The formation of the light-sensing compartment of cone photoreceptors coincides with a transcriptional switch
- Friedrich Miescher Institute for Biomedical Research, Switzerland
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Abstract
High-resolution daylight vision is mediated by cone photoreceptors. The molecular program responsible for the formation of their light sensor, the outer segment, is not well understood. We correlated daily changes in ultrastructure and gene expression in postmitotic mouse cones, between birth and eye opening, using serial block-face electron microscopy (EM) and RNA sequencing. Outer segments appeared rapidly at postnatal day six and their appearance coincided with a switch in gene expression. The switch affected over 14% of all expressed genes. Genes that switched off were rich in transcription factors and neurogenic genes. Those that switched on contained genes relevant for cone function. Chromatin rearrangements in enhancer regions occurred before the switch was completed, but not after. We provide a resource comprised of correlated EM, RNAseq, and ATACseq data, showing that the growth of a key compartment of a postmitotic cell involves an extensive switch in gene expression and chromatin accessibility.
Article and author information
Author details
Funding
Swiss National Science Foundation (3100330B_163457)
- Botond Roska
European Research Council (669157)
- Botond Roska
Swiss Natiional Science Foundation (CRSII3_141801)
- Botond Roska
European Research Council (RETMUS)
- Botond Roska
The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.
Ethics
Animal experimentation: Animal procedures were done in accordance with standard ethical guidelines (European Communities Guidelines on the Care and Use of Laboratory Animals, 86/609/EEC) and were approved by the Veterinary Department of the Canton of Basel-Stadt.
Reviewing Editor
- Eve Marder, Brandeis University, United States
Publication history
- Received: August 22, 2017
- Accepted: November 3, 2017
- Accepted Manuscript published: November 6, 2017 (version 1)
- Version of Record published: November 14, 2017 (version 2)
Copyright
© 2017, Daum et al.
This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.
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Further reading
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- Computational and Systems Biology
- Genetics and Genomics
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- Computational and Systems Biology
- Genetics and Genomics
