An integrative genomic analysis of the Longshanks selection experiment for longer limbs in mice

Sequencing data have been deposited in SRA (accession number SRP165718), GEO (accession numbers GSE121564, GSE121565 and GSE121566)Non-sequence data have been deposited at Dryad (doi:10.5061/dryad.0q2h6tk).Analytical code and additional notes have been deposited in the following repository: https://github.com/evolgenomics/LongshanksAdditional raw data and code are hosted via our institute's FTP servers at http://ftp.tuebingen.mpg.de/fml/ag-chan/Longshanks/

1. 1
   An integrative genomic analysis of the Longshanks selection experiment for longer limbs in mice

   1. Castro JPL
   2. Yancoskie MN
   3. Marchini M
   4. Belohlavy S
   5. Hiramatsu L
   6. Kučka M
   7. Beluch WH
   8. Naumann R
   9. Skuplik IO
   10. Cobb J
   11. Barton NH
   12. Rolian CP
   13. Chan YF

   (2019)

   NCBI Sequence Read Archive, SRP165718.
2. 2
   An integrative genomic analysis of the Longshanks selection experiment for longer limbs in mice

   1. Castro JPL
   2. Yancoskie MN
   3. Marchini M
   4. Belohlavy S
   5. Hiramatsu L
   6. Kučka M
   7. Beluch WH
   8. Naumann R
   9. Skuplik IO
   10. Cobb J
   11. Barton NH
   12. Rolian CP
   13. Chan YF

   (2019)

   NCBI Gene Expression Omnibus, GSE121564.
3. 3
   An integrative genomic analysis of the Longshanks selection experiment for longer limbs in mice

   1. Castro JPL
   2. Yancoskie MN
   3. Marchini M
   4. Belohlavy S
   5. Hiramatsu L
   6. Kučka M
   7. Beluch WH
   8. Naumann R
   9. Skuplik IO
   10. Cobb J
   11. Barton NH
   12. Rolian CP
   13. Chan YF

   (2019)

   NCBI Gene Expression Omnibus, GSE121565.
4. 4
   An integrative genomic analysis of the Longshanks selection experiment for longer limbs in mice

   1. Castro JPL
   2. Yancoskie MN
   3. Marchini M
   4. Belohlavy S
   5. Hiramatsu L
   6. Kučka M
   7. Beluch WH
   8. Naumann R
   9. Skuplik IO
   10. Cobb J
   11. Barton NH
   12. Rolian CP
   13. Chan YF

   (2019)

   NCBI Gene Expression Omnibus, GSE121566.
5. 5
   Data from: An integrative genomic analysis of the Longshanks selection experiment for longer limbs in mice

   1. Castro JPL
   2. Yancoskie MN
   3. Marchini M
   4. Belohlavy S
   5. Hiramatsu L
   6. Kučka M
   7. Beluch WH
   8. Naumann R
   9. Skuplik IO
   10. Cobb J
   11. Barton NH
   12. Rolian CP
   13. Chan YF

   (2019)

   Dryad Digital Repository, doi:10.5061/dryad.0q2h6tk.

1. 1
   Mouse Genomes Project version 3 dbSNP v137 release

   1. Keane TM
   2. Goodstadt L
   3. Danecek P
   4. White MA
   5. Wong K et al

   (2011)

   dbSNP v137 release.
2. 2
   A map of the cis-regulatory sequences in the mouse genome.

   1. Y Shen
   2. F Yue
   3. D F McCleary
   4. Z Ye
   5. L Edsall
   6. S Kuan
   7. U Wagner
   8. J.Dixon
   9. L Lee
   10. V V Lobanenkov
   11. B Ren

   (2012)

   Mouse E14.5 Limb.
3. 3
   Mouse knockout phenotypes

   1. Smith CL
   2. Blake JA
   3. Kadin JA
   4. Richardson JE
   5. Bult CJ
   6. the Mouse Genome Database Group

   (2018)

   Mouse Genome Informatics.
4. 4
   Mouse Gene Expression Database

   1. Finger JH
   2. Smith CM
   3. Hayamizu TF
   4. McCright IJ
   5. Xu J
   6. Law M
   7. Shaw DR
   8. Baldarelli RM
   9. Beal JS
   10. Blodgett O
   11. Campbell JW
   12. Corbani LE
   13. Lewis JR
   14. Forthofer KL
   15. Frost PJ
   16. Giannatto SC
   17. Hutchins LN
   18. Miers DB
   19. Motenko H
   20. Stone KR
   21. Eppig JT
   22. Kadin JA
   23. Richardson JE
   24. Ringwald M

   (2017)

   Mouse Gene Expression Database.
5. 5
   Defining the role of common variation in the genomic and biological architecture of adult human height

   1. A R Wood
   2. T Esko
   3. J Yang
   4. S Vedantam et al

   (2014)

   GWAS Anthropometric 2014 Height.