Root tips of 6-day-old Arabidopsis seedlings were analyzed by confocal laser scanning microscopy (CLSM) (A) The chimeric constructs a1NT179a3-GFP and a1NT228a3-GFP show dual localization at the …
Amino acid sequence alignment of the yeast subunit a isoforms Vph1p and Stv1p with the Arabidopsis isoforms VHA-a1 and VHA-a3. Residues similar between all proteins at the same position are shown …
(A) Chimeric proteins were made which consisted of increasing lengths of the VHA‐a1 N‐terminus fused to decreasing lengths of the C‐terminal domain of VHA‐a3. All constructs were fused to GFP. (B) …
Homology modeling of the N- termini of VHA-a1 and VHA-a3 was done using cryo-EM models of Stv1p (PDB607U) and Vph1p (PDB607T) respectively as templates. The models are color ramped.
(A) The VHA-a1-clade consensus sequence for the a1-TD region was made on the weblogo platform (Crooks et al., 2004). Sequence numbers are based on Arabidopsis VHA-a1. Conserved amino acids were …
Source data for Figure 2K.
Amino acid sequence alignment of representative sequences from the VHA-a1 and VHA-a3 clades. The sequence numbers are in reference to the A. thaliana VHA-a1 sequence. Residues highlighted in black, …
After 6 hr of induction with 60 µM DEX, AtSar1b-GTP-CFP is expressed in 6-day-old Arabidopsis root tip cells. (A) VHA-a1-GFP is retained in the ER and also agglomerates to produce bright punctae …
(A) EM of high-pressure frozen Arabidopsis root tips. After 6 hr of induction with 60 µM DEX, AtSar1b-GTP-CFP expression causes bloating of the ER, aggregation of Golgi stacks and leads to an …
The localization and fluorescence intensity of mutated VHA-a1-GFP proteins was analyzed in the presence (+DEX) and absence (DMSO) of AtSar1b-GTP-CFP. Root tips of 6-day-old Arabidopsis seedlings …
Source data for Figure 4B.
(A) The localization of mutated VHA-a1 proteins tagged to GFP were analyzed in the vha-a2 vha-a3 double mutant background after 20 min staining with FM4-64. Root tips of 6-day-old Arabidopsis …
Source data for Figure 5B.
VHA-a3-R729N-GFP is retained in the wild type background and localizes to the tonoplast in the vha-a2 vha-a3 double mutant background. Scale bars = 10 µm.
(A) Phylogenetic analysis of the N-terminal sequences of VHA-a proteins was done. A graphical summary of the tree is depicted. VHA-a isoforms from seed plants including the gymnosperm Pinus taeda …
VHA-a related protein sequences for selected species are shown. Branch support is calculated on the basis of 500 bootstraps.
Plants were grown in short day conditions (22 °C and 10 hr light) for 6 weeks. (A) All mutant variants of VHA-a1-GFP displayed bigger rosette size than the vha-a2 vha-a3 double mutant. E161S which …
Source data for Figure 7B and C.
Plants were grown in long day conditions (22 °C and 16 hr of light) for 4 weeks. All mutant variants of VHA-a1-GFP displayed bigger rosette size than the vha-a2 vha-a3 double mutant. VHA-a1 with the …
Source data for Figure 7—figure supplement 1B.
Abundance of the GFP tagged proteins was determined via western blot. Tonoplast membrane proteins were separated by SDS-PAGE and subsequently immunoblotted with an anti-VHA-a1, VHA-a3 and VHA-B …
Source data for Figure 7—figure supplement 2.
(A) MpVHA-a-mVenus is dual localized at the tonoplast and TGN/EE in the vha-a2 vha-a3 background. The TGN/EE localization was confirmed by treatment of root cells with 50 µm BFA for 3 hr followed by …
Source data for Figure 8C.
Source data for Figure 8D.
(A and B) Single confocal images of M. polymorpha dorsal thallus cells co-expressing mRFP-MpSYP6A and MpVHA-a-mVenus driven by the CaMV35S (A) or MpEF1α (B) promoter. Green, magenta, and blue pseudo …
UBQ10:MpVHA-a-mVenus was co-expressed with UBQ10:VHA-a3-pmScarlet-I and VHA-a1:VHA-a1-mRFP in Arabidopsis wildtype. Confocal analysis was done on 6-day-old Arabidopsis roots. (A) MpVHA-a-mvenus …
(A) The exon-intron structure of the first seven exons of VHA-a1 shows the sites which were targeted in independent CRISPR approaches. vha-a1-1, vha-a1-2, vha-a1-3 and vha-a1-4 are examples for vha–a…
(A) Mutations in VHA-a1 were distinguished from mutations in VHA-a1-GFP by use of specific primers. Shown are the exon-intron structures of gene and transgene. Primer one is VHA-a1 specific, while …
(A) vha-a1 (Cas9+) was crossed with UBQ10:MpVHA-a-mVenus in wildtype background and F1 seedlings were analyzed by CLSM. Root tips of 6-day-old seedlings were analyzed. MpVHA-a-mVenus was dual …
(A) vha-a1 vha-a1-GFP hypocotyls are hypersensitive to 125 nM ConcA, in contrast to wildtype hypocotyls indicating that a target of ConcA is present at the TGN/EE. vha-a1 hypocotyls expressing UBQ10:…
Source data for Figure 10A.
Root morphology of 4-day-old etiolated seedlings. vha-a1 roots are hypersensitive to 125 nM ConcA, in contrast to wild type roots and roots of plants expressing vha-a1 VHA-a1-GFP. Scale bars = 75 µm.
Source data for Figure 10—figure supplement 1A.
(A) vha-a1 (Cas9+) was crossed with the vha-a2 vha-a3 double mutant. Analysis of F1 plants revealed that vha-a1 vha-a2/+ vha-a3/+ is reduced in growth. Rosette areas of 3.5-week-old plants were …
Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
---|---|---|---|---|
Strain, strain background Arabidopsis thaliana | Col-0 | Nottingham Arabidopsis Stock center (NASC) | NASC: N37008 | |
Strain, strain background (Marchantia polymorpha) | Tak-1 | Ishizaki et al., 2008 PMID:18535011 | ||
Genetic reagent Arabidopsis thaliana | vha-a2 vha-a3 | (Krebs et al., 2010) PMID:20133698 | At2g21410,At4g39080 | SALK_142642 SALK_29786 |
Genetic reagent Arabidopsis thaliana | vha-a1-1 | this study | At2g28520 | See Materials and methods, Construct design and plant transformation |
Genetic reagent Arabidopsis thaliana | vha-a1-2 | this study | At2g28520 | See Materials and methods, Construct design and plant transformation |
Genetic reagent Arabidopsis thaliana | vha-a1-3 | this study | At2g28520 | See Materials and methods, Construct design and plant transformation |
Genetic reagent Arabidopsis thaliana | vha-a1-4 | this study | At2g28520 | See Materials and methods, Construct design and plant transformation |
Genetic reagent Arabidopsis thaliana | BRI1: BRI-GFP | (Geldner et al., 2007) PMID:17578906 | ||
Genetic reagent (Marchantia polymorpha) | CaMV35S:mRFPMpSyp6A | (Kanazawa et al., 2016) PMID:26019268 | ||
Gene Arabidopsis thaliana | VHA-a1 | arabidopsis.org | At2g28520 | |
Gene Arabidopsis thaliana | VHA-a3 | arabidopsis.org | At4g39080 | |
Gene Arabidopsis thaliana | Sar1B | arabidopsis.org | At1g56330 | |
Gene (Rattus norvegicus) | Beta-galactoside alpha-2,6-sialyltransferase 1 (ST) | RGD | 3676 | |
Gene Arabidopsis thaliana | Brassinosteroid insensitive 1 (BRI1) | arabidopsis.org | At4g39400 | |
Gene (Marchantia polymorpha) | MpVHA-a | Marchantia genome database | Mp3g15140 | |
Gene Arabidopsis thaliana | MpSYP6A | Marchantia genome database | Mp3g18380 | |
Gene (Amborella trichopoda) | Amborella trichopoda VHA-a | Phytozome | evm_27.TU.AmTr _v1.0_scaffold00080.37 | |
Gene (Selaginella moellendorffii) | Selaginella moellendorffii VHA-a | Phytozome | 182335 | |
Gene (Pinus taeda) | Pinus taeda VHA-a | PineRefSeq, Tree genes | 5A_I15_VO_L_1_ T_29156/41278 | |
Transfected construct Arabidopsis thaliana | CRISPR VHA-a1 U6-26p: gRNA one and U6-29p:gRNA two in pHEE401E | this study | Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | CRISPR VHA-a1 U6-26p: gRNA three in pHEE401E | this study | Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | CRISPR VHA-a1 U6-26p: gRNA four in pHEE401E | this study | Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | UBQ10: VHA-a1 NT 35 aa-VHA-a3 | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | UBQ10: VHA-a1 NT 85 aa-VHA-a3 | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | UBQ10: VHA-a1 NT 131 aa-VHA-a3 | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | UBQ10: VHA-a1 NT 179 aa-VHA-a3 | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | UBQ10: VHA-a1 NT 228 aa-VHA-a3 | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | UBQ10:VHA-a1-intron10-GFP | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | UBQ:VHA-a3-pmScarlet-I | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | UBQ10:VHA-a1-intron10 E156Q-GFP | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | UBQ10:VHA-a1-intron10 E161S-GFP | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | UBQ10:VHA-a1-intron10 F134Y-GFP | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | UBQ10:VHA-a1-intron10 L159T-GFP | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | UBQ10:VHA-a1-intron10 E156Q + L159T-GFP | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | UBQ10:VHA-a1-intron10 L159T + E161S -GFP | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | UBQ10:VHA-a1- intron10 ELE-GFP | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | UBQ10:VHA-a1-intron10 ΔEEI-GFP | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | UBQ:VHA-a3R729N-GFP | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | UBQ10:VHA-a3-a1-TD-GFP | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | Dex:Sar1BH74L-CFP | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | UBQ10:MpVHA-a-mVenus | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct (Marchantia polymorpha) | CaMV35S:MpVHA-a-mVenus | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct (Marchantia polymorpha) | MpEF1α:MpVHA-a-mVenus | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | UBQ: A.trichopoda -VHA-a-NT-VHA-a1-mCherry | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | UBQ:P.taeda-VHA- a-NT-VHA-a1-mVenus | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | UBQ:S.moellendorffii -VHA-a-NT-VHA-a1-mCherry | this study | See Materials and methods, Construct design and plant transformation | |
Transfected construct Arabidopsis thaliana | UBQ:ST-GFP | this study | See Materials and methods, Construct design and plant transformation | |
Recombinant DNA reagent (plasmid) | UBQ10 promoter | Lampropoulos et al., 2013 PMID:24376629 | pGGA006 | |
Recombinant DNA reagent (plasmid) | pOp6 | Schürholz et al., 2018 PMID:30026289 | pGGA016 | |
Recombinant DNA reagent (plasmid) | B-Dummy | Lampropoulos et al., 2013 PMID:24376629 | pGGB003 | |
Recombinant DNA reagent (plasmid) | entry module C | Lampropoulos et al., 2013 PMID:24376629 | pGGC000 | |
Recombinant DNA reagent (plasmid) | pGGC-VHA-a3 | this study | pKSC003 | See Materials and methods, Construct design and plant transformation |
Recombinant DNA reagent (plasmid) | pGGC-VHA-a1-intron 10 | this study | pKSC012 | See Materials and methods, Construct design and plant transformation |
Recombinant DNA reagent (plasmid) | pGGC-ST | this study | pKSC013 | See Materials and methods, Construct design and plant transformation |
Recombinant DNA reagent (plasmid) | GR-LhG4 | Schürholz et al., 2018 PMID:30026289 | pGGC018 | |
Recombinant DNA reagent (plasmid) | linker GFP | Lampropoulos et al., 2013 PMID:24376629 | pGGD001 | |
Recombinant DNA reagent (plasmid) | linker-CFP | Lampropoulos et al., 2013 PMID:24376629 | pGGD004 | |
Recombinant DNA reagent (plasmid) | GFP (A206K) no linker | Lampropoulos et al., 2013 PMID:24376629 | pGGD011 | |
Recombinant DNA reagent (plasmid) | GSL-mVenus | this study | p2456 | See Materials and methods, Construct design and plant transformation |
Recombinant DNA reagent(plasmid) | GSL-pmScarlet-I | this study | p1324 | See Materials and methods, Construct design and plant transformation |
Recombinant DNA reagent (plasmid) | GSL-mCherry | Waadt et al., 2017 PMID:28850185 | p2897 | |
Recombinant DNA reagent (plasmid) | rbcS terminator | Lampropoulos et al., 2013 PMID:24376629 | pGGE001 | |
Recombinant DNA reagent (plasmid) | HSP18.2M terminator | Waadt et al., 2017 PMID:28850185 | p1296 | |
Recombinant DNA reagent (plasmid) | BastaR | Lampropoulos et al., 2013 PMID:24376629 | pGGF001 | |
Recombinant DNA reagent (plasmid) | SulfR | Lampropoulos et al., 2013 PMID:24376629 | pGGF012 | |
Recombinant DNA reagent (plasmid) | KanR | Lampropoulos et al., 2013 PMID:24376629 | pGGF007 | |
Recombinant DNA reagent (plasmid) | HygR_pNos | Waadt et al., 2017 PMID:28850185 | p1317 | |
Recombinant DNA reagent (plasmid) | HygR_pUbq10 | Lampropoulos et al., 2013 PMID:24376629 | pGGF005 | |
Recombinant DNA reagent (plasmid) | F-H adapter | Lampropoulos et al., 2013 PMID:24376629 | pGGG001 | |
Recombinant DNA reagent (plasmid) | H-A adapter | Lampropoulos et al., 2013 PMID:24376629 | pGGG002 | |
Recombinant DNA reagent (plasmid) | intermediate vector M | Lampropoulos et al., 2013 PMID:24376629 | pGGM000 | |
Recombinant DNA reagent (plasmid) | intermediate vector N | Lampropoulos et al., 2013 PMID:24376629 | pGGN000 | |
Recombinant DNA reagent (plasmid) | UBQ10:GR-LHG4:trbcS | this study | pKSM002 | See Materials and methods, Construct design and plant transformation |
Recombinant DNA reagent (plasmid) | pOP6:Sar1BH74L-CFP | this study | pKSN009 | See Materials and methods, Construct design and plant transformation |
Recombinant DNA reagent (plasmid) | pGGZ001 | Lampropoulos et al., 2013 PMID:24376629 | ||
Recombinant DNA reagent (plasmid) | pGGZ003 | Lampropoulos et al., 2013 PMID:24376629 | ||
Recombinant DNA reagent (plasmid) | pGGZ004 | this study | See Materials and methods, Construct design and plant transformation | |
Recombinant DNA reagent (plasmid) | pHEE401E | Wang et al., 2015 PMID:26193878 | See Materials and methods, Construct design and plant transformation | |
Antibody | VHA-a1 (rabbit polyclonal) | Agrisera | AS142822 | (1:1000) |
Antibody | VHA-a3 (rabbit polyclonal) | Agrisera | AS204369 | (1:1000) |
Antibody | VHA-B (mouse polyclonal) | Ward et al., 1992 PMID:16668845 | (1:100) | |
Antibody | anti-GFP (rabbit polyclonal) | Roth et al., 2018 PMID:30410018 | (1:5000) | |
Chemical compound, drug | Concanamycin-A (ConcA) | Santa Cruz | sc-202111A | |
Chemical compound, drug | Brefeldin A | LC Laboratories | B-8500 | |
Chemical compound, drug | FM4-64 | Thermo Fisher Scientific | T13320 | |
Chemical compound, drug | Dexamethasone (DEX) | Sigma-Aldrich | D4902 | |
Chemical compound, drug | Malachite Green, Acid Fuchsin, Orange G | Thermo Fisher Scientific | AC413490250, AC400210250, AC229820250 | Alexander stain |
Commercial assay or kit | CloneJET PCR Cloning kit | Thermo Fisher Scientific | K1231 | |
Strain, strain background (E. coli) | NEBα | In-house facility | COS Heidelberg | |
Strain, strain background (A. tumefaciens) | GV3101 | In-house facility | COS Heidelberg | |
Strain, strain background (A. tumefaciens) | ASE1 | In-house facility | COS Heidelberg | |
Software, algorithm | Adobe Illustrator 2020 | Adobe Inc | Figure assembly | |
Software, algorithm | Zen Software | Carl Zeiss | Microscopy | |
Software, algorithm | Leica LSF | Leica | Microscopy | |
Software, algorithm | Originpro 2020 | Origin | Statistics and graph plotting | |
Software, algorithm | Intas Imager | Intas | Western blot | |
Software, algorithm | Image J | NIH | Image quantification |
Supplementary tables.