Natural haplotypes of FLM non-coding sequences fine-tune flowering time in ambient spring temperatures in Arabidopsis

  1. Ulrich Lutz
  2. Thomas Nussbaumer
  3. Manuel Spannagl
  4. Julia Diener
  5. Klaus FX Mayer
  6. Claus Schwechheimer  Is a corresponding author
  1. Technische Universität München, Germany
  2. University of Vienna, Austria
  3. Helmholtz Zentrum München, Germany

Abstract

Cool ambient temperatures are major cues determining flowering time in spring. The mechanisms promoting or delaying flowering in response to ambient temperature changes are only beginning to be understood. In Arabidopsis thaliana, FLOWERING LOCUS M (FLM) regulates flowering in the ambient temperature range and FLM is transcribed and alternatively spliced in a temperature-dependent manner. We identify polymorphic promoter and intronic sequences required for FLM expression and splicing. In transgenic experiments covering 69% of the available sequence variation in two distinct sites, we show that variation in the abundance of the FLM-ß splice form strictly correlate (R2 = 0.94) with flowering time over an extended vegetative period. The FLM polymorphisms lead to changes in FLM expression (PRO2+) but may also affect FLM intron 1 splicing (INT6+). This information could serve to buffer the anticipated negative effects on agricultural systems and flowering that may occur during climate change.

Article and author information

Author details

  1. Ulrich Lutz

    Plant Systems Biology, Technische Universität München, Freising, Germany
    Competing interests
    The authors declare that no competing interests exist.
  2. Thomas Nussbaumer

    Computational Systems Biology, University of Vienna, Vienna, Austria
    Competing interests
    The authors declare that no competing interests exist.
  3. Manuel Spannagl

    Plant Genome and Systems Biology, Helmholtz Zentrum München, Neuherberg, Germany
    Competing interests
    The authors declare that no competing interests exist.
  4. Julia Diener

    Plant Systems Biology, Technische Universität München, Freising, Germany
    Competing interests
    The authors declare that no competing interests exist.
  5. Klaus FX Mayer

    Plant Genome and Systems Biology, Helmholtz Zentrum München, Neuherberg, Germany
    Competing interests
    The authors declare that no competing interests exist.
  6. Claus Schwechheimer

    Plant Systems Biology, Technische Universität München, Freising, Germany
    For correspondence
    claus.schwechheimer@wzw.tum.de
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-0269-2330

Funding

Deutsche Forschungsgemeinschaft (SPP1530)

  • Claus Schwechheimer

Deutsche Forschungsgemeinschaft (SFB924)

  • Klaus FX Mayer
  • Claus Schwechheimer

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Copyright

© 2017, Lutz et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 2,791
    views
  • 717
    downloads
  • 45
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Ulrich Lutz
  2. Thomas Nussbaumer
  3. Manuel Spannagl
  4. Julia Diener
  5. Klaus FX Mayer
  6. Claus Schwechheimer
(2017)
Natural haplotypes of FLM non-coding sequences fine-tune flowering time in ambient spring temperatures in Arabidopsis
eLife 6:e22114.
https://doi.org/10.7554/eLife.22114

Share this article

https://doi.org/10.7554/eLife.22114

Further reading

    1. Plant Biology
    Zongju Yang, Tianqi Bai ... Chen Chen
    Research Article

    As a master regulator of seed development, Leafy Cotyledon 1 (LEC1) promotes chlorophyll (Chl) biosynthesis in Arabidopsis, but the mechanism underlying this remains poorly understood. Here, we found that loss of function of OsNF-YB7, a LEC1 homolog of rice, leads to chlorophyllous embryo, indicating that OsNF-YB7 plays an opposite role in Chl biosynthesis in rice compared with that in Arabidopsis. OsNF-YB7 regulates the expression of a group of genes responsible for Chl biosynthesis and photosynthesis by directly binding to their promoters. In addition, OsNF-YB7 interacts with Golden 2-Like 1 (OsGLK1) to inhibit the transactivation activity of OsGLK1, a key regulator of Chl biosynthesis. Moreover, OsNF-YB7 can directly repress OsGLK1 expression by recognizing its promoter in vivo, indicating the involvement of OsNF-YB7 in multiple regulatory layers of Chl biosynthesis in rice embryo. We propose that OsNF-YB7 functions as a transcriptional repressor to regulate Chl biosynthesis in rice embryo.

    1. Plant Biology
    Yuanyuan Bu, Xingye Dong ... Shenkui Liu
    Research Article Updated

    Urea is intensively utilized as a nitrogen fertilizer in agriculture, originating either from root uptake or from catabolism of arginine by arginase. Despite its extensive use, the underlying physiological mechanisms of urea, particularly its adverse effects on seed germination and seedling growth under salt stress, remain unclear. In this study, we demonstrate that salt stress induces excessive hydrolysis of arginine-derived urea, leading to an increase in cytoplasmic pH within seed radical cells, which, in turn, triggers salt-induced inhibition of seed germination (SISG) and hampers seedling growth. Our findings challenge the long-held belief that ammonium accumulation and toxicity are the primary causes of SISG, offering a novel perspective on the mechanism underlying these processes. This study provides significant insights into the physiological impact of urea hydrolysis under salt stress, contributing to a better understanding of SISG.