A large-scale resource for tissue-specific CRISPR mutagenesis in Drosophila
- German Cancer Research Center (DKFZ) and Heidelberg University, Germany
Abstract
Genetic screens are powerful tools for the functional annotation of genomes. In the context of multicellular organisms, interrogation of gene function is greatly facilitated by methods that allow spatial and temporal control of gene abrogation. Here, we describe a large-scale transgenic short guide (sg) RNA library for efficient CRISPR-based disruption of specific target genes in a constitutive or conditional manner. The library consists currently of more than 2600 plasmids and 1700 fly lines with a focus on targeting kinases, phosphatases and transcription factors, each expressing two sgRNAs under control of the Gal4/UAS system. We show that conditional CRISPR mutagenesis is robust across many target genes and can be efficiently employed in various somatic tissues, as well as the germline. In order to prevent artefacts commonly associated with excessive amounts of Cas9 protein, we have developed a series of novel UAS-Cas9 transgenes, which allow fine tuning of Cas9 expression to achieve high gene editing activity without detectable toxicity. Functional assays, as well as direct sequencing of genomic sgRNA target sites, indicates that the vast majority of transgenic sgRNA lines mediate efficient gene disruption. Furthermore, we conducted the so far largest fully transgenic CRISPR screen in any metazoan organism, which further supported the high efficiency and accuracy of our library and revealed many so far uncharacterized genes essential for development.
Data availability
All data generated or analysed during this study are included in the manuscript and supporting files.
Article and author information
Author details
Funding
Deutsche Forschungsgemeinschaft (TRR186)
- Fillip Port
- Bojana Pavlovic
- Michael Boutros
European Research Council (Decode)
- Michael Boutros
The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.
Reviewing Editor
- Michael B Eisen, HHMI, University of California, Berkeley, United States
Version history
- Received: November 22, 2019
- Accepted: February 1, 2020
- Accepted Manuscript published: February 13, 2020 (version 1)
- Version of Record published: March 9, 2020 (version 2)
Copyright
© 2020, Port et al.
This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.
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A large-scale resource for tissue-specific CRISPR mutagenesis in Drosophila
eLife 9:e53865.
https://doi.org/10.7554/eLife.53865
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