The colorectal tissue biopsies were exposed to HIV-1BaL (250 ng/mL), either free (F-HIV), complement-opsonized (C-HIV), or virions opsonized by a cocktail of complement and antibodies (CI-HIV) or …
Representative histological images from three different donors of hematoxylin-eosin staining of sections from colonic mucosa used in the study. Original magnification 50x.
(A) The generation of iC3b was assessed in serum incubated without HIV-1 (MOCK) or in serum incubated with HIV-1 for 1 hr at 37°C. HIV-1 alone without serum was used as a control. The levels of iC3b …
Mucosal immune cells isolated from the colorectal tissue biopsies by enzymatic digestion were exposed to HIV-1BaL, either free (F-HIV), complement opsonized (C-HIV), or virions opsonized by a …
The colorectal tissue biopsies were exposed to HIV-1BaL (250 ng/mL), either free (F-HIV), complement-opsonized (C-HIV), or virions opsonized by a cocktail of complement and antibodies (CI-HIV) or …
Mucosal immune cells isolated from the colorectal tissue biopsies by enzymatic digestion were exposed to HIV-1BaL, either free (F-HIV), complement-opsonized (C-HIV), or virions opsonized by a …
Mucosal immune cells isolated from the colorectal tissue biopsies by enzymatic digestion were exposed to HIV-1BaL (250 ng/mL), either free (F-HIV), complement-opsonized (C-HIV), or virions opsonized …
(A-B) Strategy for gating of T cell subsets and T cell viability. Mucosal immune cells isolated from the colorectal tissue biopsies by enzymatic digestion were exposed to HIV-1BaL, either free …
Mucosal immune cells isolated from the colorectal tissue biopsies by enzymatic digestion were exposed to HIV-1BaL (250 ng/mL), either free (F-HIV), complement-opsonized (C-HIV), or virions opsonized …
Mucosal immune cells isolated from the colorectal tissue biopsies by enzymatic digestion were exposed to HIV-1BaL, either free (F-HIV), complement-opsonized (C-HIV), or virions opsonized by a …
Mucosal immune cells isolated from the colorectal tissue biopsies by enzymatic digestion were exposed to HIV-1BaL (250 ng/mL), either free (F-HIV), complement-opsonized (C-HIV), or virions opsonized …
Mucosal immune cells isolated from the colorectal tissue biopsies by enzymatic digestion were exposed to HIV-1BaL for 96 hr, either free (F-HIV), complement-opsonized (C-HIV), or virions opsonized …
Mucosal immune cells isolated from the colorectal tissue biopsies by enzymatic digestion were exposed to HIV-1BaL (250 ng/mL), either free (F-HIV), complement-opsonized (C-HIV), or virions opsonized …
Mucosal immune cells isolated from the colorectal tissue biopsies by enzymatic digestion were exposed to HIV-1BaL (250 ng/mL), either free (F-HIV), complement-opsonized (C-HIV), or virions opsonized …
Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
---|---|---|---|---|
Biological sample (human) | Colorectal Tissue Biopsies | Surgical Department of Linköping University Hospital | The tissue pieces were either cut into small explants or punched into biopsies | |
Antibody | anti-human CD3-PerCP/AmCyan(Mouse monoclonal) | BD Biosciences | Cat#: 552851/339186 | FACS (1 ul per test) |
anti-human CD4-PE/BV421(Mouse monoclonal) | BD Biosciences | Cat#: 555347/562424 | FACS (1 ul per test) | |
anti-human CD8-PerCPCy5.5(Mouse monoclonal) | BD Biosciences | Cat#: 560662 | FACS (1 ul per test) | |
anti-human CD1a-APC(Mouse monoclonal) | BD Biosciences | Cat#: 559775 | FACS (1 ul per test) | |
anti-human CD163-APCCy7(Mouse monoclonal) | BioLegend | Cat#: 50-850-648 | FACS (1 ul per test) | |
anti-human CD45RA-FITC(Mouse monoclonal) | BD Biosciences | Cat#: 555488 | FACS (1 ul per test) | |
anti-human CD45RO-FITC(Mouse monoclonal) | BD Biosciences | Cat#: 555492 | FACS (1 ul per test) | |
anti-human CD38-PerCP-Cy5.5(Mouse monoclonal) | BD Biosciences | Cat#: 551400 | FACS (1 ul per test) | |
anti-human CD160-PE(Mouse monoclonal) | BD Biosciences | Cat#: 562118 | FACS (1 ul per test) | |
anti-human PD-1-BV421(Mouse monoclonal) | BioLegend | Cat#: 329920 | FACS (1 ul per test) | |
anti-human TIM3-PE(Mouse monoclonal) | BioLegend | Cat#: 345006 | FACS (1 ul per test) | |
anti-human LAG3-FITC(Mouse monoclonal) | BioLegend | Cat#: 369308 | FACS (1 ul per test) | |
anti-human CXCR3-PE(Mouse monoclonal) | BioLegend | Cat#: 353706 | FACS (1 ul per test) | |
anti-human CCR4-AF647(Mouse monoclonal) | BioLegend | Cat#: 359404 | FACS (1 ul per test) | |
anti-human CCR6-PECy7(Mouse monoclonal) | BD Biosciences | Cat#: 560620 | FACS (1 ul per test) | |
anti-human CCR7-PerCPCy5.5(Mouse monoclonal) | BioLegend | Cat#: 353220 | FACS (1 ul per test) | |
anti-Tbet-FITC/PECy7(Mouse monoclonal) | BioLegend | Cat#: 644812/644824 | FACS (1 ul per test) | |
anti-human EOMES-eFluor660(Mouse monoclonal) | eBioscience | Cat#: 50-4877-41 | FACS (1 ul per test) | |
anti-human RORγt-PE(Mouse monoclonal) | BD Biosciences | Cat#: 563081 | FACS (1 ul per test) | |
anti-GATA3-PECy7(Mouse monoclonal) | BD Biosciences | Cat#: 560405 | FACS (1 ul per test) | |
anti-human FoxP3-AF647(Mouse monoclonal) | BD Biosciences | Cat#: 560045 | FACS (1 ul per test) | |
anti-human Perforin-Pacific Blue(Mouse monoclonal) | BioLegend | Cat#: 308118 | FACS (1 ul per test) | |
anti-human Granzyme B-AF647(Mouse monoclonal) | BD Biosciences | Cat#: 560212 | FACS (1 ul per test) | |
Anti-human HIV-1 Core Antigen-FITC, KC57 (Mouse monoclonal) | Beckman Coulter | Cat#: 6604665 | FACS (1 ul per test) | |
Anti-human IgG1 Mouse-FITC Isotype Control | Beckman Coulter | Cat#: IM0639U | FACS (1 ul per test) | |
Zombie NIR Fixable Viability Kit | BioLegend | Cat#: 423106 | FACS (diluted as manufacturer’s protocol) | |
Sequence-based reagent | β-Actin_F | Eurofins Genomics/CyberGene AB | PCR primers | |
β-Actin_R | Eurofins Genomics/CyberGene AB | PCR primers | ||
GADPH_F | Eurofins Genomics/CyberGene AB | PCR primers | ||
GADPH_R | Eurofins Genomics/CyberGene AB | PCR primers | ||
Commercial assay or kit | Human Inflammatory Cytokine CBA Kit | BD Biosciences | 551811 | |
Human IFNγ CBA Flex Set | BD Biosciences | 558269 | ||
Human IP-10 CBA Flex Set | BD Biosciences | 558280 | ||
Human MIP-1α CBA Flex Set | BD Biosciences | 558325 | ||
Human IL-17A Enhanced Sensitivity CBA Flex Set | BD Biosciences | 562143 | ||
Software, algorithm | CFX Manager 3.1 | Bio-Rad | ||
Ingenuity Pathway Analysis (IPA) | Qiagen | |||
FlowJo | Treestar | |||
FCAP Array | BD Biosciences | |||
GraphPad Prism 5 | GraphPad Software |