Two distinct mechanisms target the autophagy-related E3 complex to the pre-autophagosomal structure

Abstract

In autophagy, Atg proteins organize the pre-autophagosomal structure (PAS) to initiate autophagosome formation. Previous studies in yeast revealed that the autophagy-related E3 complex Atg12-Atg5-Atg16 is recruited to the PAS via Atg16 interaction with Atg21, which binds phosphatidylinositol 3-phosphate (PI3P) produced at the PAS, to stimulate conjugation of the ubiquitin-like protein Atg8 to phosphatidylethanolamine. Here, we discover a novel mechanism for the PAS targeting of Atg12-Atg5-Atg16, which is mediated by the interaction of Atg12 with the Atg1 kinase complex that serves as a scaffold for PAS organization. While autophagy is partially defective without one of these mechanisms, cells lacking both completely lose the PAS localization of Atg12-Atg5-Atg16 and show no autophagic activity. As with the PI3P-dependent mechanism, Atg12-Atg5-Atg16 recruited via the Atg12-dependent mechanism stimulates Atg8 lipidation, but also has the specific function of facilitating PAS scaffold assembly. Thus, this study significantly advances our understanding of the nucleation step in autophagosome formation.

Data availability

All data generated or analysed during this study are included in the manuscript and supporting files.

Article and author information

Author details

  1. Kumi Harada

    School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan
    Competing interests
    No competing interests declared.
  2. Tetsuya Kotani

    School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan
    Competing interests
    No competing interests declared.
  3. Hiromi Kirisako

    School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan
    Competing interests
    No competing interests declared.
  4. Machiko Sakoh-Nakatogawa

    School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan
    Competing interests
    No competing interests declared.
  5. Yu Oikawa

    Institute of Innovative Research, Tokyo Institute of Technology, Yokohama, Japan
    Competing interests
    No competing interests declared.
  6. Yayoi Kimura

    Advanced Medical Research Center, Yokohama City University, Yokohama, Japan
    Competing interests
    No competing interests declared.
  7. Hisashi Hirano

    Advanced Medical Research Center, Yokohama City University, Yokohama, Japan
    Competing interests
    No competing interests declared.
  8. Hayashi Yamamoto

    Institute of Innovative Research, Tokyo Institute of Technology, Yokohama, Japan
    Competing interests
    No competing interests declared.
  9. Yoshinori Ohsumi

    Institute of Innovative Research, Tokyo Institute of Technology, Yokohama, Japan
    Competing interests
    No competing interests declared.
  10. Hitoshi Nakatogawa

    School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan
    For correspondence
    hnakatogawa@bio.titech.ac.jp
    Competing interests
    Hitoshi Nakatogawa, Reviewing editor, eLife.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-5828-0741

Funding

Ministry of Education, Culture, Sports, Science, and Technology (25111003)

  • Hitoshi Nakatogawa

Ministry of Education, Culture, Sports, Science, and Technology (17H01430)

  • Hitoshi Nakatogawa

Ministry of Education, Culture, Sports, Science, and Technology (23000015)

  • Yoshinori Ohsumi

Japan Science and Technology Agency (JPMJCR13M7)

  • Hitoshi Nakatogawa

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Copyright

© 2019, Harada et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

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  1. Kumi Harada
  2. Tetsuya Kotani
  3. Hiromi Kirisako
  4. Machiko Sakoh-Nakatogawa
  5. Yu Oikawa
  6. Yayoi Kimura
  7. Hisashi Hirano
  8. Hayashi Yamamoto
  9. Yoshinori Ohsumi
  10. Hitoshi Nakatogawa
(2019)
Two distinct mechanisms target the autophagy-related E3 complex to the pre-autophagosomal structure
eLife 8:e43088.
https://doi.org/10.7554/eLife.43088

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https://doi.org/10.7554/eLife.43088

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