for deep brain stimulation electrode implantation. We isolated 50 putative single neurons (STN: 26, Thal: 24) according to spike sorting metrics (Figure S2A-G). We ensured that all neurons showed stable spike amplitudes during the recording (Figure S2H-J). We also ensured that for every analysis, a minimum of 20 trials per condition were kept after removing artifacts. First, we looked for cue-selective neurons that modulate their firing rate during the 500 ms delay following the end of the “go” cue, compared to a 500 ms pre-cue baseline period. There were 8 / 44 (18 %) cue-selective neurons (Figure 2A; 6 neurons were removed from the analysis due to an insufficient number of trials). We confirmed that these 8 cue-selective neurons could not have been obtained by chance by comparing this number to a null distribution obtained by permuting trial labels 1000 times (permutation test: p < 0.001). The proportion of cue-selective neurons was not significantly different in the STN (21%) and thalamus (15%; difference: p = 0.31, permutation test) and 6 out of 8 neurons showed a decrease in firing rate compared to the pre-cue baseline (Binomial test: p = 0.145).
Next, we investigated how many neurons showed task-selective modulations by comparing firing rates during the 2 s stimulation window to the 500 ms pre-cue baseline, indicating a modulation of their firing rate when a stimulus is expected. There were 9 / 44 (20 %) task-selective neurons (permutation test: p < 0.001) with a similar proportion in the STN (20 %) and thalamus (21 %; binomial test: p = 0.91; Figure 2B-D). Interestingly, 8 out of 9 neurons decreased their firing rate relative to the pre-cue baseline (Binomial test: p = 0.020). In both regions, a significant proportion (44 %; permutation test: p < 0.001) of the task-selective neurons were also cue-selective, modulating their firing rate before any sensory stimulation necessary for a decision occurred. Therefore, these cue- and task-selective neurons are unlikely to be involved in decision-related action selection or cancellation (15,16) but should be involved in the detection task per se.
Neuronal firing was modulated by the stimulus
We then searched for neurons that modulate their firing rate after the stimulus onset compared to a 300 ms pre-stimulus baseline while correcting for possible drifts in the firing rate during the trial (see methods). We found 8 / 37 such stimulus-selective neurons (22%, permutation test: p = 0.011; Figure 3A-D; 13 neurons were removed due to an insufficient number of trials), with 29% in the STN and 11% in the thalamus (difference: binomial test: p = 0.11). These differences occurred 210 ms ± 30 after the stimulus onset, lasted for an average of 130 ms ± 30, and 7 out of 8 neurons showed a decrease in firing rate after the stimulus onset (Binomial test: p = 0.020). These results show that subthalamic and thalamic neurons are modulated by stimulus onset, irrespective of whether it was reported or not, even though no immediate motor response was required.
Neuronal firing was modulated by tactile perception
Having identified subcortical neurons that were cue-, task-or stimulus-selective, we next sought to assess the role of these structures in conscious detection by comparing firing rates time-locked to detected vs missed stimuli. Of the 50 neurons recorded, 35 were associated with periods of high-quality behavior, allowing us to assume tactile stimulation at the perceptual threshold. We found 8 neurons (23 %) showing a significant difference after stimulus onset (permutation test: p = 0.0020; Figure 4A-D). Each neuron was found in a different participant. The proportion of these perception-selective neurons was similar in the STN (27 %) and the thalamus (20 %; difference: p = 0.529; permutation test). These differences in firing rates occurred 160 ms ± 30 after the stimulus onset and lasted for an average of 90 ms ± 10. We note that, 6 out of 8 neurons had higher firing rates for missed trials than hit trials, although this proportion was not significant (binomial test: p = 0.145). None of the aforementioned neurons showed sustained differences between the highest and lowest stimulus amplitudes nor between early and late stimulus onset within the 2 s stimulus window (Figure 5). Our control analyses confirm that our results do not stem from slight differences in stimulus amplitudes due to the staircase procedure or spurious differences induced by the start or response cues. Qualitatively, we found very little overlap between task-, stimulus- and perception-selective neurons (Figure S4). This result suggests that neurons in these two subcortical structures have mostly different functional roles. We also found no clear indication that neurons with a beta-band oscillatory component were more or less selective.
Discussion
The importance of cortico-subcortical loops for physiological and cognitive functions is well-established (Shepherd & Yamawaki, 2021). Yet, while the role of subcortical structures in perceptual consciousness is largely acknowledged (Dehaene & Changeux, 2011; Koch et al., 2016; Ward, 2013; Aru et al., 2020; Shepherd & Yamawaki, 2021), it remains poorly described in humans. This limit is likely due to the difficulty of recording subcortical activity in awake humans capable of providing conscious reports under controlled experimental conditions. We report the first intraoperative recordings of subcortical neurons in awake individuals during a detection task. By imposing a delay between the end of the tactile stimulation window and the subjective report, we ensured that neuronal responses reflected stimulus detection and not mere motor responses. In addition, because stimuli were applied on the palm, we asked participants to provide detection responses orally to avoid confounding neural activity related to sensory and motor processes of the upper limb. Our main result is that the activity of subcortical neurons co-varies with subjective reports following the presentation of detected vs missed tactile stimuli. This result confirms that the neuronal underpinnings of tactile detection can be observed at the scale of single neurons in humans (Fried et al., 1997; Quiroga et al., 2008; Reber et al., 2017; Gelbard-Sagiv et al., 2018; Pereira et al., 2021) but also shows for the first time that they are not limited to the cortex.
Our findings that neurons in the thalamus modulate their activity according to tactile detection adds to the existing evidence in favor of the role of the thalamus for perceptual consciousness. Indeed, thalamic activity and more precisely thalamocortical loops are often considered key to gate sensory stimuli to conscious access (Ward, 2013). In non-human primates, for example, oscillatory thalamic activity predicts tactile detection (Haegens et al., 2014), and functional interactions between the somatosensory thalamus and the cortex increase when a tactile stimulus is detected (Tauste Campo et al., 2019). In humans, thalamic local field potentials and fMRI activity were higher for seen vs unseen stimuli (Kronemer et al., 2022; Levinson et al., 2021) and causal effects of thalamic stimulation on the levels of consciousness have been found (Schiff et al., 2007). Future studies with higher neuronal yields will be helpful in assessing the contribution of distinct thalamic territories to tactile consciousness, focusing notably on the ventral caudal part, which contains neurons with tactile receptive fields.
Concerning the subthalamic nucleus, a possibility is that perception-selective neurons determine stimulus detection through the regulation of decisional processes. Indeed, previous studies reported a modulatory role of subthalamic activity on decisional processes, notably by elevating the decisional threshold on accumulated sensory evidence (Bogacz et al., 2007; Cavanagh et al., 2011; Green et al., 2013; Herz et al., 2016). In a recent study in which we measured the activity of cortical neurons in a similar task, we showed that evidence accumulation is also at play during conscious detection (Pereira et al., 2021). Based on this finding, we proposed that percepts fade in and out of consciousness when evidence accumulated by cortical neurons passes a given threshold (Pereira et al., 2022). The present results, therefore, indicate that the contribution of subthalamic neurons to decisional processes is not limited to discrimination tasks or motor planning, but may also regulate the threshold at which accumulated evidence gives rise to a conscious percept. Considering the inhibitory role of the subthalamic nucleus on the cortex (Mink et al., 1996), the fact that many of the perception-selective neurons we found had higher firing rate for misses than for hits suggests a role in elevating that threshold, similar to what is found in decision tasks manipulating conflict or cautiousness and requiring immediate responses (Franck et al., 2007; Cavanagh et al., 2011; Benis et al., 2016; Herz et al., 2016; Mosher et al., 2021). Thus, our results suggest that the STN plays an important role in a subcortical network gating conscious access, although it might not encode conscious content per se (Aru et al., 2012).
Apart from perception-selective neurons, we also found a distinct population of neurons in both the STN and thalamus that modulated their firing rate both after the cue and during the task, and therefore much before the stimulus onset. These neurons cannot be involved in detection-related processes but could instead be involved in task switching (Hikosaka & Isoda, 2010). We also found neurons that modulated their firing rates after the stimulus onset, irrespective of detection, similar to animal works in the STN (Al Tanir et al., 2023) and thalamus (Vazquez et al., 2012; Tauste Campo et al., 2018). Our results should be taken with caution as they are based on a small number of neurons due to the high complexity of intraoperative recordings, and because the number of trials we could collect was not sufficient to test the computational mechanisms underlying the neuronal activity we recorded. Future studies combining cortical and subcortical recordings would be useful to consolidate these findings and investigate how subcortical regulation interacts with the cortex. For example, the 160 ms latency we observed post-stimulus corresponds to the onset of a putative cortical correlate of consciousness, the perceptual awareness negativity (Dembski et al., 2021). We confirmed that our detection task was compatible with a contrastive analysis of consciousness in that it elicited a similar number of yes (detected stimuli or hit trials) and no responses (missed stimuli or miss trials), irrespective of stimulus intensity or stimulus onset. Nevertheless, it will be important in future studies to examine if similar subcortical responses are obtained when when stimuli are unattended (Wyart & Tallon-Baudry, 2008), task-irrelevant (Shafto & Pitts, 2015), or when participants passively experience stimuli without the instruction to report them (i.e., no-report paradigms) (Tsuchyia et al., 2015).
In sum, our study provides neurophysiological evidence from single neurons in humans that subcortical structures play a significant role in tactile detection either by themselves (Ward, 2013) or through their numerous connections with the cortex (Dehaene & Changeux, 2011). A comprehensive account of the neural correlates of consciousness should, therefore, not be cortico-centric but also consider subcortical contributions.
Methods
Participants
We recorded high impedance electrophysiological signals from microelectrodes inserted intraoperatively in the subthalamic nucleus of 32 participants with Parkinson disease or essential tremor undergoing deep brain stimulation electrode implantation surgeries (N = 36; 4 participants had two surgeries, one for each side). For individuals with Parkinson’s disease, the age at the time of the recording was 60.4 ± 2.7 years and the average UPDRS III score was 40.6 ± 3.0 prior to surgery and was reduced to 20.8 ± 2.8 after the surgery (p = 0.0015, z = 3.18). We also recorded intraoperatively in the thalamus of individuals with essential tremor undergoing deep brain stimulation surgeries. The age at the time of the recording was 68.9 ± 3.2 years and the average TETRA motor score was 20.1 ± 2.9 prior to surgery. The study was approved by the institutional review board of the West Virginia University Hospital (WVU02HSC17; #1709745061) and all participants provided written informed consent prior to any data collection.
Experimental procedure
Participants performed a tactile detection task programmed in Matlab using the Psychophysics toolbox (Brainard, 1997; Pelli, 1997; Kleiner et al., 2007). When possible, participants were trained a few days before the surgery (N = 18 / 36 surgeries). Participants sat in a reclining chair in a quiet room (training session) or were lying in the operating room (main session). Every trial started with a 300 ms long auditory “go” cue delivered through an external loudspeaker placed near the participants. Following the end of the go cue and a delay of 500 ms, a 100 ms vibrotactile stimulus could be delivered at any time during a two second stimulation window (i.e., uniform distribution between 0.8 and 2.8 s after the onset of the go cue; Figure 1A) on the lateral palm contralateral to the deep brain implant. Stimuli were applied using a MMC3 Haptuator vibrotactile device from TactileLabs Inc. (Montréal, Canada) driven by a 230 Hz sinusoid audio signal. Participants reported orally whether they felt the stimulus or not and whether they were confident in their answer or not after an auditory “respond” cue played one second after the end of the stimulation window. The participants responses could thus consist in “yes, sure”, “yes, unsure”, “no, sure” and “no, unsure”. The task was stopped after two sessions of 71 trials, or before in case of discomfort or other clinical constraints. As –upon waking from anesthesia– most participants did not use both confidence levels, confidence data was therefore not analyzed.
To keep the vibrotactile stimulus intensity around the detection threshold, we first conducted a rough threshold search by presenting a series of stimuli whose intensity decreased by steps of 5% until participants reported not feeling them anymore. Then we presented series of low intensity stimuli whose intensities increased by step of 5% until participants reported feeling them again. These procedures were repeated until the experimenter deemed the results satisfying. We took the average between the thresholds obtained during these procedures as a seed for the main task. During the main task, a 1up/1down adaptive staircase procedure (Levitt, 1971) ensured that the intensity was kept around the perceptual threshold by increasing the intensity by 5% after miss trial and decreasing the intensity by 5% after a hit trial. Of note, the absolute stimulus intensity is not informative and cannot be compared across patients and sessions, as it varied according to different factors (e.g. the length of the cable or the manner with which the tactile stimulator was strapped onto the palm).
Surgical procedure
STN or thalamus targets and trajectories were defined preoperatively using CranialSuite (Neurotargeting Inc., Nashville, US) based on MRI scans. Both targets were then defined with respect to the AC-PC (commissural) line using standard atlas-based methods and refined based on individual anatomy. The entry point was chosen approximately 2 to 3 cm from the midline and 1 cm anterior from the coronal suture and adjusted to individual anatomy in order to avoid traversing brain sulci, lateral ventricles or the medial bridging veins. Scalp incisions and burr-hole drilling were performed under local (lidocaine) and general (propofol) anesthesia and a microelectrode (FHC, Maine, US) was inserted through a guide cannula using a microdrive placed either on a Leksell frame (N = 13 surgeries) or a 3D printed mould (N = 23 surgeries).
Electrophysiology
Once the microelectrode reached the target brain structure (STN or thalamus), the speed of the microdrive was reduced and neuronal activity was streamed to a loudspeaker, allowing the electrophysiologist to verify the depth of the preplanned trajectory. The main research task was initiated when a neuron showed stable activity for a few tens of seconds and the anatomical localization was confirmed by the electrophysiologist. Recording depths were saved and used offline to define the anatomical localization (see Anatomical localization section). Electrophysiological data were recorded from the 5 mm tip of the microelectrode, referenced to the guide cannula and an adaptive line noise canceller was applied. Data were digitized either using a Guideline 4000 LP+ amplifier (FHC, Maine, US) at 30 kHz (N = 21 surgeries), or using a Guideline 5 amplifier (FHC, Maine, US) at 32 kHz and resampled offline to 30 kHz (N = 14 surgeries).
Anatomical localization
For 34 / 50 neurons, preoperative MRI and postoperative CT scans (co-registered in patient native space using CranialSuite) were available to precisely reconstruct surgical trajectories and recording locations (for the remaining 16 neurons, localizations were based on neurosurgical planning and confirmed by electrophysiological recordings at various depths). Recording depths were inspected along the trajectories in patient native space, projected to an MNI-coordinate space and compared against the Ilinsky atlas (Ilinsky et al., 2018) which delineates distinct thalamic sub-territories based on a marker of ψ-aminobutyric acid on sections post-mortem human brains.
Behavioral analyses
We used R 4.1.2 (Team R, 2020) and the tidyverse (Wickham et al., 2019) package to analyze behavioral data. Permutation tests were performed by permuting hit and miss trials over 1000 iterations for each participant. Non-parametric p-values were estimated by counting the permutations for which the difference between hits and misses was higher in the observed compared to the shuffled data.
As titrating and keeping the vibrotactile stimulation intensity to the perceptual level after anesthesia was a challenging task, we took great care in keeping only the highest quality recordings. We estimated the trial-by-trial hit-rate using a sliding window of 11 trials (for the first and last 5 trials, we mirrored trials to avoid border effects). Any trial with a hit-rate out of the ]25, 75[ % range were removed from further analysis comparing hit to miss trials. If less than 10 hit and 10 miss trials were kept by this procedure, the session (and its corresponding neurons) was removed from subsequent analyses (13 / 48 sessions; 27 %).
Spike sorting and firing rate estimation
Each microelectrode recording was filtered between 300 and 3000 Hz and visually inspected. Artifacts such as cross-talk from the participants’ vocal responses were marked and replaced by noise with a standard deviation matching the second pre- and post-artifact. We performed this procedure to avoid spuriously lowering the thresholds for neuronal spike detection. The timing of these artifactual epochs were saved in order to reject affected trials in later analyses. Neuronal spikes were detected and clustered using an online semi-automatic spike sorting algorithm (OSort) (Rutishauser et al., 2006). Each resulting cluster of neurons was inspected based on common metrics such as spike waveform, percentage of inter-spike interval below 3 ms, signal-to-noise ratio and power spectral densities and possibly merged with other clusters. Finally, the resulting curated neurons were labeled as putative single neuron or multiunit, depending on the spike waveforms, peak amplitude distribution and the percentage of inter-spike interval below 3 ms. Electrophysiological signals were realigned either to the onset of the “go” cue (Figures 2) or to the onset of the stimulus (Figures 3-4), which was precisely obtained by applying a matched filter to a copy of the audio signal used to drive the vibrotactile stimulator we simultaneously recorded with the electrophysiological data. We estimated instantaneous firing rates using a sliding Gaussian kernel with a standard deviation of 40 ms and 1 ms steps. When displaying the resulting average firing rates over time, we estimated the standard error of the mean using a bootstrap procedure with 1000 resamplings.
Identification of selective neurons
To thoroughly control for false positives and possibly non-normal distributions, we exclusively used non-parametric statistics (Wilcoxon rank sum test, sign test), coupled with permutation tests. For each analysis, we verified that the reported number of neurons could not have been obtained by chance by comparing this number to a null distribution using permutation tests (Maris & Oostenveld, 2007). For paired tests with respect to a baseline, we randomly flipped the sign of the difference between the firing rate during the trial and during the baseline and for unpaired tests, we randomly shuffled the conditions (i.e. a hit trial could be randomly assigned to a hit or a miss trial). To obtain a p-value, we compared the number of selective neurons to a null distribution obtained by randomly permuting the data 1000 times. This procedure allowed us to show that the number of selective neurons could not have been obtained by chance while controlling for multiple comparisons over time. Similarly, to test whether the proportion of neurons was different in the STN compared to the thalamus, we compared the absolute difference in the proportion of neurons in each anatomical location to a null distribution obtained by random permutations.
To identify cue-selective neurons we compared the number of spikes in a 500 ms baseline preceding the “go” cue to the number of spikes in a 500 ms period following the offset of the “go cue” using a two-tailed non-parametric sign test. Similarly, we identified task-responsive neurons by comparing the mean number of spikes in a 500 ms baseline preceding the “go” cue to the mean number of spikes during the 2 s stimulation window and performing a permutation test. We compared the differences in the proportion of selective neurons in the STN and thalamus, to the same differences observed in the shuffled data to assess its significance. Finally, we also compared the number of cue- and task-selective neurons to the same number observed in the shuffled data to assess whether the overlap was significant.
To identify detection-selective neurons, we looked for differences in the firing rates during the first 400 ms post-stimulus onset, assuming that subcortical signatures of stimulus detection ought to be found early following its onset. To correct for possible drifts occurring during the trial, we subtracted the cue-locked activity from catch trials to the cue-locked activity of stimulus-present trials before realigning to stimulus onset. We defined a cluster as a set of adjacent time points for which the firing rates were significantly different between hits and misses, as assessed by a non-parametric Wilcoxon rank sum test. A putative neuron was considered perception-selective when the length of a cluster was above 80 ms, corresponding to twice the standard deviation of the smoothing kernel used to compute the firing rate. Whether for the shuffled data or the observed data, if more than one cluster was obtained, we discarded all but the longest cluster. This permutation test allowed us to control for multiple comparisons across time and participants.
Data and code availability
Data and code necessary to replicate our results are available online (https://gitlab.com/michael.pereira/subcortical-ncc).
Further information and requests should be directed to and will be fulfilled by the lead contact, Michael Pereira (michael.pereira@univ-grenoble-alpes.fr).
Acknowledgements
MP was supported by two Postdoc.Mobility fellowships from the Swiss National Science Foundation (P2ELP3_187974; P400PM_199251). NF has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (grant agreement no. 803122). OB is supported by the Bertarelli Foundation, the Swiss National Science Foundation, and the European Science Foundation.
References
- The Subthalamic Nucleus : A Hub for Sensory Control via Short Three-Lateral Loop Connections with the Brainstem?Current Neuropharmacology 21:22–30
- Distilling the neural correlates of consciousnessNeurosci Biobehav Rev 36:737–46
- Cellular Mechanisms of Conscious ProcessingTrends in Cognitive Sciences 24:814–825
- Response inhibition rapidly increases single-neuron responses in the subthalamic nucleus of patients with Parkinson’s diseaseCortex 84:111–123
- How Should We Study Animal Consciousness Scientifically?Journal of Consciousness Studies 29:8–28https://doi.org/10.53765/20512201.29.3.008
- Extending a Biologically Inspired Model of Choice: Multi-Alternatives, Nonlinearity and Value-Based Multidimensional ChoicePhilos Trans Biol Sci 362:1655–70
- The Psychophysics ToolboxSpatial Vision 10:433–436
- Subthalamic nucleus stimulation reverses mediofrontal influence over decision thresholdNat Neurosci 14:1462–1462
- Experimental and Theoretical Approaches to Conscious ProcessingNeuron 70:200–27
- Neuronal correlates of subjective sensory experienceNature Neuroscience 8:1698–1703
- Perceptual awareness negativity: a physiological correlate of sensory consciousnessTrends Cogn Sci 25:660–70
- Hold Your Horses: Impulsivity, Deep Brain Stimulation, and Medication in ParkinsonismScience 318:1309–12
- Single Neuron Activity in Human Hippocampus and Amygdala during Recognition of Faces and ObjectsNeuron 18:753–65
- Human single neuron activity precedes emergence of conscious perceptionNat Commun 9
- Reduction of Influence of Task Difficulty on Perceptual Decision Making by STN Deep Brain StimulationCurr Biol 23:1681–4
- Thalamocortical rhythms during a vibrotactile detection taskProc Natl Acad Sci 111:E1797–805
- Neural Correlates of Decision Thresholds in the Human Subthalamic NucleusCurr Biol 26:916–916
- Switching from automatic to controlled behavior: cortico-basal ganglia mechanismsTrends Cogn Sci 14:154–61
- Human Motor Thalamus Reconstructed in 3D from Continuous Sagittal Sections with Identified Subcortical Afferent TerritoriesENeuro 5:1–17
- What’s new in Psychtoolbox-3?Perception 36 ECVP Abstract Supplement
- Neural correlates of consciousness: progress and problemsNat Rev Neurosci 17:307–21
- Human visual consciousness involves large scale cortical and subcortical networks independent of task report and eye movement activityNat Commun 13
- Activity changes in early visual cortex reflect monkeys’ percepts during binocular rivalryNature 379:549–553
- Cortical and subcortical signatures of conscious object recognitionNat Commun 12
- Transformed Up-Down Methods in PsychoacousticsJ Acoust Soc Am 49:467–77
- Nonparametric statistical testing of EEG- and MEG-dataJournal of Neuroscience Methods 164:177–190
- The Scientific Study of Consciousness Cannot and Should Not Be Morally NeutralPerspectives on Psychological Science 18:535–543
- The Basal Ganglia: Focused Selection and Inhibition of Competing Motor ProgramsProg Neurobiol 50:381–425
- Distinct roles of dorsal and ventral subthalamic neurons in action selection and cancellationNeuron 109:869–881
- A neural correlate of sensory consciousness in a corvid birdScience 369:1626–1629
- Pelli, D. G. The VideoToolbox software for visual psychophysics: Transforming numbers into movies, Spatial Vision 1997;10:437–442.The VideoToolbox software for visual psychophysics: Transforming numbers into movies, Spatial Vision 10:437–442
- Evidence accumulation relates to perceptual consciousness and monitoringNat Commun 12
- A leaky evidence accumulation process for perceptual experienceTrends Cogn Sci
- Human single-neuron responses at the threshold of conscious recognitionProc Natl Acad Sci 105:3599–604
- Single-Neuron Correlates of Conscious Perception in the Human Medial Temporal LobeCurr Biol 27:2991–2991
- Online detection and sorting of extracellularly recorded action potentials in human medial temporal lobe recordings, in vivoJ Neurosci Methods 154:204–24
- Theories of consciousnessNat Rev Neurosci 23:439–52
- Neural Signatures of Conscious Face Perception in an Inattentional Blindness ParadigmJournal of Neuroscience 35:10940–10948
- Untangling the cortico-thalamo-cortical loop : Cellular pieces of a knotty circuit puzzleNature Reviews Neuroscience 22:389–406
- Central Thalamic Contributions to Arousal Regulation and Neurological Disorders of ConsciousnessAnn N Y Acad Sci 1129:105–18
- Behavioural improvements with thalamic stimulation after severe traumatic brain injuryNature 448:600–3
- Striatal dopamine mediates hallucination-like perception in miceScience 372
- Feed-forward information and zero-lag synchronization in the sensory thalamocortical circuit are modulated during stimulus perceptionProc Natl Acad Sci 116:7513–7513
- Team R. R: A language and environment for statistical computing. Published online 2020.A language and environment for statistical computing. Published online
- No-Report Paradigms : Extracting the True Neural Correlates of ConsciousnessTrends in Cognitive Sciences 19:757–770
- Neural coding and perceptual detection in the primate somatosensory thalamusProceedings of the National Academy of Sciences 109:15006–15011
- Transformation of the neural code for tactile detection from thalamus to cortexProceedings of the National Academy of Sciences 110:E2635–E2644
- The thalamus: gateway to the mind: Gateway to the mindWiley Interdiscip Rev Cogn Sci 4:609–22
- Welcome to the TidyverseJournal of open source software 4
- Neural Dissociation between Visual Awareness and Spatial AttentionThe Journal of Neuroscience 28:2667–2679
Article and author information
Author information
Version history
- Preprint posted:
- Sent for peer review:
- Reviewed Preprint version 1:
Copyright
© 2024, Pereira et al.
This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited.
Metrics
- views
- 294
- downloads
- 22
- citations
- 0
Views, downloads and citations are aggregated across all versions of this paper published by eLife.