Shugoshin biases chromosomes for biorientation through condensin recruitment to the pericentromere

  1. Kitty F Verzijlbergen
  2. Olga O Nerusheva
  3. David Kelly
  4. Alastair Kerr
  5. Dean Clift
  6. Flavia de Lima Alves
  7. Juri Rappsilber
  8. Adele L Marston  Is a corresponding author
  1. University of Edinburgh, United Kingdom
  2. Institute of Bioanalytics, Technische Universität Berlin, Germany
10 figures, 4 videos and 2 additional files

Figures

Figure 1 with 1 supplement
Sgo1 alleles that affect biorientation.

(A) Sgo1-3A, but not Sgo1-100 or Sgo1-700 are maintained at the centromere in cells arrested in mitosis by treatment with nocodazole. Cells carrying SGO1-6HA (AM906), SGO1-100-6HA (AM6956), SGO1-700-…

https://doi.org/10.7554/eLife.01374.003
Figure 1—figure supplement 1
The sgo1-100 and sgo1-700 mutations do not affect the timing of cell cycle entry.

Strains as in Figure 1A were released from G1 as described in Figure 1B and DNA content was measured at the indicated times by FACS.

https://doi.org/10.7554/eLife.01374.004
PP2A-Rts1 recruitment to the centromere by Sgo1 is not required for biorientation.

(A) Sgo1-100 and Sgo1-700, but not Sgo1-3A, associate with Rts1. Cells carrying RTS1-9MYC and SGO1-SZZ(TAP) (AM9144), sgo1-100-SZZ(TAP) (AM9272), sgo1-700-SZZ(TAP) (AM9142), sgo1-3A-SZZ(TAP)

https://doi.org/10.7554/eLife.01374.005
Figure 3 with 2 supplements
Sgo1 is required for the maintenance of Ipl1 at centromeres, but is dispensable for its initial recruitment.

(A) Ipl1/aurora B co-immunoprecipitates with Sgo1. Cells producing SZZ(TAP)-tagged Sgo1 (AM8975), Sgo1-100 (AM8971), Sgo1-700 (AM8969), Sgo1-3A (AM8973) or no TAP (AM3513) and carrying IPL1-6HA were …

https://doi.org/10.7554/eLife.01374.006
Figure 3—figure supplement 1
The Haspin homologs, Alk1 and Alk2, are not required for the initial recruitment of Ipl1 to centromeres.

Wild-type (AM3513), alk1Δ alk2Δ (AM10612) and alk1Δ alk2Δ SGO1-aid (AM10393) cells carrying IPl1-6HA as well as a no tag control (AM1176) were arrested in G1 by treatment with alpha factor. Samples …

https://doi.org/10.7554/eLife.01374.007
Figure 3—figure supplement 2
Defective biorientation in ipl1-as mutants.

Biorientation assay showing CEN4-GFP separation in wild-type (AM4643) and ipl1-as (AM10374) cells carrying SPB (SPC42-tdTomato) markers. Cells were released from G1 into nocodazole and NAPP1, before …

https://doi.org/10.7554/eLife.01374.008
Figure 4 with 3 supplements
Sgo1 interacts with condensin and recruits it to the pericentromere.

(A and B) Condensin and PP2A co-purify with Sgo1. Sgo1 was purified from wild-type or protease-deficient cells that were (A) cycling or (B) arrested in mitosis using the cold-sensitive tubulin …

https://doi.org/10.7554/eLife.01374.009
Figure 4—figure supplement 1
The Sgo1-condensin interaction is not dependent on DNA or treatment with the cross-linking agent, DSP.

Cells carrying YCS4-6HA and SGO1-SZZ(TAP) (AM9138) or no TAP (AM5705) were arrested in mitosis by treatment with nocodazole for 2 hr. Cultures were either harvested and directly drop-frozen (−DSP) …

https://doi.org/10.7554/eLife.01374.010
Figure 4—figure supplement 2
Removal of PCR duplicates does not alter the conclusion that Sgo1 is important for Brn1 enrichment in the pericentromere.

This is the same analysis as in Figure 3H, except that only unique reads are included (therefore eliminating duplicate samples generated during the PCR amplification step). Both methods of analysis …

https://doi.org/10.7554/eLife.01374.011
Figure 4—figure supplement 3
Brn1 is reduced around all 16 individual centromeres in sgo1Δ cells.

Brn1 enrichment in a 20 kb region surrounding all 16 individual centromeres in wild type and sgo1Δ cells is shown for the experiment described in Figure 4F–H. All reads were included in this analysis.

https://doi.org/10.7554/eLife.01374.012
Figure 5 with 4 supplements
Sgo1 is not required for cohesin association with chromosomes.

Wild-type (AM1145) and sgo1Δ (AM1474) cells carrying SCC1-6HA were arrested in mitosis by treatment with nocodazole for 3 hr. Samples were harvested, anti-HA ChIP was performed and both input and IP …

https://doi.org/10.7554/eLife.01374.013
Figure 5—figure supplement 1
Scc1 association with all 16 centromeres is unaffected by SGO1 deletion.

Scc1 enrichment in a 20 kb region surrounding all 16 individual centromeres in wild type and sgo1Δ cells is shown from the experiment in Figure 5. All reads were included in this analysis.

https://doi.org/10.7554/eLife.01374.014
Figure 5—figure supplement 2
ChIP-qPCR analysis showing Scc1-6HA levels at the centromere and pericentromere.

Wild type and sgo1Δ cells were treated as described in Figure 5 except that ChIP samples were analyzed by qPCR using primer sets at CEN4, CEN5 and a site in the pericentromere of chromosome IV. The …

https://doi.org/10.7554/eLife.01374.015
Figure 5—figure supplement 3
Cohesin is required for normal Sgo1 association with the pericentromere.

Wild type (AM906) and pMET-SCC1 (AM6673) strains carrying SGO1-6HA together with no tag wild type (AM1176) and pMET-SCC1 controls (AM1599) were arrested in G1 using alpha factor in the presence of …

https://doi.org/10.7554/eLife.01374.016
Figure 5—figure supplement 4
Cohesin loading factors, but not monopolin, are important for proper condensin association with the centromere.

Wild type (AM5708), SCC2-aid (AM8918), chl4Δ (AM8885), iml3Δ (AM5710) and lrs4Δ (AM9766) strains carrying BRN1-6HA, as well as a no tag control (AM1176) were treated with nocodazole and NAA (to …

https://doi.org/10.7554/eLife.01374.017
Figure 6 with 1 supplement
Sgo1 is sufficient for condensin recruitment.

(A and B) Sgo1 overproduction leads to increased levels of Brn1 on chromosomes. Cells carrying BRN1-6HA and that were otherwise wild type (AM5708) or carrying pGAL-SGO1 (AM10859) integrated an …

https://doi.org/10.7554/eLife.01374.018
Figure 6—figure supplement 1
SGO1 overexpression in metaphase-arrested cells increases Brn1 association with the centromere.

Strains AM5708 (BRN1-6HA), AM10859 (BRN1-6HA pGAL-SGO1) were pre-cultured in YEP + R + Ade medium before supplementing with nocodazole and galactose (2 hr) for 3 hr and then harvesting for anti-HA …

https://doi.org/10.7554/eLife.01374.019
Figure 7 with 1 supplement
Condensin facilitates effective error correction.

(A) Sister kinetochore biorientation is defective after nocodazole washout in cells lacking condensin. Strains carrying SPB (Spc42-tdTomato) and CEN4 (CEN4-GFP) markers were released from a G1 …

https://doi.org/10.7554/eLife.01374.020
Figure 7—figure supplement 1
Deletion of SGO1 impairs biorientation rather than centromere cohesion.

The distance from CEN4-GFP to the nearest SPC42-tdTomato focus was measured for cells with just one visible CEN4-GFP foci from the experiment shown in Figure 7C–F. The fraction of cells with a CEN4-G…

https://doi.org/10.7554/eLife.01374.021
Condensin biases chromosomes to biorient.

(AC) Condensin and Sgo1, but not Ipl1, are required to bias sister kinetochores towards biorientation. (A) Scheme of the microfluidics assay to test sister kinetochore bias. Wild-type, sgo1Δ, YCS5-a…

https://doi.org/10.7554/eLife.01374.024
Figure 9 with 2 supplements
Shugoshin enables the bias towards sister kinetochore biorientation by condensin recruitment.

(A) Schematic diagram showing Sgo1-associated complexes and their functions at the pericentromere. (B) Sgo1-100 and Sgo1-3A, but not Sgo1-700, retain association with Brn1. Cells carrying BRN1-6HA

https://doi.org/10.7554/eLife.01374.027
Figure 9—figure supplement 1
The Sgo1-100 protein can recruit condensin to kinetochores.

(A and B) Condensin is at least partially recruited to the centromere after release from G1 in sgo1-100 cells. Wild-type (AM5708), sgo1-100 (AM9442) and sgo1-700 (AM9291) cells carrying BRN1-6HA

https://doi.org/10.7554/eLife.01374.028
Figure 9—figure supplement 2
Sgo1-tetR-GFP, but not Sgo1-100-tetR-GFP, Sgo1-700-tetR-GFP or Sgo1-3A-tetR-GFP tethered to CEN4 can partially rescue the mis-segregation of chromosome IV after nocodazole washout in otherwise sgo1Δ cells.

Diploid cells carrying tetR-tdTomato and SGO1-tetR-GFP (AM14005), sgo1-100-tetR-GFP (AM14006), sgo1-700-tetR-GFP (AM14007), sgo1-3A-tetR-GFP (AM14008) or no Sgo1-TetR fusion (AM14009), with tetOs

https://doi.org/10.7554/eLife.01374.029
Model for dual role of Sgo1 in biorientation is shown.

Shugoshin ensures sister kinetochore biorientation through two mechanisms. First, early in the cell cycle, shugoshin mediates the enrichment of condensin within the pericentromere. We propose that …

https://doi.org/10.7554/eLife.01374.030

Videos

Video 1
Example video of a wild-type cell in the error correction assay.

The video corresponds to the image gallery in Figure 5C (upper panel).

https://doi.org/10.7554/eLife.01374.022
Video 2
Example video of an ipl1-as cell in the error correction assay.

The video corresponds to the image gallery in Figure 5C (lower panel).

https://doi.org/10.7554/eLife.01374.023
Video 3
Example video of a wild type cell in the assay to test for a bias towards sister kinetochore biorientation.

The video corresponds to the image gallery in Figure 6C (upper panel).

https://doi.org/10.7554/eLife.01374.025
Video 4
Example video of a YCS5-aid cell in the assay to test for a bias towards sister kinetochore biorientation.

The video corresponds to the image gallery in Figure 6C (lower panel).

https://doi.org/10.7554/eLife.01374.026

Additional files

Supplementary file 1

Complete list of peptides identified in the experiments shown in Figure 4A,B.

https://doi.org/10.7554/eLife.01374.031
Supplementary file 2

(A) Yeast strains used in this study. (B) qPCR primers used in this study. (C) Genome summary table for Brn1-6HA ChIP-seq.

https://doi.org/10.7554/eLife.01374.032

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