Bacterial flagella grow through an injection-diffusion mechanism

  1. Thibaud T Renault
  2. Anthony O Abraham
  3. Tobias Bergmiller
  4. Guillaume Paradis
  5. Simon Rainville
  6. Emmanuelle Charpentier
  7. Călin C Guet
  8. Yuhai Tu
  9. Keiichi Namba
  10. James P Keener  Is a corresponding author
  11. Tohru Minamino
  12. Marc Erhardt  Is a corresponding author
  1. Helmholtz Centre for Infection Research, Germany
  2. Osaka University, Japan
  3. Institute of Science and Technology Austria, Austria
  4. Laval University, Canada
  5. Max Planck Institute for Infection Biology, Germany
  6. IBM Thomas J. Watson Research Center, United States
  7. University of Utah, United States

Abstract

The bacterial flagellum is a self-assembling nanomachine. The external flagellar filament, several times longer than a bacterial cell body, is made of a few tens of thousands subunits of a single protein: flagellin. A fundamental problem concerns the molecular mechanism of how the flagellum grows outside the cell, where no discernible energy source is available. Here, we monitored the dynamic assembly of individual flagella using in situ labelling and real-time immunostaining of elongating flagellar filaments. We report that the rate of flagellum growth, initially ∼1,700 amino acids per second, decreases with length and that the previously proposed chain mechanism does not contribute to the filament elongation dynamics. Inhibition of the proton motive force-dependent export apparatus revealed a major contribution of substrate injection in driving filament elongation. The combination of experimental and mathematical evidence demonstrates that a simple, injection-diffusion mechanism controls bacterial flagella growth outside the cell.

Article and author information

Author details

  1. Thibaud T Renault

    Junior Research Group Infection Biology of Salmonella, Helmholtz Centre for Infection Research, Braunschweig, Germany
    Competing interests
    The authors declare that no competing interests exist.
  2. Anthony O Abraham

    Graduate School of Frontier Biosciences, Osaka University, Osaka, Japan
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-8710-1351
  3. Tobias Bergmiller

    Institute of Science and Technology Austria, Vienna, Austria
    Competing interests
    The authors declare that no competing interests exist.
  4. Guillaume Paradis

    Department of Physics, Engineering Physics and Optics, Laval University, Quebec City, Canada
    Competing interests
    The authors declare that no competing interests exist.
  5. Simon Rainville

    Department of Physics, Engineering Physics and Optics, Laval University, Quebec City, Canada
    Competing interests
    The authors declare that no competing interests exist.
  6. Emmanuelle Charpentier

    Max Planck Institute for Infection Biology, Berlin, Germany
    Competing interests
    The authors declare that no competing interests exist.
  7. Călin C Guet

    Institute of Science and Technology Austria, Klosterneuburg, Austria
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-6220-2052
  8. Yuhai Tu

    IBM Thomas J. Watson Research Center, New York, United States
    Competing interests
    The authors declare that no competing interests exist.
  9. Keiichi Namba

    Graduate School of Frontier Biosciences, Osaka University, Suita, Japan
    Competing interests
    The authors declare that no competing interests exist.
  10. James P Keener

    Department of Mathematics, University of Utah, Salt Lake City, United States
    For correspondence
    keener@math.utah.edu
    Competing interests
    The authors declare that no competing interests exist.
  11. Tohru Minamino

    Graduate School of Frontier Biosciences, Osaka University, Suita, Japan
    Competing interests
    The authors declare that no competing interests exist.
  12. Marc Erhardt

    Junior Research Group Infection Biology of Salmonella, Helmholtz Centre for Infection Research, Braunschweig, Germany
    For correspondence
    marc.erhardt@helmholtz-hzi.de
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-6292-619X

Funding

Helmholtz-Gemeinschaft (VH-NG-932)

  • Marc Erhardt

Japan Society for the Promotion of Science (15H01640)

  • Tohru Minamino

Max-Planck-Gesellschaft

  • Emmanuelle Charpentier

National Institutes of Health (R01GM081747)

  • Yuhai Tu

European Commission (334030)

  • Marc Erhardt

Japan Society for the Promotion of Science (25000013)

  • Keiichi Namba

Natural Sciences and Engineering Research Council of Canada

  • Simon Rainville

Alexander von Humboldt-Stiftung

  • Thibaud T Renault

Japan Society for the Promotion of Science (26293097)

  • Tohru Minamino

Japan Society for the Promotion of Science (24117004)

  • Tohru Minamino

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Reviewing Editor

  1. Frank Jülicher, Max Planck Institute for the Physics of Complex Systems, Germany

Version history

  1. Received: November 11, 2016
  2. Accepted: March 4, 2017
  3. Accepted Manuscript published: March 6, 2017 (version 1)
  4. Version of Record published: April 10, 2017 (version 2)

Copyright

© 2017, Renault et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 5,980
    views
  • 1,103
    downloads
  • 66
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Thibaud T Renault
  2. Anthony O Abraham
  3. Tobias Bergmiller
  4. Guillaume Paradis
  5. Simon Rainville
  6. Emmanuelle Charpentier
  7. Călin C Guet
  8. Yuhai Tu
  9. Keiichi Namba
  10. James P Keener
  11. Tohru Minamino
  12. Marc Erhardt
(2017)
Bacterial flagella grow through an injection-diffusion mechanism
eLife 6:e23136.
https://doi.org/10.7554/eLife.23136

Share this article

https://doi.org/10.7554/eLife.23136

Further reading

    1. Microbiology and Infectious Disease
    2. Structural Biology and Molecular Biophysics
    Alexander D Cook, Mark Carrington, Matthew K Higgins
    Research Article

    African trypanosomes replicate within infected mammals where they are exposed to the complement system. This system centres around complement C3, which is present in a soluble form in serum but becomes covalently deposited onto the surfaces of pathogens after proteolytic cleavage to C3b. Membrane-associated C3b triggers different complement-mediated effectors which promote pathogen clearance. To counter complement-mediated clearance, African trypanosomes have a cell surface receptor, ISG65, which binds to C3b and which decreases the rate of trypanosome clearance in an infection model. However, the mechanism by which ISG65 reduces C3b function has not been determined. We reveal through cryogenic electron microscopy that ISG65 has two distinct binding sites for C3b, only one of which is available in C3 and C3d. We show that ISG65 does not block the formation of C3b or the function of the C3 convertase which catalyses the surface deposition of C3b. However, we show that ISG65 forms a specific conjugate with C3b, perhaps acting as a decoy. ISG65 also occludes the binding sites for complement receptors 2 and 3, which may disrupt recruitment of immune cells, including B cells, phagocytes, and granulocytes. This suggests that ISG65 protects trypanosomes by combining multiple approaches to dampen the complement cascade.

    1. Structural Biology and Molecular Biophysics
    Thuy TM Ngo, Bailey Liu ... Taekjip Ha
    Research Article

    The organization of nucleosomes into chromatin and their accessibility are shaped by local DNA mechanics. Conversely, nucleosome positions shape genetic variations, which may originate from mismatches during replication and chemical modification of DNA. To investigate how DNA mismatches affect the mechanical stability and the exposure of nucleosomal DNA, we used an optical trap combined with single-molecule FRET and a single-molecule FRET cyclization assay. We found that a single base-pair C-C mismatch enhances DNA bendability and nucleosome mechanical stability for the 601-nucleosome positioning sequence. An increase in force required for DNA unwrapping from the histone core is observed for single base-pair C-C mismatches placed at three tested positions: at the inner turn, at the outer turn, or at the junction of the inner and outer turn of the nucleosome. The results support a model where nucleosomal DNA accessibility is reduced by mismatches, potentially explaining the preferred accumulation of single-nucleotide substitutions in the nucleosome core and serving as the source of genetic variation during evolution and cancer progression. Mechanical stability of an intact nucleosome, that is mismatch-free, is also dependent on the species as we find that yeast nucleosomes are mechanically less stable and more symmetrical in the outer turn unwrapping compared to Xenopus nucleosomes.