Genetic reagent (C. elegans) | C. elegans: Strain N2 | Caenorhabditis Genetics Center | WormBase: N2 | |
Genetic reagent (C. elegans) | AW827 | Dr Alison Woollard laboratory | | him-5(e1490), heIs63 [wrt-2p::GFP::PH + wrt-2p::GFP::H2B + lin-48p::mCherry] V |
Genetic reagent (C. elegans) | CHL56 | This study | | drpIs3 [lin-48p::tdTomato] I; him-5(e1490) V |
Genetic reagent (C. elegans) | BAR37 | This study | | nsIs198 [mir-228p::GFP + lin-15(+)]; otIs356 [rab-3p::2xNLS::TagRFP], him-5(e1490) V |
Genetic reagent (C. elegans) | CHL32 | This study | | dpy-5(e907) I; otIs356 [rab-3p::2xNLS::TagRFP], him-5 (e1490) V; drpIs1 [grl-2p::GFP, dpy-5(+)] X |
Genetic reagent (C. elegans) | OH13083 | Pereira et al. Elife. 2015; Caenorhabditis Genetics Center | | him-5(e1490) V; otIs576 [unc-17fos::GFP + lin-44::YFP] |
Genetic reagent (C. elegans) | CHL36 | This study | | drpIs3 [lin-48p::tdTomato] I; inIs179 [ida-1p::GFP] II; him-8(e1489) IV |
genetic reagent (C. elegans) | CHL57 | This study | | drpIs3 [lin-48::tdTomato] I; mnIs17 [osm-6p::GFP + unc-36(+)]; him-5(e1490) V |
Genetic reagent (C. elegans) | CHL58 | This study | | drpIs3 [lin-48::tdTomato] I; otIs291 [rab-3p::2xNLS::YFP + rol-6(su1006)], him-5(e1490) V |
Genetic reagent (C. elegans) | CHL59 | This study | | drpIs3 [lin-48p::tdTomato] I; dpy-17(e164) III; otIs291 [rab-3p::2xNLS::YFP + rol-6(su1006)], him-5(e1490) V |
Genetic reagent (C. elegans) | CHL60 | This study | | drpIs3 [lin-48p::tdTomato] I; ced-4(n1162), dpy-17(e164) III; otIs291 [rab-3p::2xNLS::YFP + rol-6(su1006)], him-5(e1490) V |
Genetic reagent (C. elegans) | CHL61 | This study | | drpIs3 [lin-48p::tdTomato] I; him-5(e1490) V; drpIs1 [grl-2p::GFP, dpy-5(+)] X |
Genetic reagent (C. elegans) | CHL63 | This study | | drpIs3 [lin-48p::tdTomato] I; him-5(e1490) V; vsIs48 [unc-17p::GFP] X |
Genetic reagent (C. elegans) | CHL64 | This study | | drpIs3 [lin-48p::tdTomato] I; inIs179[ida-1p::GFP] II; him-5(e1490) V |
Genetic reagent (C. elegans) | CHL67 | This study | | drpIs3 [lin-48p::tdTomato] I; drpIs4 [oig-8p::GFP + pha-1(+)]; him-5(e1490) V |
Genetic reagent (C. elegans) | CHL65 | This study | | drpIs4 [oig-8p::GFP + pha-1(+)]; him-5(e1490) V |
Genetic reagent (C. elegans) | BAR77 | This study | | oleEx24 [grl-2(1 kb)::fem-3::SL2::mCherry (8 ng)+ elt-2p::GFP (40 ng)]; inIs179 [ida-1p::GFP] II; him-8(e1489) IV |
Genetic reagent (C. elegans) | CHL62 | This study | | oleEx18 [grl-2(1 kb)::fem-3::SL2:: mCherry(20 ng) + elt-2p::GFP (40 ng)]; drpIs3 [lin-48p::tdTomato] I; otIs291 [rab-3p::2xNLS::YFP + rol-6(su1006)], him-5(e1490) V |
Genetic reagent (C. elegans) | CHL68 | This study | | sem-4(n19719), drpIs3 [lin-48p::tdTomato] I; otIs291 [rab-3p::2xNLS::YFP + rol-6(su1006)], him-5(e1490) V |
Genetic reagent (C. elegans) | CHL69 | This study | | drpIs3 [lin-48p::tdTomato] I; egl-27(ok1670) II; otIs291 [rab-3p::2xNLS::YFP + rol-6(su1006)], him-5(e1490) V |
Genetic reagent (C. elegans) | CHL70 | This study | | drpIs3 [lin-48p::tdTomato] I; otIs291 [rab-3p::2xNLS::YFP + rol-6(su1006)], him-5(e1490) V; nre-1(hd20), lin-15B(hd126) X |
Genetic reagent (C. elegans) | CHL71 | This study | | drpIs3 [lin-48p::tdTomato] I; inIs179 [ida-1p::GFP] II; him-8(e1489) IV Generated during sox-2 mutant crosses. Distinct background to CHL36. |
Genetic reagent (C. elegans) | CHL72 | This study | | drpIs3 [lin-48p::tdTomato] I; inIs179 [ida-1p::GFP] II; him-8(e1489) IV; otEx4454 [sox-2(fosmid)::mCherry + elt-2p::DsRed] |
Genetic reagent (C. elegans) | CHL73 | This study | | drpIs3 [lin-48p::tdTomato] I; inIs179 [ida-1p::GFP] II; him-8(e1489) IV; sox-2(ot640[unc-119(+)]) X; otEx4454 [sox-2(fosmid)::mCherry + elt-2p::DsRed] |
Genetic reagent (C. elegans) | CHL74 | This study | | drpIs3 [lin-48p::tdTomato] I; inIs179 [ida-1p::GFP] II; him-8(e1489) IV; nre-1(hd20), lin-15B(hd126) X |
Genetic reagent (C. elegans) | EM1370 | Dr Scott Emmons laboratory | | bxEx271 [oig-8p::GFP + oig-8p::mCherry::rab-3]; him-5(e1490) V |
Genetic reagent (C. elegans) | EM1371 | Dr Scott Emmons laboratory | | bxEx272 [oig-8p::GFP + oig-8p::mCherry::rab-3]; him-5(e1490) V |
Genetic reagent (C. elegans) | BAR90 | This study | | him-5(e1490) V; oleEx27 [oig-8p::GCaMP6f::SL2::mRFP(30 ng/µl) + cc::GFP(30 ng/µl)] |
Genetic reagent (C. elegans) | BAR115 | This study | | unc-51(e369), him-5(e1490) V; oleEx27 [oig-8p::GCaMP6f:: SL2::mRFP(30 ng/µl) + cc::GFP(30 ng/µl)] |
Genetic reagent (C. elegans) | BAR115 | This study | | unc-51(e369), him-5(e1490) V; oleEx27 [oig-8p::GCaMP6f:: SL2::mRFP(30 ng/µl) + cc::GFP(30 ng/µl)]; oleEx38 [myo-3::HisCL1::SL2::Cherry(20 ng/µl)] |
Genetic reagent (C. elegans) | BAR95 | This study | | unc-13 (e51) I; him-5 (e1490) V; oleEx27 [oig-8p::GCaMP6f:: SL2::mRFP(30 ng/µl) + cc::GFP(30 ng/µl)] |
Genetic reagent (C. elegans) | BAR106 | This study | | unc-31(e169) IV; him-5(e1490) V; oleEx27 [oig-8p::GCaMP6f:: SL2::mRFP(30 ng/µl) + cc::GFP(30 ng/µl)] |
Genetic reagent (C. elegans) | EM1251 | Dr Scott W. Emmons laboratory | | bxEx201[oig-8p::GFP + pha-1(+)]; him-5(e1490) V - line#1 |
Genetic reagent (C. elegans) | EM1253 | Dr Scott W. Emmons laboratory | | bxEx201[oig-8p::GFP + pha-1(+)]; him-5(e1490) V - line#3 |
Genetic reagent (C. elegans) | BAR94 | This study | | him-5(e1490) V; lite-1(ce314) X; oleEx30[oig-8p::GCaMP6f::SL2::mRFP(50 ng/µl)] |
Genetic reagent (C. elegans) | CB369 | Caenorhabditis Genetics Center | | unc-51(e369) V |
Genetic reagent (C. elegans) | BAR160 | This study | | him-5(e1490) V; oleEx53 [pAB6(oig-8p::HisCl1::SL2::RFP) (30 ng/uL)+unc-122p::GFP(25 ng/uL)] |
Strain, strain background (E. coli) | Strain OP50 | Caenorhabditis Genetics Center | OP50 | |
Strain, strain background (E. coli) | Strain MG1693 (Thy-) | E. coli stock centre | MG1693 | Strain for EdU staining experiments |
Strain, strain background (E. coli) | Strain: HT115 (DE3) | Caenorhabditis Genetics Center | HT115 | |
Tecombinant DNA reagent | Plasmid: pPD95.75 | Addgene | #1494 | See: DNA constructs and transgenic strains Used to create oig-8prom::GFP and for PCR fusions |
Recombinant DNA reagent | Plasmid: oig-8prom::gfp | This study | | See: DNA constructs and transgenic strains 964 bp upstream of the oig-8 ATG |
Recombinant DNA reagent | Plasmid: pkd- 2prom::mCherry::rab-3 | Dr María I. Lázaro-Peña | | See: DNA constructs and transgenic strains Replaced promoter by oig-8prom |
Recombinant DNA reagent | Plasmid: oig- 8prom::mCherry::rab-3 | This study | | See: DNA constructs and transgenic strains Created from pkd-2prom::mCherry::rab-3 |
Recombinant DNA reagent | Plasmid pLR306 | Dr Luis Rene García Laboratory | | See: DNA constructs and transgenic strains Gateway plasmid used to amplify GCaMP6f::sl2::rfp |
Recombinant DNA reagent | Plasmid: oig- 8prom::GCaMP6f::SL2::RFP | This study | | See: DNA constructs and transgenic strains Created by PCR fusion (see primers) |
Recombinant DNA reagent | Plasmid: pNP471 | Dr Cori Bargmann Laboratory | | See: DNA constructs and transgenic strains Used to amplify HisCl1::sl2::mCherry |
Recombinant DNA reagent | Plasmid: oig- 8prom::HisCl1::sl2::rfp | This study | | See: DNA constructs and transgenic strains Created by Gibson |
Recombinant DNA reagent | Plasmid: myo- 3prom::HisCl1::sl2::mCherry | This study | | See: DNA constructs and transgenic strains Created by PCR fusion (see primers) |
Recombinant DNA reagent | Plasmid: lin- 48prom::tdTomato | Dr Mike Boxem Laboratory | | See: DNA constructs and transgenic strains 6.8 kb upstream of lin-48 ATG |
Recombinant DNA reagent | Plasmid pPD129.36 (L4440) | Dr Andrew Fire Laboratory, Addgene | #1654 | Control plasmid for RNAi experiments |
Recombinant DNA reagent | Plasmid: sox-2 RNAi clone | Source BioScience | | Silence endogenous sox-2 gene |
Sequence-based reagent | primer_oig-8 fusion_F | This study | PCR fusion primers | See: DNA constructs and transgenic strains gggagtgacctatgcaaacc |
Sequence-based reagent | primer_oig-8 fusion_R | This study | PCR fusion primers | See: DNA constructs and transgenic strains CGACGTGATGAGTCGACCAT tgttttacctgaaatctttt |
Sequence-based reagent | primer_myo-3 fusion_F | This study | PCR fusion primers | See: DNA constructs and transgenic strains cgtgccatagttttacattcc |
Sequence-based reagent | primer_myo-3 fusion_R | This study | PCR fusion primers | See: DNA constructs and transgenic strains gctagttgggctttgcatGCttctagatggatctagtggtc |
Sequence-based reagent | primer_ced-4 (n1162)_F | This study | PCR genotyping primers | See: C. elegans strains gatgctctgcgaaatcgaatgc |
Sequence-based reagent | primer_ced-4 (n1162)_R | This study | PCR genotyping primers | See: C. elegans strains tcacctaaatcacacatctcgtcg |
Sequence-based reagent | primer_dpy-17 (e164)_F | This study | PCR genotyping primers | See: C. elegans strains aggaggaagcccaatcaacc |
Sequence-based reagent | primer_dpy-17 (e164)_R | This study | PCR genotyping primers | See: C. elegans strains cagttggtccttcttctccagc |
Sequence-based reagent | primer_sem-4 (n1971)_F | This study | PCR genotyping primers | See: C. elegans strains aaggtgatgcgatgatgtctcc |
Sequence-based reagent | primer_sem-4 (n1971)_R | This study | PCR genotyping primers | See: C. elegans strains taatgatcggcttgggtgtgg |
Sequence-based reagent | primer_egl-27 (ok1679)_F ext | This study | PCR genotyping primers | See: C. elegans strains tcatcgtttccagtctcttcagg |
Sequence-based reagent | primer_egl-27 (ok1679)_R ext | This study | PCR genotyping primers | See: C. elegans strains cgctggttatcaaatgacgcc |
Sequence-based reagent | primer_egl-27 (ok1679)_F int | This study | PCR genotyping primers | See: C. elegans strains agacaccagaagctacgaaacc |
Sequence-based reagent | primer_egl-27 (ok1679)_R int | This study | PCR genotyping primers | See: C. elegans strains gtttgcatcacggtcttcacg |
Sequence-based reagent | primer_nre-1(hd20) lin-15B(hd126)_F | This study | PCR genotyping primers | See: C. elegans strains catgagagctgcgctgaggc |
Sequence-based reagent | primer_nre-1(hd20) lin-15B(hd126)_R | This study | PCR genotyping primers | See: C. elegans strains ggttcgggctcgcggtagtc |
Chemical compound, drug | Paraformaldehyde | Thermo Fisher Scientific | #28908 | Used at 4% |
Chemical compound, drug | β-mercapto-ethanol | Sigma Aldrich | M6250 | Used at 5% |
Chemical compound, drug | Collagenase type IV | Sigma Aldrich | C-5138 | Used at 1 mg/ml |
Chemical compound, drug | Vectashield antifade | Vector Laboratories | H-1900 | |
Chemical compound, drug | Isopropyl-β-D- thiogalactopyranoside (IPTG) | Generon | GEN-S-02122 | Used at 0.6 mM in plates for RNAi knock-down |
Chemical compound, drug | Histamine | Sigma | H7125 | Used at 20 mM in plates for behavioural assays |
Chemical compound, drug | Wormglu | GluStitch, Delta, Canada | | |
Antibody | Anti-RFP pAb (Rabbit polyclonal antibody) | MBL International | PM005 | (1:500) |
Antibody | Donkey anti-Rabbit IgG (H+L) Highly Cross-Adsorbed Secondary Antibody, Alexa Fluor 555 (Donkey polyclonal antibody) | Molecular probes | A-31572 | (1:200) |
Commercial assay or kit | Click-IT EdU Alexa Fluor 594 | Invitrogen | C10339 | |
Software, algorithm | ImageJ | ImageJ (http://imagej.nih.gov/ij/) | RRID:SCR_003070 | |
Software, algorithm | GraphPad Prism | GraphPad Prism (graphpad.com) | RRID:SCR_002798 | |
Software, algorithm | Affinity Designer | https://affinity.serif.com/ en-us/designer/ | RRID:SCR_016952 | |