(a) Western blot analysis of Ptpn11 in YFP-positive cells isolated by FACS from limbs of control and coPtpn11 mutant mice that carry the RosaeYFP allele; YFP-positive cells from E15.5 and P0 animals …
(a) Genetic strategy used to mutate Ptpn11 using Pax7Cre and Ptpn11flox alleles. (b) Gating strategy to isolate YFP+ and YFP- cells from E14.5 and P0 Pax7Cre;RosaeYFP animals by FACS. YFP …
(a) Immunohistological analysis of Pax7 (red) and laminin (green) in muscle of control and coPtpn11 mutant mice; DAPI (blue) was used as a counterstain. Arrowheads point to Pax7+ cells. (b) …
(a) Gating strategy used to isolate VCAM1+ CD31- CD45- Sca1- myogenic cells from P0 animals. VCAM1 and the sum of CD31, CD45, and Sca1 fluorescence intensities are displayed on the x- and y-axis, …
(a) Quantification of mRNA transcripts related to cell cycle, myogenesis, autophagy, transdifferentiation in YFP+ cells isolated by FACS from control and coPtpn11 mutant limb muscle at P0. (b) …
(a) Cytospins of freshly isolated muscle stem cells from control and coPtpn11 mice (P0); cells were immunostained for Pax7 (red) and MyoG (green), and nuclei were counterstained with DAPI (blue). (b)…
(a) Western blot analysis of phosphorylation of Mapk/Erk1/2, PI3K/Akt and Mapk/p38 in C2C12 cells cultured in the presence of either vehicle or GS493 (5, 10, 20 and 30 µM). (b) Western blot analysis …
(a) Genetic strategy used to induce tamoxifen-dependent mutation of Ptpn11 and to activate Map2k1DD expression in adult satellite cells. (b) Gating strategy to isolate VCAM1+ CD31- CD45- Sca1- …
Fibers from adult Txcontrol and TxcoPtpn11 mice were cultured for the indicated times, and analyzed for VCAM1 (red) and Ki67 (green) protein; the inset depicts Ki67 staining (green). Nuclei were …
(a) Immunostaining of VCAM1 (red) and MyoG (green) on fibers from Txcontrol and TxcoPtpn11 mice cultured for 72 hrs. Nuclei were counterstained with DAPI (blue). (b) Quantification of VCAM1+ cells …
(a) Outline of the experiment. (b) Immunostaining for VCAM1 (red), Pax7 (green), and laminin (blue) of tibialis anterior muscle from Txcontrol and TxcoPtpn11 mice 10 days after tamoxifen; arrowheads …
(a) Outline of the experiment. (b) Quantification of Pax7+VCAM1+ satellite cells/100 fibers in tibialis anterior muscle before (t0), 10 (t1), and 90 (t2) days after tamoxifen administration. (c) …
(a) Outline of the regeneration experiment. (b) Immunostaining for laminin (blue) of injured muscle from Txcontrol and TxcoPtpn11 animals seven days after injury (7dpi). Nuclei were counterstained …
(a) Haematoxylin/eosin staining of adult tibialis anterior muscle seven days after injury. (b) Staining for C/EBPα (green), collagen IV (ColIV, red) and DAPI (blue) of muscle from Txcontrol and …
(a) Outline of the experiment. (b) Immunostaining for Pax7 (red), Ki67 (green) and collagen IV (CollV; blue) in regenerating tibialis anterior muscle seven days after injury (7dpi). Mice were …
(a) Outline of the experiment. (b) Immunostaining for Pax7 (red), TUNEL (green) and laminin (blue) on regenerating muscle after treatment with vehicle or GS493. (c) Quantification of …
Gene expression changes in Ptpn11 mutant satellite cells.
Cell cycle associated genes | FC | FDR |
---|---|---|
Ccnd1 Cyclin D1 | -2.58 | 0.00363 |
Ccnb1 Cyclin B1 | -2.33 | 0.00144 |
Prc1 Protein regulator of cytokinesis 1 | -2.32 | 0.01522 |
Ranbp1 Ran-binding protein 1 | -2.18 | 0.00081 |
Cdc2a Cyclin dependent kinase 1a | -2.11 | 0.00402 |
Immediate early genes | ||
Egr4 Early growth response 4 | -3.00 | 0.00300 |
Tnfrsf12a FGF-inducible 14/ Tweak-receptor | -2.65 | 0.00144 |
Egr2 Early growth response 2 | -2.58 | 0.00318 |
Plk2 Polo-like-kinase 2 | -2.57 | 0.00004 |
Extracellular matrix/ secreted proteins | ||
Adamts2 ADAM Metallopeptidase 2 | 3.15 | 0.00144 |
Thbs2 Thrombospondin 2 | 2.89 | 0.00519 |
Mfap5 Microfibrillar-associated protein 4 | 2.84 | 0.01179 |
Col1a1 Collagen 1a1 | 2.75 | 0.00374 |
Mfap2 Microfibrillar-associated protein 2 | 2.62 | 0.00179 |
Col1a2 Collagen 1a2 | 2.29 | 0.00082 |
Col16a1 Collagen 16a1 | 2.17 | 0.00681 |
FC: fold-change; FDR: false discovery rate; corrected p-value (q-value) determined as described (Hochberg and Benjamini, 1990).
List of all deregulated genes in neonatal Ptpn11 mutant muscle stem cells.
Transcripts labeled in colors are also shown in Table 1 and are associated with particular GO terms. Green: cell cycle-associated; yellow: immediate early gene; purple: extracellular matrix and matrix remodeling. FDR: false discovery rate. Corrected p-values (q-value) was determined as described (Hochberg and Benjamini, 1990).
List of enriched GO terms.
Enriched GO terms in deregulated genes in Ptpn11 mutant muscle stem cells. FDR: false discovery rate. Corrected p-values (q-value) was determined as described (Hochberg and Benjamini, 1990).
Statistical data for each experiment shown in Figures 1–8 and Figure 1—figure supplement 1; Figure 2—figure supplement 1; Figure 2—figure supplement 2; Figure 4—figure supplement 1; Figure 5—figure supplement 1; Figure 6—figure supplement 1; Figure 7—figure supplement 1; Figure 8—figure supplement 1.
Shown are the definition of the center, the error bars, the statistical test used, n-numbers for each genotype or treatment for a specific developmental stage and the corresponding p-value for each comparison. S.E.M.: standard error of the mean.