Figures and data

VGLL2-NCOA2 and TEAD1-NCOA2 Induce TEAD-Mediated Transcriptional Activation.
A. Schematic representation of protein structure of VGLL2, TEAD1, NCOA2, VGLL2-NCOA2 and TEAD1-NCOA2. Tondu motif (TDU), TEA DNA binding domain (TEA), YAP binding domain (YBD), basic Helix-Loop-Helix (bHLH), Per-Arnt-Sim domain (PAS), nuclear receptor interaction domain (NID), transcriptional activation domain (TAD). Arrows point to the break points.
B. Immunoblot analysis of YAP5SA, VGLL2-NCOA2, TEAD1-NCOA2, TAZ4SA, TEAD1, VGLL2 and NCOA2 in HEK293T cells transfected with the expression constructs carrying the HA tag. The figure shows the representative results of three biological replicates.
C. YAP5SA, VGLL2-NCOA2, TEAD1-NCOA2, TAZ4SA, TEAD1, VGLL2, and NCOA2 induce transcriptional activation of TBS (TEAD binding site)-luciferase reporter (TBS-Luc) in HEK293T cells. n = 3. ****, p < 0.0001.
D. Heatmap showing expression levels of the core genes including CTGF, CYR61, ANKRD1 and AMOTL2 significantly regulated in HEK293T cells expressing YAP5SA, VGLL2-NCOA2 and TEAD1-NCOA2. n=3
E. mRNA levels of CTGF, ANKRD1 and CYR61 in HEK293T cells expressing YAP5SA, VGLL2-NCOA2, TEAD1-NCOA2, TEAD1, VGLL2 or NCOA2. n=3; ****, p < 0.0001. NS, no significance.

VGLL2-NCOA2 regulates TEAD-dependent reporter activity.
A. Schematic representation of the exons and breaking points of the VGLL2, TEAD1 and NCOA2 genes involved in generating VGLL2::NCOA2 and TEAD1::NCOA2 gene arrangement.
B. EdU staining showing cell proliferation of HEK293T cells transfected with VGLL2-NCOA2 or TEAD1-NCOA2. Bar chart showing the percentage of EdU-positive cells. Scale bars, 200 μm, n=3; **, p < 0.01.
C. Immunoblot analysis of VGLL2-NCOA2, VGLL2-NCOA2ΔVGLL2 and VGLL2-NCOA2ΔNCOA2 in HEK293T cells transfected with the expression constructs carrying the V5 tag.
D. TBS-Luc reporter activity in HEK293T cells expressing VGLL2-NCOA2, VGLL2-NCOA2ΔVGLL2, and VGLL2-NCOA2ΔNCOA2. n = 3. ****, p < 0.0001.
E. Immunoblot analysis of VGLL2-NCOA2-V5 in HEK293T cells transfected with different amount of expression constructs.
F. VGLL2-NCOA2 promotes the activation of TBS-Luc reporter in dose-dependent manner. n = 3. ***, p < 0.001; ****, p < 0.0001.
G-H. Relative mRNA levels of CTGF, ANKRD1, and CYR61 in HEK293T cells expressing VGLL2-NCOA2 (G) or TEAD1-NCOA2 (H) with HA (5’ end), FLAG (3’ end) or V5 (3’ end) tag. n=3; NS, no significance.

VGLL2-NCOA2 and TEAD1-NCOA2-induced transcription does not require YAP and TAZ.
A. Co-IP assay showing VGLL2-NCOA2 binding to TEAD1 but not YAP5SA. YAP5SA-Flag or TEAD1-Flag was co-expressed with VGLL2-NCOA2-HA in HEK293T cells and immunoprecipitated with an anti-HA antibody.
B. VGLL2-NCOA2 binds to endogenous TEAD but not YAP/TAZ. Endogenous YAP/TAZ and TEAD proteins in HEK293T cells were detected by anti-YAP/TAZ and panTEAD antibodies, respectively.
C. Co-IP assay showing endogenous YAP/TAZ binding to TEAD1 but not TEAD1-NCOA2. TEAD1-Flag or TEAD1-NCOA2-Flag was expressed in HEK293T cells and immunoprecipitated with an anti-Flag antibody. Endogenous YAP/TAZ proteins were detected by anti-YAP/TAZ antibodies.
D. The activity of TBS-Luc reporter in HEK293T cells expressing YAP5SA, VGLL2-NCOA2, or TEAD1-NCOA2, with TEAD inhibitor CP1 (5 μM) treatment or co-expression of TEAD-ENR repressor construct. n=3; ****, p < 0.0001. NS, no significance.
E. Schematic representation of TEAD-ENR. TEA DNA-binding domain (TEA) and Engrailed repressor domain (ENR).
F. Immunoblot analysis of TEAD-ENR expression in HEK293T cells.
G. Co-IP assay showing YAP/TAZ were not essential for VGLL2-NCOA2 binding to endogenous TEAD. VGLL2-NCOA2-HA was expressed in HEK293T cells with or without YAP/TAZ knockdown and immunoprecipitated with an anti-HA antibody.
H. Relative mRNA levels of CTGF, ANKRD1, and CYR61 in HEK293T cells with YAP/TAZ knockdown and expressing VGLL2-NCOA2 or TEAD1-NCOA2. n=3; ****, p < 0.0001.

Characterization of VGLL2-NCOA2- and YAP-controlled transcriptional and chromatin landscapes.
A. Intersection of ATAC-seq (n=2), RNA-seq (n=3), and CUT&RUN (n=2) datasets in HEK293T cells expressing VGLL2-NCOA2 or YAP5SA.
B. Venn diagrams showing the overlaps of ATAC-seq peaks, CUT&RUN peaks, and differentially regulated genes from RNA-seq in HEK293T cells expressing VGLL2-NCOA2 or YAP5SA.
C. KEGG pathway enrichment analysis of ATAC-seq peaks identified in HEK293T cells expressing VGLL2-NCOA2 or YAP5SA. The "Hippo signaling pathway" is highlighted in red.
D. Distribution of CUT&RUN binding sites for VGLL2-NCOA2 and YAP5SA.
E. Motif enrichment analysis of VGLL2-NCOA2 and YAP5SA CUT&RUN Peaks.
F. Genomic tracks showing VGLL2-NCOA2 and YAP5SA occupancy at the CTGF, ANKRD1, and CYR61 loci.

Analysis of VGLL2-NCOA2, TEAD1-NCOA2 and YAP5SA -induced transcriptomes.
A. Volcano maps of RNA-seq data sets of HEK293T cells expressing VGLL2-NCOA2, TEAD1-NCOA2, or YAP5SA. Red dots represent upregulated mRNAs. Blue dots represent downregulated mRNAs. p < 0.05, Log2FoldChange > 1 or < -1.
B. Veen diagram showing the overlaps of differentially regulated genes identified by RNA-seq in HEK293T cells expressing VGLL2-NCOA2, TEAD1-NCOA2, or YAP5SA.
C. KEGG pathway enrichment analysis of differentially regulated genes identified by RNA-seq in HEK293T cells expressing VGLL2-NCOA2, TEAD1-NCOA2 or YAP5SA. “Hippo signaling pathway” is highlighted in red.

ATAC-seq and CUT&RUN data characterization in VGLL2-NCOA2 and YAP5SA-expressing cells.
A. Heatmaps of TEAD-motif containing ATAC-seq peaks in HEK293T cells expressing VGLL2-NCOA2 or YAP5SA.
B. Distribution of ATAC-seq peaks in HEK293T cells expressing VGLL2-NCOA2 or YAP5SA. For VGLL2-NCOA2 ATAC-seq peaks, Promoter (<=1kb) 50.57%, Promoter (1−2kb) 6.59%, 5’ UTR 0.13%, 3’ UTR 1.44%, Exon 1.52%, Intron 18.39%, and Distal and Intergenic 21.35%. For YAP5SA ATAC-seq peaks, Promoter (<=1kb) 51.4%, Promoter (1−2kb) 6.89%, 5’ UTR 0.13%, 3’ UTR 1.45%, Exon 1.58%, Intron 17.28%, and Distal and Intergenic 21.26%. n=2.
C. VGLL2-NCOA2 promotes chromatin accessibility. Scatter diagrams of ATAC-seq peaks show more up-regulated (red) than downregulated (blue) in HEK293T cells transfected with VGLL2-NCOA2 or YAP5SA.
D. Heatmaps of VGLL2-NCOA2 and YAP5SA CUT&RUN peaks.
E. VGLL2-NCOA2 and YAP genomic occupancy. Scatter diagrams showing more up-regulated CUT&RUN peaks (red) than down-regulated CUT&RUN peaks (blue) of VGLL2-NCOA2 and YAP5SA.
F. KEGG pathway enrichment analysis of VGLL2-NCOA2 and YAP5SA CUT&RUN peaks. “Hippo signaling pathway” is highlighted in red.

VGLL2-NCOA2 and TEAD1-NCOA2 engage p300 epigenetic regulators.
A. Diagram showing the BioID proteomic analyses of BirA*-VGLL2-NCOA2, BirA*-TEAD1-NCOA2, BirA*-YAP5SA, and BirA*-TAZ4SA.
B. Co-IP assay showing endogenous p300 binding to VGLL2-NCOA2 and TEAD1-NCOA2 but not YAP5SA.
C. KEGG enrichment analysis of p300 CUT&RUN peaks in control HEK293T cells and HEK293T cells expressing VGLL2-NCOA2 or TEAD1-NCOA2. The "Hippo signaling pathway" is highlighted in red.
D. Motif enrichment analysis of p300 CUT&RUN peaks in control HEK293T cells and HEK293T cells expressing VGLL2-NCOA2 or TEAD1-NCOA2.
E. Genomic tracks showing p300 occupancy at the CYR61, ANKRD1, CTGF, and CREB3 loci in control HEK293T cells and HEK293T cells expressing VGLL2-NCOA2 or TEAD1-NCOA2.

p300 is required for VGLL2-NCOA2- and TEAD1-NCOA2-induced tumorigenesis in vitro.
A. Co-IP assay showing the NCOA2 fusion part of VGLL2-NCOA2 was essential for p300 binding. VGLL2-NCOA2-V5, VGLL2-NCOA2ΔNCOA2-V5 and VGLL2-NCOA2ΔVGLL2-V5 was expressed in HEK293T cells and immunoprecipitated with an anti-V5 antibody. Endogenous p300 proteins were detected by anti-p300 antibody.
B-D. mRNA levels of Ctgf, Ankrd1, and Cyr61 in C2C12 cells expressing YAP5SA, VGLL2-NCOA2, or TEAD1-NCOA2 with or without treatment of A485 (5 μM). n=3; ****, p < 0.0001. NS, no significance.
E. Representative image of colony formation of C2C12 cells expressing YAP5SA, VGLL2-NCOA2, or TEAD1-NCOA2 with or without treatment of A485 (5 μM) for 2 weeks. Scale bars, 100 μm.
F-G. Colony size (F) and number of colonies (G) formed by C2C12 cells expressing YAP5SA, VGLL2-NCOA2, or TEAD1-NCOA2 with or without treatment of A485 (5 μM). **, p < 0.01. ****, p < 0.0001. NS, no significance.

p300 is essential for VGLL2-NCOA2- and TEAD1-NCOA2-induced tumorigenesis in vivo.
A. Representative H&E and IHC staining of Desmin and Ki67 in C2C12-control allograft, C2C12-VGLL2-NCOA2 tumor allograft, and C2C12-TEAD1-NCOA2 tumor allograft. Scale bars, 200 μm.
B. Immunoblot analysis of VGLL2-NCOA2-FLAG and TEAD1-NCOA2-FLAG expression in C2C12 cells, detected by an anti-FLAG antibody.
C-D. Allograft leg volume of C2C12-VGLL2-NCOA2 (C) and C2C12-TEAD1-NCOA2 (D) after intramuscular injection into the leg of Nude mice with or without intraperitoneal injection of A485 (100 mg/kg). The error bars represent the mean leg volume ± SEM. n = 6. ****, p < 0.0001.
E. Representative H&E and IHC staining of Ki67 in C2C12-VGLL2-NCOA2 and C2C12-TEAD1-NCOA2 tumor allografts with or without A485 (100 mg/kg) treatment. Scale bars, 200 μm.
F. Percentage of Ki67-positive cells in Figure 6E. n=6; ***, p < 0.001.
G-H. mRNA levels of Ctgf, Ankrd1, and Cyr61 in C2C12-VGLL2-NCOA2 and C2C12-TEAD1-NCOA2 tumor allografts with or without A485 (100 mg/kg) treatment. **, p < 0.01. ***, p < 0.001. ****, p < 0.0001.



