All the code and data used to generate the figures are freely available at https://github.com/XSLiuLab/tumor-immunogenicity-score (copy archived at https://github.com/elifesciences-publications/tumor-immunogenicity-score). Analyses can be read online at https://xsliulab.github.io/tumor-immunogenicity-score/. Source data files have been provided for Figures 1, 2, 4 and 5.
NCBI Gene Expression OmnibusID GSE39612. Distinct gene expression profiles of viral- and non-viral associated Merkel cell carcinoma revealed by transcriptome analysis.
NCBI Gene Expression OmnibusID GSE22396. Gene expression analysis of Merkel Cell Carcinoma.
NCBI Gene Expression OmnibusID GSE36150. Gene expression changes associated with prognosis of Merkel cell carcinoma.
NCBI Gene Expression OmnibusID GSE50451. Microarray analysis of Merkel cell carcinoma (MCC) tumors, small cell lung cancer (SCLC) tumors, and MCC cell lines.
NCBI Gene Expression OmnibusID GSE99316. Gene repression and ChIP-seq in Human Small Cell Lung Cancer.