1. Structural Biology and Molecular Biophysics
Download icon

Ion Channels: From ions to insulin

  1. Voula Kanelis  Is a corresponding author
  1. University of Toronto Mississauga, Canada
  2. University of Toronto, Canada
  • Cited 0
  • Views 1,903
  • Annotations
Cite this article as: eLife 2017;6:e25159 doi: 10.7554/eLife.25159


Electron cryo-microscopy has revealed the three-dimensional structure of a potassium channel that has a central role in regulating the release of insulin from the pancreas.

Main text

The hormone insulin is released from beta cells in the pancreas when the levels of sugar in the blood become too high. High levels of sugar cause the concentration of a molecule called ATP – the energy currency of the cell – to increase inside cells. Ion channels known as KATP channels sense changes in the levels of ATP to allow potassium ions to move out of beta cells, and thus have a central role in regulating blood sugar levels (Ashcroft, 2005). When ATP levels in the cell are high, the KATP channels close, and the resulting changes in the electrical excitability of the beta cell membranes lead to an increase in the release of insulin. Likewise, when blood sugar levels decrease, cellular ATP levels also drop, causing the KATP channels to open so that less insulin is released.

These channels are of considerable medical interest because mutations that affect them can cause diabetes or result in abnormally high levels of insulin, which causes a disease known as hyperinsulinism. Drugs that close KATP channels to stimulate the release of insulin are widely used to treat type II diabetes, while drugs that open these channels are used to treat mild forms of hyperinsulinism. Now, in eLife, James Chen and Show-Ling Shyng and colleagues at the Oregon Health and Science University – including Gregory Martin as first author – report that they have used electron cryo-microscopy (cryo-EM) to determine the structure of a KATP channel in the closed state (Martin et al., 2017). In independent work, Ning Gao, Lei Chen and colleagues at Peking University have used cryo-EM to determine the structure of a closed KATP channel under different conditions (Li et al., 2017).

A pancreatic KATP channel contains four copies of a pore-forming protein called Kir6.2 and four copies of a regulatory protein called SUR1 (Figure 1A). The SUR1 subunits control the flow of potassium ions through the pore formed by the Kir6.2 subunits. ATP closes KATP channels by binding to the Kir6.2 subunits. When blood sugar levels are low, another molecule called ADP along with magnesium ions (together known as MgADP) bind to the SUR1 subunits and the channels open. Other factors also regulate KATP channels, such as the lipid PIP2, which opens the channel (Nichols, 2006).

Schematic diagrams of a closed KATP channel.

Each KATP channel contains four Kir6.2 subunits (green) and four SUR1 subunits. Each SUR1 subunit contains a core (blue), an L0 linker (purple line) and a transmembrane domain called TMD0 (purple). The diagrams are based on the cryo-EM KATP channel structures by Martin et al. and Li et al. (A) Top view of the channel showing the propeller-shaped structure. (B) Side view of the channel showing two Kir6.2 subunits and two SUR1 subunits sitting in the cell membrane (gray). The core of SUR1 contains two transmembrane domains (TMD1 and TMD2) and two nucleotide-binding domains (NBD1 and NBD2), while the L0 linker contains two short α-helices. The Kir6.2 subunit is made of two transmembrane helices (dark green rectangle) and two cytoplasmic regions (light green rectangle). Martin et al. and Li et al. found that the center of the KATP channel propeller structure is formed by the Kir6.2 subunits and the TMD0 of SUR1. The cores of the SUR1 subunits form the propeller blades, but there are unexpected spaces between the cores of adjacent SUR1 subunits that had not been observed in a previously reported structure formed under different conditions (Mikhailov et al., 2005).

The structure reported by Martin et al. was of a pancreatic KATP channel prepared in the presence of ATP and glibenclamide (a drug that is known to close the channels), while Li et al. solved the structure of the pancreatic KATP channel prepared in the presence of glibenclamide alone. However, both groups report that the closed channels have similar propeller-shaped structures (Figure 1A).

SUR1 contains a core structure of two membrane-spanning domains and two nucleotide-binding domains (Dean et al., 2001), along with an additional membrane-spanning domain known as TMD0 that is connected to the SUR1 core structure by the L0 linker (Aguilar-Bryan et al., 1995; Figure 1B). The cryo-EM structures show that the SUR1 TMD0 interacts with the Kir6.2 pore. Thus, the cryo-EM structures highlight how TMD0 is important in channel assembly, and explain why this SUR1 domain is a hot spot for mutations that cause hyperinsulinism (Aittoniemi et al., 2009). An unexpected finding is that the SUR1 cores and Kir6.2 do not directly interact, even though the nucleotide-binding domains of SUR1 (which bind to MgADP) are essential for opening the pore (Nichols, 2006) and mutations affecting these domains cause disease (Aittoniemi et al., 2009).

It was known from previous work that Kir6.2 is made of two membrane-spanning helices and two cytoplasmic regions (Figure 1; Hibino et al., 2010). The cryo-EM structures show that ATP, PIP2, and glibenclamide bind to regions of the Kir6.2 and SUR1 subunits, and hence explain why both types of subunits affect the action of these molecules. ATP binds to a site between the cytoplasmic regions of adjacent Kir6.2 subunits and a region of the SUR1 L0 linker. PIP2 binds to an adjacent site that also involves the Kir6.2 cytoplasmic domains and the SUR1 L0 linker, while glibenclamide binds at a site made by a different region of the L0 linker and the core of SUR1.

The structures highlight the dynamics involved in controlling whether the channel is open or closed. Both teams found that there is a subset of closed channels in which the cytoplasmic domains of Kir6.2 are rotated in a way that may represent a transition toward the open state. Notably, Li et al. show that the inner membrane-spanning helices of two of the Kir6.2 subunits are slightly displaced in this subset of channels, which also possess a bound PIP2 molecule.

Previous studies on proteins that structurally resemble SUR1 suggest that, for the channel to open in the presence of MgADP, the SUR1 core has to "untwist" to allow the two nucleotide-binding domains to come into contact (Wilkens, 2015). Further structural studies will be needed to find out whether the twisted SUR1 core in the closed KATP channel is caused by glibenclamide binding to the channel, and to reveal how other drugs that open KATP channels work.

Particular regions in the SUR1 transmembrane domains sense conformational changes in the nucleotide-binding domains caused by MgADP binding. Because these regions also bind to the L0 linker, it is possible that conformational changes in the nucleotide-binding domains may alter the structure of the L0 linker. Structural studies of the channels in the open state would shed more light on whether the L0 linker structure changes and may reveal how mutations in Kir6.2 and SUR1 that disrupt the ability of the channel to close can cause diabetes. The exciting structures of KATP channels reported by Martin et al. and Li et al. lay the foundation for finally answering many of these questions.


Article and author information

Author details

  1. Voula Kanelis

    1. Department of Chemical and Physical Sciences, University of Toronto Mississauga, Mississauga, Canada
    2. Department of Chemistry, University of Toronto, Toronto, Canada
    3. Department of Cell and Systems Biology, University of Toronto, Toronto, Canada
    For correspondence
    Competing interests
    The author declares that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-9262-9954

Publication history

  1. Version of Record published: March 9, 2017 (version 1)
  2. Version of Record updated: March 9, 2017 (version 2)


© 2017, Kanelis

This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited.


  • 1,903
    Page views
  • 182
  • 0

Article citation count generated by polling the highest count across the following sources: Crossref, PubMed Central, Scopus.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Download citations (links to download the citations from this article in formats compatible with various reference manager tools)

Open citations (links to open the citations from this article in various online reference manager services)

Further reading

    1. Structural Biology and Molecular Biophysics
    Christopher Warren, Nikola P Pavletich
    Research Article

    DNA double-strand breaks (DSBs) can lead to mutations, chromosomal rearrangements, genome instability, and cancer. Central to the sensing of DSBs is the ATM (Ataxia-telangiectasia mutated) kinase, which belongs to the phosphatidylinositol 3-kinase-related protein kinase (PIKK) family. In response to DSBs, ATM is activated by the MRN (Mre11-Rad50-Nbs1) protein complex through a poorly-understood process that also requires double-stranded DNA. Previous studies indicate that the FxF/Y motif of Nbs1 directly binds to ATM, and is required to retain active ATM at sites of DNA damage. Here we report the 2.5 Å resolution cryo-EM structures of human ATM and its complex with the Nbs1 FxF/Y motif. In keeping with previous structures of ATM and its yeast homolog Tel1, the dimeric human ATM kinase adopts a symmetric, butterfly-shaped structure. The conformation of the ATM kinase domain is most similar to the inactive states of other PIKKs, suggesting that activation may involve an analogous realigning the N and C lobes along with relieving the blockage of the substrate-binding site. We also show that the Nbs1 FxF/Y motif binds to a conserved hydrophobic cleft within the Spiral domain of ATM, suggesting an allosteric mechanism of activation. We evaluate the importance of these structural findings with mutagenesis and biochemical assays.

    1. Biochemistry and Chemical Biology
    2. Structural Biology and Molecular Biophysics
    Shannon J McKie et al.
    Research Article

    DNA topoisomerase VI (topo VI) is a type IIB DNA topoisomerase found predominantly in archaea and some bacteria, but also in plants and algae. Since its discovery, topo VI has been proposed to be a DNA decatenase, however robust evidence and a mechanism for its preferential decatenation activity was lacking. Using single-molecule magnetic tweezers measurements and supporting ensemble biochemistry, we demonstrate that Methanosarcina mazei topo VI preferentially unlinks, or decatenates DNA crossings, in comparison to relaxing supercoils, through a preference for certain DNA crossing geometries. In addition, topo VI demonstrates a significant increase in ATPase activity, DNA binding and rate of strand passage, with increasing DNA writhe, providing further evidence that topo VI is a DNA crossing sensor. Our study strongly suggests that topo VI has evolved an intrinsic preference for the unknotting and decatenation of interlinked chromosomes by sensing and preferentially unlinking DNA crossings with geometries close to 90°.